SRR25827298
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR25827519
|
Pre-XDR-TB
|
lineage2.2.1;lineage3
|
None
|
ERR2513240
|
MDR-TB
|
lineage2.2.1
|
gb
|
ERR4799404
|
MDR-TB
|
lineage2.2.1
|
in
|
ERR4799917
|
MDR-TB
|
lineage2.2.1
|
in
|
ERR4830663
|
Pre-XDR-TB
|
lineage2.2.1
|
np
|
SRR25827509
|
MDR-TB
|
lineage2.2.1;lineage3;lineage4.3.2
|
None
|
ERR4797556
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4798786
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4800291
|
XDR-TB
|
lineage2.2.1
|
in
|
SRR25827627
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4796995
|
MDR-TB
|
lineage2.2.1
|
in
|
ERR4797789
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4798017
|
XDR-TB
|
lineage2.2.1
|
in
|
SRR25827401
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13266736
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4798725
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR13260024
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4796820
|
XDR-TB
|
lineage2.2.1
|
in
|
ERR4796256
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4799819
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4797711
|
Pre-XDR-TB
|
lineage1.2.2.2;lineage2.2.1
|
in
|
SRR25827570
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4799955
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4796968
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4800349
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR25827856
|
MDR-TB
|
lineage2.2.1;lineage3
|
None
|
ERR4798129
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4831023
|
Pre-XDR-TB
|
lineage2.2.1
|
np
|
ERR4800292
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR13261500
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4800392
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR22424820
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR22424839
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4799964
|
MDR-TB
|
lineage2.2.1
|
in
|
ERR4800527
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR28046161
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28045926
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR25827489
|
XDR-TB
|
lineage1.1.2;lineage2.2.1;lineage3.1.2.1
|
None
|
ERR4796877
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4799041
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4830978
|
Pre-XDR-TB
|
lineage2.2.1
|
np
|
SRR28045810
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4800551
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4800567
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4830940
|
Pre-XDR-TB
|
lineage2.2.1
|
np
|
SRR22424755
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4796659
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4797508
|
MDR-TB
|
lineage2.2.1
|
in
|
ERR4798281
|
XDR-TB
|
lineage2.2.1
|
in
|
ERR4830982
|
Pre-XDR-TB
|
lineage2.2.1
|
np
|
SRR28045767
|
HR-TB
|
lineage2.2.1
|
None
|
ERR4796948
|
MDR-TB
|
lineage2.2.1
|
in
|
ERR4797326
|
MDR-TB
|
lineage2.2.1
|
in
|
ERR4798242
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4796528
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR28351158
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13266717
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR7069701
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR25827622
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR4800064
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4797939
|
MDR-TB
|
lineage2.2.1
|
in
|
ERR4797702
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4796893
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4797419
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4800478
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4800563
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4799362
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR13261373
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4799490
|
MDR-TB
|
lineage2.2.1
|
in
|
SRR25827686
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR4799436
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4798626
|
MDR-TB
|
lineage2.2.1
|
in
|
ERR4797908
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR13261387
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28045253
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4799788
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13261243
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13261979
|
HR-TB
|
lineage2.2.1
|
None
|
ERR10225472
|
Pre-XDR-TB
|
lineage2.2.1.1
|
None
|
SRR25827463
|
Pre-XDR-TB
|
lineage2.2.1;lineage4.1.1.3
|
None
|
SRR25827475
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4800162
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13266680
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR25827528
|
MDR-TB
|
lineage2.2.1.1
|
None
|
SRR28045561
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4799492
|
MDR-TB
|
lineage2.2.1
|
in
|
SRR22175214
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR25827605
|
Pre-XDR-TB
|
lineage2.2.1;lineage3;lineage4
|
None
|
SRR25827468
|
Pre-XDR-TB
|
lineage2.2.1;lineage4.1.1.1
|
None
|
ERR4830916
|
Pre-XDR-TB
|
lineage2.2.1
|
np
|
SRR25827408
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28351572
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR25827412
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13262000
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4799937
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR25827504
|
MDR-TB
|
lineage2.2.1;lineage3
|
None
|
SRR22175222
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4796850
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4799591
|
MDR-TB
|
lineage2.2.1
|
in
|
ERR4800618
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28351342
|
HR-TB
|
lineage2.2.1;lineage4
|
None
|
SRR28351363
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR28351163
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR28351365
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR25827752
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4798421
|
MDR-TB
|
lineage2.2.1
|
in
|
ERR4798738
|
XDR-TB
|
lineage2.2.1
|
in
|
SRR25827530
|
XDR-TB
|
lineage2.2.1;lineage4
|
None
|
SRR25827641
|
XDR-TB
|
lineage2.2.1;lineage4
|
None
|
SRR25827294
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR25827452
|
MDR-TB
|
lineage1.1.2;lineage2.2.1;lineage4.2.2.2
|
None
|
ERR13266547
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR25827786
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR13266106
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4799873
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR13266797
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13267031
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4799529
|
XDR-TB
|
lineage2.2.1
|
in
|
ERR4796743
|
Pre-XDR-TB
|
lineage1.2.2.2;lineage2.2.1
|
in
|
ERR4796608
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4798286
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4797545
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR25827376
|
Pre-XDR-TB
|
lineage2.2.1;lineage3
|
None
|
ERR4797302
|
MDR-TB
|
lineage2.2.1
|
in
|
ERR4830981
|
Pre-XDR-TB
|
lineage2.2.1
|
np
|
ERR4798744
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR13261152
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4796424
|
XDR-TB
|
lineage2.2.1
|
in
|
ERR13266627
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13266092
|
Pre-XDR-TB
|
lineage2.2.1;lineage4
|
None
|
ERR4800089
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR13261289
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4797102
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4796269
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR25827709
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR25827448
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4796627
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR25827781
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR4796712
|
MDR-TB
|
lineage2.2.1
|
in
|
SRR25827327
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR22175244
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4796677
|
MDR-TB
|
lineage2.2.1
|
in
|
ERR4800461
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4831013
|
Pre-XDR-TB
|
lineage2.2.1
|
np
|
ERR4796378
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4798080
|
MDR-TB
|
lineage2.2.1
|
in
|
SRR25827362
|
XDR-TB
|
lineage2.2.1;lineage3
|
None
|
ERR4797864
|
MDR-TB
|
lineage2.2.1
|
in
|
ERR4796816
|
Pre-XDR-TB
|
lineage2.2.1.1
|
in
|
ERR4800406
|
MDR-TB
|
lineage2.2.1
|
in
|
ERR4796937
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4799635
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR13267059
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR25827838
|
Pre-XDR-TB
|
lineage2.2.1.1
|
None
|
SRR22175255
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4797794
|
MDR-TB
|
lineage2.2.1
|
in
|
ERR4830958
|
Pre-XDR-TB
|
lineage2.2.1
|
np
|
ERR4798633
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR28351380
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4797297
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4797651
|
MDR-TB
|
lineage2.2.1
|
in
|
SRR22424822
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR25827731
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR25827851
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13266749
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4796906
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4800537
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR28044655
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4799794
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4796388
|
MDR-TB
|
lineage2.2.1
|
in
|
SRR22424818
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4796628
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR25827804
|
Pre-XDR-TB
|
lineage2.2.1;lineage3.1
|
None
|
ERR4796700
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4798044
|
MDR-TB
|
lineage2.2.1
|
in
|
ERR4798339
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR26112471
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR22175249
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4798425
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR28044338
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4798134
|
MDR-TB
|
lineage2.2.1
|
in
|
ERR13260014
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|