Rv1979c - c.-521G>A
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
198 Sensitive
18 RR-TB
10 HR-TB
10 MDR-TB
0 Pre-XDR-TB
0 XDR-TB
24 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage2.2.1 | 212 |
| lineage4.1.2.1 | 30 |
| lineage2.2.1;lineage4 | 2 |
| lineage1.1.2 | 4 |
| lineage4.2.1 | 1 |
| lineage2.2.1;lineage4.3.2.1 | 2 |
| lineage1.2.2.2;lineage2.2.1 | 4 |
| lineage2.2.1;lineage4.3.2 | 2 |
| lineage2.2.1;lineage6.1.3 | 1 |
| lineage1.1.1 | 1 |
| lineage1.1.2;lineage3 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 260 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR19324963 | Other | lineage2.2.1 | None | SRR14164917 | Other | lineage4.1.2.1 | None | SRR10869106 | Sensitive | lineage2.2.1 | None | SRR10869119 | MDR-TB | lineage2.2.1 | None | SRR1181162 | Sensitive | lineage2.2.1 | None | SRR6896413 | Sensitive | lineage2.2.1 | None | SRR6896514 | Sensitive | lineage2.2.1 | None | SRR1184004 | Sensitive | lineage2.2.1 | None | ERR4195228 | Sensitive | lineage4.1.2.1 | None | ERR495187 | Sensitive | lineage2.2.1 | None | ERR2653000 | Other | lineage4.1.2.1 | None | ERR5987380 | RR-TB | lineage2.2.1 | None | ERR10112849 | Sensitive | lineage2.2.1 | None | SRR26331643 | RR-TB | lineage2.2.1 | None | SRR29055527 | MDR-TB | lineage2.2.1 | None | SRR6856032 | Sensitive | lineage2.2.1 | None | SRR29093750 | Sensitive | lineage2.2.1 | None | SRR6982124 | Sensitive | lineage2.2.1 | None | SRR1180398 | Sensitive | lineage2.2.1 | None | SRR29093972 | Sensitive | lineage2.2.1 | None | ERR1633896 | Sensitive | lineage2.2.1 | za | ERR1633955 | Sensitive | lineage2.2.1 | za | SRR10869204 | Sensitive | lineage2.2.1 | None | SRR6896444 | Other | lineage2.2.1;lineage4 | None | ERR13260473 | Sensitive | lineage2.2.1 | None | ERR4820712 | Sensitive | lineage2.2.1 | None | SRR21276922 | MDR-TB | lineage2.2.1 | None | SRR15399222 | Other | lineage4.1.2.1 | None | ERR1633961 | Sensitive | lineage2.2.1 | za | SRR14164416 | Other | lineage4.1.2.1 | None | ERR4809108 | HR-TB | lineage2.2.1 | za | SRR15399212 | Other | lineage4.1.2.1 | None | ERR4809050 | Sensitive | lineage2.2.1 | za | ERR11774865 | Sensitive | lineage2.2.1 | None | ERR1035882 | RR-TB | lineage2.2.1 | None | SRR28045903 | Sensitive | lineage1.1.2 | None | SRR9971358 | MDR-TB | lineage2.2.1 | None | ERR8700404 | Sensitive | lineage2.2.1 | None | ERR1023496 | Sensitive | lineage2.2.1 | None | SRR10868967 | Sensitive | lineage2.2.1 | None | ERR1023462 | Sensitive | lineage2.2.1 | None | ERR8699746 | Sensitive | lineage2.2.1 | None | ERR1023423 | Sensitive | lineage2.2.1 | None | ERR1633928 | Sensitive | lineage2.2.1 | za | ERR8699088 | Sensitive | lineage2.2.1 | None | ERR8699824 | Sensitive | lineage2.2.1 | None | SRR10315516 | Sensitive | lineage2.2.1 | None | SRR2101176 | Sensitive | lineage4.1.2.1 | None | SRR2101374 | Sensitive | lineage2.2.1 | None | SRR2101448 | Sensitive | lineage2.2.1 | None | SRR2101620 | Sensitive | lineage2.2.1 | None | SRR2101741 | HR-TB | lineage2.2.1 | None | SAMEA2534330 | Sensitive | lineage2.2.1 | sz | SRR6045292 | Sensitive | lineage2.2.1 | gb | SAMN02585953 | Sensitive | lineage2.2.1 | za | SRR4033225 | Sensitive | lineage2.2.1 | za | SRR6930885 | MDR-TB | lineage2.2.1 | None | ERR330738 | Sensitive | lineage4.1.2.1 | None | SRR29056056 | Sensitive | lineage2.2.1 | None | ERR11730267 | Sensitive | lineage2.2.1 | None | SRR29093224 | Sensitive | lineage2.2.1 | None | SRR29093137 | Sensitive | lineage2.2.1 | None | SRR6896437 | Sensitive | lineage2.2.1 | None | SRR15399217 | Other | lineage4.1.2.1 | None | SRR4033214 | Sensitive | lineage2.2.1 | za | SRR5067705 | HR-TB | lineage2.2.1 | vn | SRR15316388 | MDR-TB | lineage2.2.1 | None | SRR6896471 | Sensitive | lineage2.2.1 | None | ERR10610056 | RR-TB | lineage2.2.1 | None | SRR15369006 | Sensitive | lineage2.2.1 | None | SRR29096504 | Sensitive | lineage2.2.1 | None | SRR10869202 | Sensitive | lineage2.2.1 | None | ERR13291950 | Sensitive | lineage2.2.1 | None | ERR2515556 | Sensitive | lineage2.2.1 | za | ERR13289267 | Sensitive | lineage2.2.1 | None | ERR2515607 | Sensitive | lineage2.2.1 | za | ERR2515289 | Sensitive | lineage2.2.1 | None | ERR2515769 | Sensitive | lineage2.2.1 | za | ERR2515119 | Sensitive | lineage2.2.1 | za | SRR9971023 | Sensitive | lineage2.2.1 | None | SRR6855926 | Sensitive | lineage2.2.1 | None | SRR6856101 | Sensitive | lineage2.2.1 | None | ERR551983 | Sensitive | lineage2.2.1;lineage4 | None | SRR6832079 | HR-TB | lineage4.2.1 | None | SRR10869165 | Sensitive | lineage2.2.1 | None | SRR26331607 | RR-TB | lineage2.2.1 | None | SRR6896414 | Sensitive | lineage2.2.1 | None | ERR551980 | Sensitive | lineage2.2.1 | None | SRR6855816 | Sensitive | lineage2.2.1 | None | SRR6855959 | Sensitive | lineage2.2.1 | None | SRR10315552 | Sensitive | lineage4.1.2.1 | None | ERR108161 | Sensitive | lineage2.2.1 | za | ERR4816884 | Sensitive | lineage2.2.1 | None | SRR29230768 | Sensitive | lineage1.1.2 | None | ERR9119829 | RR-TB | lineage2.2.1 | None | SRR10869052 | Sensitive | lineage2.2.1 | None | SRR1180278 | Sensitive | lineage2.2.1;lineage4.3.2.1 | None | SRR1184129 | Sensitive | lineage1.2.2.2;lineage2.2.1 | None | ERR9119872 | RR-TB | lineage2.2.1 | None | SRR6855785 | Sensitive | lineage2.2.1 | None | SRR10869138 | Sensitive | lineage2.2.1 | None | ERR9119807 | Sensitive | lineage2.2.1 | None | ERR4814804 | Other | lineage2.2.1 | None | ERR13291838 | Sensitive | lineage2.2.1 | None | SRR14164852 | Other | lineage4.1.2.1 | None | SRR29230963 | Sensitive | lineage1.1.2 | None | SRR29016952 | Other | lineage4.1.2.1 | None | SRR1183107 | Sensitive | lineage1.2.2.2;lineage2.2.1 | None | SRR29055577 | Sensitive | lineage2.2.1 | None | SRR26331608 | RR-TB | lineage2.2.1 | None | ERR13193992 | Sensitive | lineage2.2.1 | None | SRR6896385 | Sensitive | lineage2.2.1 | None | SRR6981980 | HR-TB | lineage2.2.1 | None | SRR22251352 | Sensitive | lineage2.2.1 | None | SRR29094030 | Sensitive | lineage2.2.1 | None | ERR11082212 | Sensitive | lineage2.2.1 | None | ERR13273026 | Sensitive | lineage2.2.1 | None | SRR7755674 | HR-TB | lineage2.2.1 | None | SRR14164776 | Other | lineage4.1.2.1 | None | SRR6896598 | Sensitive | lineage2.2.1 | None | ERR4819988 | Sensitive | lineage2.2.1 | gb | ERR6362949 | RR-TB | lineage2.2.1 | None | SRR4033168 | Sensitive | lineage2.2.1 | za | SRR4033179 | Sensitive | lineage2.2.1 | za | SRR1181382 | Sensitive | lineage2.2.1;lineage4.3.2 | None | ERR11252394 | Sensitive | lineage2.2.1 | None | SRR18213875 | Sensitive | lineage4.1.2.1 | None | ERR10748531 | MDR-TB | lineage2.2.1 | None | ERR1023528 | Sensitive | lineage2.2.1 | None | SRR6153045 | Sensitive | lineage2.2.1 | ca | ERR4830503 | MDR-TB | lineage2.2.1 | None | ERR8700385 | Sensitive | lineage2.2.1 | None | ERR7737740 | RR-TB | lineage2.2.1 | None | ERR9806629 | RR-TB | lineage2.2.1 | None | ERR8700368 | Sensitive | lineage2.2.1 | None | ERR495181 | Sensitive | lineage2.2.1 | None | ERR8975087 | Sensitive | lineage2.2.1 | None | ERR8975559 | Sensitive | lineage2.2.1 | None | ERR8975661 | RR-TB | lineage2.2.1 | None | ERR2515723 | RR-TB | lineage2.2.1 | None | ERR8976076 | RR-TB | lineage2.2.1 | None | SRR1183136 | Sensitive | lineage2.2.1 | None | SRR21710577 | Sensitive | lineage2.2.1 | None | SRR6855937 | Sensitive | lineage2.2.1 | None | SRR6896596 | RR-TB | lineage2.2.1 | None | ERR552839 | Other | lineage4.1.2.1 | de | ERR4818939 | Sensitive | lineage4.1.2.1 | gb | ERR4821809 | Other | lineage4.1.2.1 | gb | ERR2512997 | Sensitive | lineage2.2.1 | gb | ERR2514848 | HR-TB | lineage2.2.1 | gb | ERR2512780 | HR-TB | lineage2.2.1;lineage6.1.3 | gb | ERR2515940 | Sensitive | lineage2.2.1 | za | ERR2515716 | Sensitive | lineage2.2.1 | za | ERR2515273 | Sensitive | lineage2.2.1 | za | ERR2515308 | Sensitive | lineage2.2.1 | za | ERR2515271 | Sensitive | lineage2.2.1 | za | ERR2515805 | Sensitive | lineage2.2.1 | za | ERR2515469 | Sensitive | lineage2.2.1 | za | ERR2515462 | Sensitive | lineage2.2.1 | za | ERR2515464 | Sensitive | lineage2.2.1 | za | ERR2516076 | Sensitive | lineage4.1.2.1 | za | ERR2515453 | Sensitive | lineage2.2.1 | za | ERR2515681 | Sensitive | lineage2.2.1 | za | ERR2515885 | Sensitive | lineage2.2.1 | za | ERR2515778 | Sensitive | lineage2.2.1 | za | ERR2516080 | Sensitive | lineage2.2.1 | za | ERR2515902 | Sensitive | lineage2.2.1 | za | ERR2515241 | Sensitive | lineage2.2.1 | za | SAMN02585899 | Sensitive | lineage2.2.1;lineage4.3.2.1 | za | SAMN02585909 | Sensitive | lineage2.2.1 | za | SAMN02585916 | Sensitive | lineage2.2.1 | za | ERR279595 | Sensitive | lineage2.2.1 | None | SRR10315515 | Sensitive | lineage2.2.1 | None | SRR14164790 | Other | lineage4.1.2.1 | None | ERR2515397 | Sensitive | lineage2.2.1 | None | SRR1181324 | Sensitive | lineage2.2.1 | None | ERR2516033 | Sensitive | lineage2.2.1 | za | ERR108162 | Sensitive | lineage2.2.1 | za | ERR8975831 | Sensitive | lineage2.2.1 | None | SRR6855699 | Sensitive | lineage2.2.1 | None | SRR6855796 | Sensitive | lineage2.2.1 | None | ERR8699775 | Sensitive | lineage2.2.1 | None | ERR2679299 | Sensitive | lineage1.1.1 | None | SRR7069487 | HR-TB | lineage2.2.1 | None | ERR6361960 | Sensitive | lineage2.2.1 | None | ERR279650 | Sensitive | lineage2.2.1 | None | SRR6896488 | Sensitive | lineage2.2.1 | None | SRR9971155 | Sensitive | lineage2.2.1 | None | ERR495156 | Sensitive | lineage2.2.1 | None | SRR7131147 | Other | lineage4.1.2.1 | None | ERR13260864 | Other | lineage2.2.1 | None | SRR1180143 | Sensitive | lineage1.2.2.2;lineage2.2.1 | None | ERR495126 | Sensitive | lineage2.2.1 | None | SRR21722246 | Sensitive | lineage2.2.1 | None | SRR6896495 | Sensitive | lineage2.2.1 | None | ERR2652981 | Sensitive | lineage4.1.2.1 | None | SRR29093464 | Sensitive | lineage2.2.1 | None | SRR6896206 | Sensitive | lineage2.2.1 | None | SRR6855707 | Sensitive | lineage2.2.1 | None | SRR6855844 | Sensitive | lineage2.2.1 | None | ERR9992814 | RR-TB | lineage2.2.1 | None | ERR10748164 | RR-TB | lineage2.2.1 | None | SRR6855879 | Sensitive | lineage2.2.1 | None | ERR4821475 | Sensitive | lineage2.2.1 | None | SRR6896554 | Sensitive | lineage2.2.1 | None | ERR551982 | Sensitive | lineage2.2.1 | None | SRR1180432 | Sensitive | lineage2.2.1 | None | SRR1181213 | Sensitive | lineage2.2.1 | None | ERR11776021 | Other | lineage4.1.2.1 | None | SRR29053027 | Other | lineage2.2.1 | None | ERR279656 | Sensitive | lineage2.2.1 | None | ERR279625 | Sensitive | lineage2.2.1 | None | SRR1181347 | Sensitive | lineage2.2.1 | None | ERR13260848 | Sensitive | lineage2.2.1 | None | ERR13260856 | Sensitive | lineage2.2.1 | None | SRR25340766 | Sensitive | lineage1.1.2;lineage3 | None | ERR4195686 | Sensitive | lineage4.1.2.1 | None | SRR9971142 | Sensitive | lineage2.2.1 | None | ERR551981 | Sensitive | lineage2.2.1 | None | SRR14165005 | Other | lineage4.1.2.1 | None | SRR10315692 | MDR-TB | lineage2.2.1 | None | SRR4033156 | Sensitive | lineage2.2.1 | za | ERR4814655 | Sensitive | lineage2.2.1 | None | ERR4809235 | Sensitive | lineage2.2.1 | za | SRR28045616 | Sensitive | lineage1.1.2 | None | SRR6152661 | Sensitive | lineage2.2.1 | ca | ERR8700396 | Sensitive | lineage2.2.1 | None | ERR8700403 | Sensitive | lineage2.2.1 | None | ERR8975147 | Sensitive | lineage2.2.1 | None | SRR9971141 | MDR-TB | lineage2.2.1 | None | ERR8975836 | Sensitive | lineage2.2.1 | None | SRR14164880 | Other | lineage4.1.2.1 | None | SRR6982121 | Sensitive | lineage2.2.1 | None | ERR8975117 | Sensitive | lineage2.2.1 | None | ERR8975125 | Sensitive | lineage2.2.1 | None | ERR4815693 | Other | lineage4.1.2.1 | gb | ERR550872 | Sensitive | lineage4.1.2.1 | sz | SRR1181370 | Sensitive | lineage2.2.1 | None | SRR15368887 | Sensitive | lineage2.2.1 | None | ERR13290101 | Sensitive | lineage2.2.1 | None | SRR6982560 | Sensitive | lineage2.2.1 | None | SRR26331622 | RR-TB | lineage2.2.1 | None | SRR1182973 | Sensitive | lineage2.2.1;lineage4.3.2 | None | SRR1180253 | Sensitive | lineage2.2.1 | None | SRR9971290 | Sensitive | lineage4.1.2.1 | None | SRR15399226 | Other | lineage4.1.2.1 | None | SRR6855791 | Sensitive | lineage2.2.1 | None | SRR6855878 | Sensitive | lineage2.2.1 | None | SRR1181059 | Sensitive | lineage1.2.2.2;lineage2.2.1 | None | ERR019569 | Sensitive | lineage2.2.1 | None | SRR1180268 | Sensitive | lineage2.2.1 | None | ERR2515214 | Sensitive | lineage2.2.1 | za | ERR4821085 | Other | lineage2.2.1 | None | SRR10868964 | Sensitive | lineage2.2.1 | None | ERR2514157 | HR-TB | lineage2.2.1 | None | SRR1180418 | Sensitive | lineage2.2.1 | None | SRR1181002 | Sensitive | lineage2.2.1 | None | ERR13260785 | Sensitive | lineage2.2.1 | None | SRR28046220 | Sensitive | lineage2.2.1 | None | SRR6855921 | Sensitive | lineage4.1.2.1 | None |
|---|
