Rv2043c - p.Ala146Val
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
0 Sensitive
2 RR-TB
2 HR-TB
186 MDR-TB
104 Pre-XDR-TB
7 XDR-TB
2 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.8 | 212 |
| lineage2.2.1 | 38 |
| lineage4.1.2.1 | 2 |
| lineage2.2.1.1 | 15 |
| lineage4.1.2.1;lineage4.8 | 3 |
| lineage1.1.2 | 2 |
| lineage4 | 2 |
| lineage1.1.1 | 1 |
| lineage2.2.2 | 6 |
| lineage4.3.4.1 | 2 |
| lineage4.3.4.2 | 5 |
| lineage4.6.2.2;lineage6.3.1 | 2 |
| lineage1.2.1.2.1 | 2 |
| lineage4.2.2 | 2 |
| lineage4.2.1 | 1 |
| lineage4.3.2 | 2 |
| lineage4.6.2.2 | 3 |
| lineage4.1.1.3.1 | 2 |
| lineage4.1.1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 303 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR4829530 | Pre-XDR-TB | lineage4.8 | None | SRR29273654 | MDR-TB | lineage4.8 | None | SRR10040217 | Pre-XDR-TB | lineage2.2.1 | None | SRR29273784 | MDR-TB | lineage4.8 | None | SRR29274060 | MDR-TB | lineage4.8 | None | SRR29273930 | Pre-XDR-TB | lineage4.8 | None | ERR5865411 | Pre-XDR-TB | lineage2.2.1 | None | SRR29273632 | MDR-TB | lineage4.8 | None | SRR29274099 | MDR-TB | lineage4.8 | None | ERR9119847 | MDR-TB | lineage2.2.1 | None | SRR29274148 | MDR-TB | lineage4.8 | None | SRR29341607 | Pre-XDR-TB | lineage4.8 | None | SRR26936990 | MDR-TB | lineage2.2.1 | None | SRR29274173 | MDR-TB | lineage4.8 | None | SRR7592369 | MDR-TB | lineage4.8 | None | SRR29274154 | MDR-TB | lineage4.8 | None | SRR29273942 | MDR-TB | lineage4.8 | None | ERR13264917 | MDR-TB | lineage4.8 | None | SRR29273620 | MDR-TB | lineage4.1.2.1 | None | SRR16370556 | MDR-TB | lineage2.2.1.1 | None | SRR29273730 | MDR-TB | lineage4.8 | None | SRR29273749 | MDR-TB | lineage4.8 | None | ERR5865412 | Pre-XDR-TB | lineage2.2.1 | None | SRR29273613 | Pre-XDR-TB | lineage4.8 | None | ERR1163056 | MDR-TB | lineage4.8 | None | SRR29274180 | MDR-TB | lineage4.1.2.1;lineage4.8 | None | SRR29273676 | MDR-TB | lineage4.8 | None | ERR4276875 | MDR-TB | lineage4.8 | None | SRR29273615 | Pre-XDR-TB | lineage4.8 | None | SRR29341610 | Pre-XDR-TB | lineage4.8 | None | SRR8552930 | Other | lineage1.1.2 | None | ERR3335747 | Pre-XDR-TB | lineage4 | pk | ERR10680047 | MDR-TB | lineage1.1.1 | None | ERR1163058 | MDR-TB | lineage4.8 | None | SRR9738544 | Pre-XDR-TB | lineage4.8 | None | SRR29273631 | MDR-TB | lineage4.8 | None | SRR29274100 | MDR-TB | lineage4.8 | None | SRR29274011 | MDR-TB | lineage4.8 | None | SRR23086726 | Pre-XDR-TB | lineage4.8 | None | SRR29341460 | XDR-TB | lineage4.8 | None | ERR4829880 | Pre-XDR-TB | lineage4.8 | it | SAMN02414911 | MDR-TB | lineage4.8 | se | SRR25207165 | Pre-XDR-TB | lineage2.2.1 | None | ERR13194117 | MDR-TB | lineage2.2.2 | None | SRR1049054 | Pre-XDR-TB | lineage2.2.2 | None | SRR1049055 | Pre-XDR-TB | lineage2.2.2 | None | SRR1175470 | Pre-XDR-TB | lineage4.8 | ro | ERR5865410 | Pre-XDR-TB | lineage2.2.1 | None | ERR2864236 | MDR-TB | lineage4.3.4.1 | pt | ERR4811162 | Pre-XDR-TB | lineage2.2.1 | cn | SRR28394016 | RR-TB | lineage4.3.4.2 | None | SRR28646110 | MDR-TB | lineage4.8 | None | ERR4831645 | MDR-TB | lineage2.2.1 | vn | ERR4831598 | MDR-TB | lineage2.2.1.1 | vn | ERR7911121 | MDR-TB | lineage2.2.1.1 | vn | ERR4831725 | MDR-TB | lineage2.2.1.1 | None | ERR4828724 | MDR-TB | lineage2.2.1.1 | None | ERR7911183 | MDR-TB | lineage2.2.1.1 | vn | ERR7911503 | MDR-TB | lineage2.2.1.1 | vn | ERR4828870 | Pre-XDR-TB | lineage4.8 | None | ERR4829371 | Pre-XDR-TB | lineage4.8 | it | ERR4829568 | Pre-XDR-TB | lineage4.8 | it | ERR4829109 | MDR-TB | lineage4.8 | it | ERR4829789 | Pre-XDR-TB | lineage4.8 | it | ERR9896094 | MDR-TB | lineage4.8 | None | SRR7341662 | MDR-TB | lineage4.8 | ro | SRR7341688 | MDR-TB | lineage4.8 | ro | SRR7341656 | MDR-TB | lineage4.8 | ro | SRR7341679 | MDR-TB | lineage4.8 | ro | SRR7341677 | MDR-TB | lineage4.8 | ro | SRR7341697 | MDR-TB | lineage4.8 | ro | SRR7341645 | MDR-TB | lineage4.8 | ro | SRR7341665 | MDR-TB | lineage4.8 | ro | SRR7341696 | MDR-TB | lineage4.8 | ro | SRR7341687 | Pre-XDR-TB | lineage4.8 | ro | SRR7341666 | MDR-TB | lineage4.8 | ro | SRR7341670 | MDR-TB | lineage4.8 | ro | SRR7341642 | MDR-TB | lineage4.8 | ro | SRR7341638 | MDR-TB | lineage4.8 | ro | ERR2517008 | Pre-XDR-TB | lineage4.8 | gb | ERR2516463 | Pre-XDR-TB | lineage4.3.4.2 | pe | ERR4817721 | MDR-TB | lineage4.8 | gb | ERR4819070 | MDR-TB | lineage4.8 | gb | SRR24466763 | MDR-TB | lineage4.8 | None | SRR998828 | Pre-XDR-TB | lineage4.6.2.2;lineage6.3.1 | None | SRR16370369 | MDR-TB | lineage2.2.1 | None | ERR1163055 | MDR-TB | lineage4.8 | None | SRR29273907 | MDR-TB | lineage4.8 | None | SRR5067438 | HR-TB | lineage2.2.1.1 | vn | SRR28646081 | MDR-TB | lineage4.8 | None | SRR5073998 | MDR-TB | lineage2.2.1.1 | vn | SRR3082124 | MDR-TB | lineage4.8 | None | ERR3639707 | MDR-TB | lineage4.8 | None | SRR9738555 | Pre-XDR-TB | lineage4.8 | None | SRR29273915 | MDR-TB | lineage4.8 | None | ERR2510657 | MDR-TB | lineage4.8 | it | ERR13276295 | MDR-TB | lineage4.8 | None | ERR2510689 | MDR-TB | lineage4.8 | it | ERR1163057 | MDR-TB | lineage4.8 | None | ERR2510832 | MDR-TB | lineage4.8 | it | SRR19115697 | MDR-TB | lineage4.8 | None | ERR13259986 | MDR-TB | lineage1.2.1.2.1 | None | ERR1163048 | Pre-XDR-TB | lineage4.8 | None | SRR29273964 | Pre-XDR-TB | lineage4.8 | None | ERR13264915 | Pre-XDR-TB | lineage4.8 | None | SRR1723461 | MDR-TB | lineage2.2.1 | cn | ERR5865584 | MDR-TB | lineage4.2.2 | None | SRR5486892 | Pre-XDR-TB | lineage4.8 | None | SRR29273849 | MDR-TB | lineage4.8 | None | SRR29273970 | MDR-TB | lineage4.8 | None | SRR29274037 | MDR-TB | lineage4.8 | None | SRR29273857 | MDR-TB | lineage4.8 | None | SRR29273929 | MDR-TB | lineage4.8 | None | SRR23086710 | XDR-TB | lineage4.8 | None | SRR9738543 | MDR-TB | lineage4.8 | None | SRR23086704 | Pre-XDR-TB | lineage4.8 | None | SRR28393623 | Pre-XDR-TB | lineage4.3.4.2 | None | SRR7592380 | Pre-XDR-TB | lineage4.8 | None | SRR29273960 | MDR-TB | lineage4.8 | None | SRR10525373 | MDR-TB | lineage4.8 | None | SRR29341591 | XDR-TB | lineage4.8 | None | SRR29273845 | MDR-TB | lineage4.8 | None | SRR29124293 | Pre-XDR-TB | lineage4.8 | None | SRR29273758 | MDR-TB | lineage4.8 | None | ERR13284058 | MDR-TB | lineage4.8 | None | ERR13290433 | MDR-TB | lineage4.8 | None | ERR4829621 | XDR-TB | lineage4.8 | None | SRR9738482 | MDR-TB | lineage4.8 | None | SRR29273940 | MDR-TB | lineage4.8 | None | SRR29274204 | MDR-TB | lineage4.8 | None | SRR20969423 | Pre-XDR-TB | lineage2.2.1 | None | SRR1166818 | MDR-TB | lineage4.8 | None | SRR29274034 | MDR-TB | lineage4.8 | None | SRR5338521 | MDR-TB | lineage1.2.1.2.1 | None | SRR29274141 | MDR-TB | lineage4.8 | None | ERR1163054 | MDR-TB | lineage4.8 | None | ERR1163052 | MDR-TB | lineage4.8 | None | ERR5987271 | MDR-TB | lineage2.2.1 | None | SRR29273663 | MDR-TB | lineage4.1.2.1 | None | ERR13261546 | Pre-XDR-TB | lineage2.2.1 | None | SRR29273932 | Pre-XDR-TB | lineage4.8 | None | ERR13290430 | MDR-TB | lineage4.8 | None | ERR5865409 | Pre-XDR-TB | lineage2.2.1 | None | SRR10525329 | MDR-TB | lineage4.8 | None | SRR29274065 | MDR-TB | lineage4.8 | None | SRR29273983 | MDR-TB | lineage4.8 | None | SRR29273825 | MDR-TB | lineage4.8 | None | SRR23086709 | Pre-XDR-TB | lineage4.8 | None | SRR29127138 | Pre-XDR-TB | lineage4.8 | None | ERR3335734 | Pre-XDR-TB | lineage4 | pk | ERR4276876 | MDR-TB | lineage4.8 | None | SRR29273611 | MDR-TB | lineage4.8 | None | ERR4797068 | Pre-XDR-TB | lineage2.2.1 | in | ERR4798775 | Pre-XDR-TB | lineage2.2.1 | in | SRR29051391 | MDR-TB | lineage2.2.1.1 | None | SRR23086729 | Pre-XDR-TB | lineage4.8 | None | SRR29273729 | MDR-TB | lineage4.8 | None | ERR4829107 | Pre-XDR-TB | lineage4.8 | None | ERR9121627 | Pre-XDR-TB | lineage4.8 | None | SRR1166130 | MDR-TB | lineage4.8 | ro | SRR1166171 | MDR-TB | lineage4.8 | ro | SRR1166321 | Pre-XDR-TB | lineage4.8 | ro | SRR1166094 | Pre-XDR-TB | lineage4.8 | ro | SRR23086728 | Pre-XDR-TB | lineage4.8 | None | ERR4829791 | XDR-TB | lineage4.8 | None | ERR5865408 | Pre-XDR-TB | lineage2.2.1 | None | ERR7911259 | MDR-TB | lineage4.2.1 | md | ERR4831271 | MDR-TB | lineage4.8 | de | ERR4831720 | MDR-TB | lineage2.2.1.1 | vn | ERR7911153 | MDR-TB | lineage2.2.1 | vn | ERR4822340 | Pre-XDR-TB | lineage4.8 | de | ERR4810982 | Pre-XDR-TB | lineage2.2.1 | cn | ERR7911482 | MDR-TB | lineage2.2.1.1 | vn | ERR4829002 | MDR-TB | lineage4.8 | it | ERR4830685 | MDR-TB | lineage4.3.2 | dz | ERR4828864 | MDR-TB | lineage4.8 | None | ERR4828910 | MDR-TB | lineage4.8 | None | SRR24466748 | MDR-TB | lineage4.8 | None | SRR24799245 | Pre-XDR-TB | lineage4.3.4.2 | None | SRR6824547 | MDR-TB | lineage2.2.1 | cn | SRR29126492 | Pre-XDR-TB | lineage4.8 | None | SRR998827 | MDR-TB | lineage4.6.2.2 | None | SRR11662265 | MDR-TB | lineage2.2.1 | None | ERR1163053 | MDR-TB | lineage4.8 | None | SRR29273896 | MDR-TB | lineage4.8 | None | SRR29273971 | MDR-TB | lineage4.8 | None | SRR29273953 | Pre-XDR-TB | lineage4.8 | None | SRR29274045 | MDR-TB | lineage4.8 | None | ERR4829648 | Pre-XDR-TB | lineage4.8 | None | SRR6511623 | MDR-TB | lineage4.3.4.1 | None | ERR11081377 | MDR-TB | lineage4.8 | None | ERR1163060 | HR-TB | lineage4.8 | None | SRR998826 | MDR-TB | lineage4.6.2.2 | None | ERR2510706 | MDR-TB | lineage4.8 | it | SRR9738536 | Pre-XDR-TB | lineage4.8 | None | ERR4829412 | Pre-XDR-TB | lineage4.8 | it | ERR11069055 | MDR-TB | lineage2.2.1 | None | ERR11067504 | MDR-TB | lineage4.8 | None | ERR2679271 | MDR-TB | lineage4.6.2.2 | None | SRR7592389 | Pre-XDR-TB | lineage4.8 | None | SRR23086717 | XDR-TB | lineage4.8 | None | ERR5865407 | Pre-XDR-TB | lineage2.2.1 | None | ERR1163049 | Pre-XDR-TB | lineage4.8 | None | SRR29273989 | MDR-TB | lineage4.8 | None | SRR29273892 | MDR-TB | lineage4.8 | None | SRR29274020 | MDR-TB | lineage4.8 | None | SRR29274110 | MDR-TB | lineage4.8 | None | SRR29341534 | MDR-TB | lineage4.8 | None | SRR29274217 | Pre-XDR-TB | lineage4.8 | None | SRR29273644 | Pre-XDR-TB | lineage4.8 | None | SRR29126313 | Pre-XDR-TB | lineage4.8 | None | ERR11043546 | MDR-TB | lineage4.8 | None | SRR29273814 | Pre-XDR-TB | lineage4.8 | None | SRR29274123 | MDR-TB | lineage4.8 | None | SRR9738507 | MDR-TB | lineage4.8 | None | SRR998825 | MDR-TB | lineage4.6.2.2;lineage6.3.1 | None | ERR1163051 | MDR-TB | lineage4.8 | None | SRR20969770 | Pre-XDR-TB | lineage2.2.1 | None | ERR13284193 | MDR-TB | lineage4.8 | None | SRR29273903 | MDR-TB | lineage4.8 | None | ERR4829834 | MDR-TB | lineage4.8 | None | SRR24466794 | MDR-TB | lineage4.8 | None | SRR16370281 | MDR-TB | lineage2.2.1.1 | None | SRR7131179 | MDR-TB | lineage2.2.1 | None | SRR29124291 | XDR-TB | lineage4.8 | None | SRR7781495 | Pre-XDR-TB | lineage4.8 | None | ERR13290431 | MDR-TB | lineage4.8 | None | SRR22424798 | Pre-XDR-TB | lineage2.2.1 | None | SRR29274028 | MDR-TB | lineage4.8 | None | SRR29273704 | MDR-TB | lineage4.8 | None | SRR29126320 | Pre-XDR-TB | lineage4.8 | None | SRR29274132 | MDR-TB | lineage4.8 | None | ERR10748239 | MDR-TB | lineage2.2.1 | None | SRR29273606 | MDR-TB | lineage4.8 | None | SRR9738488 | Pre-XDR-TB | lineage4.8 | None | ERR13284229 | MDR-TB | lineage4.8 | None | SRR13180429 | MDR-TB | lineage4.8 | None | SRR7592361 | Pre-XDR-TB | lineage4.8 | None | SRR5486897 | Pre-XDR-TB | lineage4.8 | None | SRR29273717 | MDR-TB | lineage4.8 | None | ERR4829795 | MDR-TB | lineage4.8 | None | SRR29126177 | Pre-XDR-TB | lineage4.8 | None | SRR29273928 | Pre-XDR-TB | lineage4.8 | None | ERR4796782 | Other | lineage1.1.2 | in | ERR4797069 | Pre-XDR-TB | lineage2.2.1 | in | SRR1162814 | MDR-TB | lineage4.8 | None | SRR5486868 | MDR-TB | lineage4.8 | None | ERR4383951 | MDR-TB | lineage4.3.2 | None | ERR13290432 | MDR-TB | lineage4.8 | None | SRR5486906 | Pre-XDR-TB | lineage4.8 | None | SRR9738521 | MDR-TB | lineage4.8 | None | SRR23086707 | Pre-XDR-TB | lineage4.8 | None | SRR9738493 | Pre-XDR-TB | lineage4.8 | None | SRR29273891 | MDR-TB | lineage4.8 | None | SRR1166121 | MDR-TB | lineage4.8 | ro | SRR1166190 | Pre-XDR-TB | lineage4.8 | ro | ERR4195569 | Pre-XDR-TB | lineage4.8 | None | SRR1013658 | Pre-XDR-TB | lineage2.2.2 | None | SRR1013659 | Pre-XDR-TB | lineage2.2.2 | None | SRR25207081 | Pre-XDR-TB | lineage2.2.1 | None | SAMN02360608 | Pre-XDR-TB | lineage2.2.2 | kr | SRR1146384 | MDR-TB | lineage4.8 | None | ERR7911113 | MDR-TB | lineage2.2.1.1 | vn | ERR4831660 | Pre-XDR-TB | lineage2.2.1 | vn | ERR4831599 | MDR-TB | lineage2.2.1.1 | vn | ERR4829602 | Pre-XDR-TB | lineage4.8 | it | ERR4829396 | Pre-XDR-TB | lineage4.8 | None | ERR4829926 | Pre-XDR-TB | lineage4.8 | it | SRR9738517 | Pre-XDR-TB | lineage4.8 | None | ERR228062 | Pre-XDR-TB | lineage2.2.1 | ru | ERR2516478 | Pre-XDR-TB | lineage4.3.4.2 | pe | SRR8649108 | Pre-XDR-TB | lineage4.8 | None | SRR9738505 | Pre-XDR-TB | lineage4.8 | None | SRR5486875 | Pre-XDR-TB | lineage4.8 | None | SRR7592334 | MDR-TB | lineage4.8 | None | SRR28646082 | MDR-TB | lineage4.1.2.1;lineage4.8 | None | SRR22048307 | MDR-TB | lineage4.8 | None | SRR2469373 | Pre-XDR-TB | lineage4.1.1.3.1 | None | SRR25206894 | Pre-XDR-TB | lineage2.2.1 | None | SRR9738528 | Pre-XDR-TB | lineage4.8 | None | SRR10525348 | MDR-TB | lineage4.8 | None | ERR278519 | Pre-XDR-TB | lineage4.1.1.3.1 | None | ERR2510685 | MDR-TB | lineage4.8 | it | SRR7592322 | MDR-TB | lineage4.8 | None | ERR2516136 | Pre-XDR-TB | lineage4.8 | es | SRR1144821 | MDR-TB | lineage4.8 | None | ERR1163047 | MDR-TB | lineage4.8 | None | ERR13284713 | MDR-TB | lineage2.2.1 | None | SRR7654035 | MDR-TB | lineage2.2.1 | None | SRR23086708 | Pre-XDR-TB | lineage4.8 | None | SRR25207235 | Pre-XDR-TB | lineage2.2.1 | None | ERR11043439 | MDR-TB | lineage4.8 | None | SRR29273875 | MDR-TB | lineage4.8 | None | SRR29274005 | MDR-TB | lineage4.8 | None | SRR29274128 | MDR-TB | lineage4.8 | None | SRR28045583 | Pre-XDR-TB | lineage4.1.1 | None | ERR5865585 | MDR-TB | lineage4.2.2 | None | SRR29273958 | MDR-TB | lineage4.8 | None | SRR29274184 | MDR-TB | lineage4.1.2.1;lineage4.8 | None | SRR29273623 | MDR-TB | lineage4.8 | None | SRR29274023 | MDR-TB | lineage4.8 | None | SRR29385418 | RR-TB | lineage2.2.1 | None | ERR7737785 | MDR-TB | lineage2.2.1 | None |
|---|
