SRR29273970
|
MDR-TB
|
lineage4.8
|
None
|
SRR29273857
|
MDR-TB
|
lineage4.8
|
None
|
ERR11043546
|
MDR-TB
|
lineage4.8
|
None
|
SRR29385418
|
RR-TB
|
lineage2.2.1
|
None
|
SRR7592380
|
Pre-XDR-TB
|
lineage4.8
|
None
|
ERR7737785
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29273654
|
MDR-TB
|
lineage4.8
|
None
|
SRR9738507
|
MDR-TB
|
lineage4.8
|
None
|
SRR29273960
|
MDR-TB
|
lineage4.8
|
None
|
ERR1163051
|
MDR-TB
|
lineage4.8
|
None
|
SRR29273903
|
MDR-TB
|
lineage4.8
|
None
|
SRR10525373
|
MDR-TB
|
lineage4.8
|
None
|
SRR16370281
|
MDR-TB
|
lineage2.2.1.1
|
None
|
ERR13284713
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29124293
|
Pre-XDR-TB
|
lineage4.8
|
None
|
SRR29274173
|
MDR-TB
|
lineage4.8
|
None
|
SRR7592369
|
MDR-TB
|
lineage4.8
|
None
|
SRR9738482
|
MDR-TB
|
lineage4.8
|
None
|
SRR29274154
|
MDR-TB
|
lineage4.8
|
None
|
ERR13290431
|
MDR-TB
|
lineage4.8
|
None
|
SRR22424798
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29274204
|
MDR-TB
|
lineage4.8
|
None
|
SRR29273942
|
MDR-TB
|
lineage4.8
|
None
|
ERR13264917
|
MDR-TB
|
lineage4.8
|
None
|
SRR20969423
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1166818
|
MDR-TB
|
lineage4.8
|
None
|
SRR29274034
|
MDR-TB
|
lineage4.8
|
None
|
SRR5338521
|
MDR-TB
|
lineage1.2.1.2.1
|
None
|
SRR5073998
|
MDR-TB
|
lineage2.2.1.1
|
vn
|
ERR1163054
|
MDR-TB
|
lineage4.8
|
None
|
ERR5865412
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR10748239
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR1163052
|
MDR-TB
|
lineage4.8
|
None
|
SRR29273606
|
MDR-TB
|
lineage4.8
|
None
|
SRR29273663
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR13261546
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29274180
|
MDR-TB
|
lineage4.1.2.1;lineage4.8
|
None
|
SRR9738488
|
Pre-XDR-TB
|
lineage4.8
|
None
|
ERR13284229
|
MDR-TB
|
lineage4.8
|
None
|
ERR13290430
|
MDR-TB
|
lineage4.8
|
None
|
ERR4276875
|
MDR-TB
|
lineage4.8
|
None
|
SRR29341610
|
Pre-XDR-TB
|
lineage4.8
|
None
|
SRR10525329
|
MDR-TB
|
lineage4.8
|
None
|
SRR23086709
|
Pre-XDR-TB
|
lineage4.8
|
None
|
SRR29127138
|
Pre-XDR-TB
|
lineage4.8
|
None
|
ERR1163058
|
MDR-TB
|
lineage4.8
|
None
|
SRR29273717
|
MDR-TB
|
lineage4.8
|
None
|
SRR29273611
|
MDR-TB
|
lineage4.8
|
None
|
SRR29126177
|
Pre-XDR-TB
|
lineage4.8
|
None
|
SRR1166321
|
Pre-XDR-TB
|
lineage4.8
|
ro
|
SRR5486868
|
MDR-TB
|
lineage4.8
|
None
|
SRR29274100
|
MDR-TB
|
lineage4.8
|
None
|
ERR4383951
|
MDR-TB
|
lineage4.3.2
|
None
|
SRR9738521
|
MDR-TB
|
lineage4.8
|
None
|
SRR29274011
|
MDR-TB
|
lineage4.8
|
None
|
SRR23086726
|
Pre-XDR-TB
|
lineage4.8
|
None
|
SRR23086707
|
Pre-XDR-TB
|
lineage4.8
|
None
|
ERR4831598
|
MDR-TB
|
lineage2.2.1.1
|
vn
|
ERR3335747
|
Pre-XDR-TB
|
lineage4
|
pk
|
SRR9738493
|
Pre-XDR-TB
|
lineage4.8
|
None
|
ERR3335734
|
Pre-XDR-TB
|
lineage4
|
pk
|
SRR25207165
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4195569
|
Pre-XDR-TB
|
lineage4.8
|
None
|
SRR25207081
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SAMN02360608
|
Pre-XDR-TB
|
lineage2.2.2
|
kr
|
SRR1049054
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR1049055
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR1146384
|
MDR-TB
|
lineage4.8
|
None
|
ERR5865408
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28394016
|
RR-TB
|
lineage4.3.4.2
|
None
|
SRR28646110
|
MDR-TB
|
lineage4.8
|
None
|
ERR7911259
|
MDR-TB
|
lineage4.2.1
|
md
|
ERR7911482
|
MDR-TB
|
lineage2.2.1.1
|
vn
|
SRR7341662
|
MDR-TB
|
lineage4.8
|
ro
|
SRR7341688
|
MDR-TB
|
lineage4.8
|
ro
|
SRR7341656
|
MDR-TB
|
lineage4.8
|
ro
|
SRR7341679
|
MDR-TB
|
lineage4.8
|
ro
|
SRR7341677
|
MDR-TB
|
lineage4.8
|
ro
|
SRR7341697
|
MDR-TB
|
lineage4.8
|
ro
|
SRR7341645
|
MDR-TB
|
lineage4.8
|
ro
|
SRR7341665
|
MDR-TB
|
lineage4.8
|
ro
|
SRR7341696
|
MDR-TB
|
lineage4.8
|
ro
|
SRR7341687
|
Pre-XDR-TB
|
lineage4.8
|
ro
|
SRR7341666
|
MDR-TB
|
lineage4.8
|
ro
|
SRR7341670
|
MDR-TB
|
lineage4.8
|
ro
|
SRR7341642
|
MDR-TB
|
lineage4.8
|
ro
|
SRR7341638
|
MDR-TB
|
lineage4.8
|
ro
|
ERR228062
|
Pre-XDR-TB
|
lineage2.2.1
|
ru
|
ERR2516463
|
Pre-XDR-TB
|
lineage4.3.4.2
|
pe
|
ERR2516478
|
Pre-XDR-TB
|
lineage4.3.4.2
|
pe
|
SRR28646082
|
MDR-TB
|
lineage4.1.2.1;lineage4.8
|
None
|
ERR1163053
|
MDR-TB
|
lineage4.8
|
None
|
SRR16370369
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4831660
|
Pre-XDR-TB
|
lineage2.2.1
|
vn
|
ERR1163055
|
MDR-TB
|
lineage4.8
|
None
|
SRR9738528
|
Pre-XDR-TB
|
lineage4.8
|
None
|
SRR1175470
|
Pre-XDR-TB
|
lineage4.8
|
ro
|
ERR4798775
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR28646081
|
MDR-TB
|
lineage4.8
|
None
|
SRR3082124
|
MDR-TB
|
lineage4.8
|
None
|
ERR278519
|
Pre-XDR-TB
|
lineage4.1.1.3.1
|
None
|
SRR19115697
|
MDR-TB
|
lineage4.8
|
None
|
ERR4831720
|
MDR-TB
|
lineage2.2.1.1
|
vn
|
ERR1163047
|
MDR-TB
|
lineage4.8
|
None
|
SRR1166190
|
Pre-XDR-TB
|
lineage4.8
|
ro
|
ERR2679271
|
MDR-TB
|
lineage4.6.2.2
|
None
|
SRR7592389
|
Pre-XDR-TB
|
lineage4.8
|
None
|
SRR29273964
|
Pre-XDR-TB
|
lineage4.8
|
None
|
ERR4811162
|
Pre-XDR-TB
|
lineage2.2.1
|
cn
|
SRR29273958
|
MDR-TB
|
lineage4.8
|
None
|
SRR29274184
|
MDR-TB
|
lineage4.1.2.1;lineage4.8
|
None
|
ERR4828864
|
MDR-TB
|
lineage4.8
|
None
|
SRR29273623
|
MDR-TB
|
lineage4.8
|
None
|
SRR29273644
|
Pre-XDR-TB
|
lineage4.8
|
None
|
SRR29126313
|
Pre-XDR-TB
|
lineage4.8
|
None
|
SRR29274023
|
MDR-TB
|
lineage4.8
|
None
|
SRR23086710
|
XDR-TB
|
lineage4.8
|
None
|
SRR9738543
|
MDR-TB
|
lineage4.8
|
None
|
SRR23086704
|
Pre-XDR-TB
|
lineage4.8
|
None
|
SRR29273814
|
Pre-XDR-TB
|
lineage4.8
|
None
|
SRR29274123
|
MDR-TB
|
lineage4.8
|
None
|
ERR4796782
|
Other
|
lineage1.1.2
|
in
|
ERR13259986
|
MDR-TB
|
lineage1.2.1.2.1
|
None
|
SRR10040217
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29273784
|
MDR-TB
|
lineage4.8
|
None
|
ERR4822340
|
Pre-XDR-TB
|
lineage4.8
|
de
|
SRR29274060
|
MDR-TB
|
lineage4.8
|
None
|
SRR29273930
|
Pre-XDR-TB
|
lineage4.8
|
None
|
ERR5865411
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29273632
|
MDR-TB
|
lineage4.8
|
None
|
SRR29274099
|
MDR-TB
|
lineage4.8
|
None
|
ERR9119847
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29273845
|
MDR-TB
|
lineage4.8
|
None
|
ERR4828870
|
Pre-XDR-TB
|
lineage4.8
|
None
|
SRR29274148
|
MDR-TB
|
lineage4.8
|
None
|
SRR7131179
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29273758
|
MDR-TB
|
lineage4.8
|
None
|
SRR26936990
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29124291
|
XDR-TB
|
lineage4.8
|
None
|
SRR29274028
|
MDR-TB
|
lineage4.8
|
None
|
SRR29273620
|
MDR-TB
|
lineage4.1.2.1
|
None
|
SRR1166121
|
MDR-TB
|
lineage4.8
|
ro
|
SRR16370556
|
MDR-TB
|
lineage2.2.1.1
|
None
|
SRR29273730
|
MDR-TB
|
lineage4.8
|
None
|
SRR29273749
|
MDR-TB
|
lineage4.8
|
None
|
SRR29273704
|
MDR-TB
|
lineage4.8
|
None
|
SRR29274141
|
MDR-TB
|
lineage4.8
|
None
|
ERR5865409
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29274065
|
MDR-TB
|
lineage4.8
|
None
|
SRR29273983
|
MDR-TB
|
lineage4.8
|
None
|
SRR5486897
|
Pre-XDR-TB
|
lineage4.8
|
None
|
ERR13290432
|
MDR-TB
|
lineage4.8
|
None
|
SRR29341460
|
XDR-TB
|
lineage4.8
|
None
|
ERR13194117
|
MDR-TB
|
lineage2.2.2
|
None
|
SRR23086728
|
Pre-XDR-TB
|
lineage4.8
|
None
|
ERR5865410
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR8552930
|
Other
|
lineage1.1.2
|
None
|
ERR9896094
|
MDR-TB
|
lineage4.8
|
None
|
ERR4831725
|
MDR-TB
|
lineage2.2.1.1
|
None
|
SRR9738517
|
Pre-XDR-TB
|
lineage4.8
|
None
|
ERR4817721
|
MDR-TB
|
lineage4.8
|
gb
|
ERR4819070
|
MDR-TB
|
lineage4.8
|
gb
|
SRR8649108
|
Pre-XDR-TB
|
lineage4.8
|
None
|
SRR9738505
|
Pre-XDR-TB
|
lineage4.8
|
None
|
SRR29273896
|
MDR-TB
|
lineage4.8
|
None
|
SRR29273971
|
MDR-TB
|
lineage4.8
|
None
|
SRR29273953
|
Pre-XDR-TB
|
lineage4.8
|
None
|
SRR29274045
|
MDR-TB
|
lineage4.8
|
None
|
ERR4829648
|
Pre-XDR-TB
|
lineage4.8
|
None
|
SRR25206894
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR1163060
|
HR-TB
|
lineage4.8
|
None
|
ERR4831271
|
MDR-TB
|
lineage4.8
|
de
|
SRR9738555
|
Pre-XDR-TB
|
lineage4.8
|
None
|
SRR7654035
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR23086708
|
Pre-XDR-TB
|
lineage4.8
|
None
|
SRR23086717
|
XDR-TB
|
lineage4.8
|
None
|
ERR5865407
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR1163049
|
Pre-XDR-TB
|
lineage4.8
|
None
|
ERR5865584
|
MDR-TB
|
lineage4.2.2
|
None
|
SRR29273989
|
MDR-TB
|
lineage4.8
|
None
|
ERR5865585
|
MDR-TB
|
lineage4.2.2
|
None
|
ERR4810982
|
Pre-XDR-TB
|
lineage2.2.1
|
cn
|
SRR29274037
|
MDR-TB
|
lineage4.8
|
None
|
SRR29273929
|
MDR-TB
|
lineage4.8
|
None
|
SRR28393623
|
Pre-XDR-TB
|
lineage4.3.4.2
|
None
|
SRR1166130
|
MDR-TB
|
lineage4.8
|
ro
|
SRR998825
|
MDR-TB
|
lineage4.6.2.2;lineage6.3.1
|
None
|
SRR20969770
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13284193
|
MDR-TB
|
lineage4.8
|
None
|
ERR4829834
|
MDR-TB
|
lineage4.8
|
None
|
SRR29341591
|
XDR-TB
|
lineage4.8
|
None
|
SRR24466794
|
MDR-TB
|
lineage4.8
|
None
|
SRR29341607
|
Pre-XDR-TB
|
lineage4.8
|
None
|
ERR13284058
|
MDR-TB
|
lineage4.8
|
None
|
ERR13290433
|
MDR-TB
|
lineage4.8
|
None
|
ERR4829530
|
Pre-XDR-TB
|
lineage4.8
|
None
|
ERR4829621
|
XDR-TB
|
lineage4.8
|
None
|
SRR7781495
|
Pre-XDR-TB
|
lineage4.8
|
None
|
ERR4828910
|
MDR-TB
|
lineage4.8
|
None
|
SRR29273940
|
MDR-TB
|
lineage4.8
|
None
|
SRR29126320
|
Pre-XDR-TB
|
lineage4.8
|
None
|
SRR29273613
|
Pre-XDR-TB
|
lineage4.8
|
None
|
SRR29274132
|
MDR-TB
|
lineage4.8
|
None
|
ERR4831599
|
MDR-TB
|
lineage2.2.1.1
|
vn
|
ERR5987271
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR1163056
|
MDR-TB
|
lineage4.8
|
None
|
SRR29273932
|
Pre-XDR-TB
|
lineage4.8
|
None
|
SRR29273676
|
MDR-TB
|
lineage4.8
|
None
|
SRR29273615
|
Pre-XDR-TB
|
lineage4.8
|
None
|
SRR13180429
|
MDR-TB
|
lineage4.8
|
None
|
SRR29273825
|
MDR-TB
|
lineage4.8
|
None
|
SRR7592361
|
Pre-XDR-TB
|
lineage4.8
|
None
|
SRR1166094
|
Pre-XDR-TB
|
lineage4.8
|
ro
|
ERR10680047
|
MDR-TB
|
lineage1.1.1
|
None
|
ERR4797068
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4829795
|
MDR-TB
|
lineage4.8
|
None
|
ERR4276876
|
MDR-TB
|
lineage4.8
|
None
|
SRR29273928
|
Pre-XDR-TB
|
lineage4.8
|
None
|
SRR9738544
|
Pre-XDR-TB
|
lineage4.8
|
None
|
SRR29273631
|
MDR-TB
|
lineage4.8
|
None
|
SRR29051391
|
MDR-TB
|
lineage2.2.1.1
|
None
|
SRR1162814
|
MDR-TB
|
lineage4.8
|
None
|
SRR23086729
|
Pre-XDR-TB
|
lineage4.8
|
None
|
SRR5486906
|
Pre-XDR-TB
|
lineage4.8
|
None
|
SRR6824547
|
MDR-TB
|
lineage2.2.1
|
cn
|
SRR29273729
|
MDR-TB
|
lineage4.8
|
None
|
SRR1723461
|
MDR-TB
|
lineage2.2.1
|
cn
|
SRR29273891
|
MDR-TB
|
lineage4.8
|
None
|
ERR4829107
|
Pre-XDR-TB
|
lineage4.8
|
None
|
ERR9121627
|
Pre-XDR-TB
|
lineage4.8
|
None
|
SRR1013658
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR1013659
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR4829791
|
XDR-TB
|
lineage4.8
|
None
|
ERR2864236
|
MDR-TB
|
lineage4.3.4.1
|
pt
|
ERR7911113
|
MDR-TB
|
lineage2.2.1.1
|
vn
|
ERR7911121
|
MDR-TB
|
lineage2.2.1.1
|
vn
|
ERR7911153
|
MDR-TB
|
lineage2.2.1
|
vn
|
ERR7911183
|
MDR-TB
|
lineage2.2.1.1
|
vn
|
ERR7911503
|
MDR-TB
|
lineage2.2.1.1
|
vn
|
SRR24466748
|
MDR-TB
|
lineage4.8
|
None
|
SRR24799245
|
Pre-XDR-TB
|
lineage4.3.4.2
|
None
|
ERR2517008
|
Pre-XDR-TB
|
lineage4.8
|
gb
|
ERR2516136
|
Pre-XDR-TB
|
lineage4.8
|
es
|
ERR2510657
|
MDR-TB
|
lineage4.8
|
it
|
ERR2510685
|
MDR-TB
|
lineage4.8
|
it
|
ERR2510689
|
MDR-TB
|
lineage4.8
|
it
|
ERR2510706
|
MDR-TB
|
lineage4.8
|
it
|
ERR2510832
|
MDR-TB
|
lineage4.8
|
it
|
ERR4829002
|
MDR-TB
|
lineage4.8
|
it
|
ERR4829926
|
Pre-XDR-TB
|
lineage4.8
|
it
|
ERR4829109
|
MDR-TB
|
lineage4.8
|
it
|
ERR4829371
|
Pre-XDR-TB
|
lineage4.8
|
it
|
ERR4829412
|
Pre-XDR-TB
|
lineage4.8
|
it
|
ERR4829568
|
Pre-XDR-TB
|
lineage4.8
|
it
|
ERR4829602
|
Pre-XDR-TB
|
lineage4.8
|
it
|
ERR4829789
|
Pre-XDR-TB
|
lineage4.8
|
it
|
ERR4830685
|
MDR-TB
|
lineage4.3.2
|
dz
|
SRR2469373
|
Pre-XDR-TB
|
lineage4.1.1.3.1
|
None
|
SRR24466763
|
MDR-TB
|
lineage4.8
|
None
|
SRR5486875
|
Pre-XDR-TB
|
lineage4.8
|
None
|
SRR7592334
|
MDR-TB
|
lineage4.8
|
None
|
SRR998828
|
Pre-XDR-TB
|
lineage4.6.2.2;lineage6.3.1
|
None
|
SRR29126492
|
Pre-XDR-TB
|
lineage4.8
|
None
|
SRR998827
|
MDR-TB
|
lineage4.6.2.2
|
None
|
SRR11662265
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR22048307
|
MDR-TB
|
lineage4.8
|
None
|
ERR4828724
|
MDR-TB
|
lineage2.2.1.1
|
None
|
SRR29273907
|
MDR-TB
|
lineage4.8
|
None
|
SRR10525348
|
MDR-TB
|
lineage4.8
|
None
|
SRR6511623
|
MDR-TB
|
lineage4.3.4.1
|
None
|
ERR11081377
|
MDR-TB
|
lineage4.8
|
None
|
ERR4797069
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR3639707
|
MDR-TB
|
lineage4.8
|
None
|
ERR4829396
|
Pre-XDR-TB
|
lineage4.8
|
None
|
SRR29273915
|
MDR-TB
|
lineage4.8
|
None
|
ERR4829880
|
Pre-XDR-TB
|
lineage4.8
|
it
|
ERR13276295
|
MDR-TB
|
lineage4.8
|
None
|
ERR1163057
|
MDR-TB
|
lineage4.8
|
None
|
SRR7592322
|
MDR-TB
|
lineage4.8
|
None
|
SRR998826
|
MDR-TB
|
lineage4.6.2.2
|
None
|
SRR1166171
|
MDR-TB
|
lineage4.8
|
ro
|
SRR9738536
|
Pre-XDR-TB
|
lineage4.8
|
None
|
SRR1144821
|
MDR-TB
|
lineage4.8
|
None
|
ERR11067504
|
MDR-TB
|
lineage4.8
|
None
|
ERR1163048
|
Pre-XDR-TB
|
lineage4.8
|
None
|
ERR11069055
|
MDR-TB
|
lineage2.2.1
|
None
|
SAMN02414911
|
MDR-TB
|
lineage4.8
|
se
|
ERR13264915
|
Pre-XDR-TB
|
lineage4.8
|
None
|
SRR25207235
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR11043439
|
MDR-TB
|
lineage4.8
|
None
|
SRR5067438
|
HR-TB
|
lineage2.2.1.1
|
vn
|
SRR29273875
|
MDR-TB
|
lineage4.8
|
None
|
SRR29274005
|
MDR-TB
|
lineage4.8
|
None
|
SRR29274128
|
MDR-TB
|
lineage4.8
|
None
|
SRR28045583
|
Pre-XDR-TB
|
lineage4.1.1
|
None
|
SRR29273892
|
MDR-TB
|
lineage4.8
|
None
|
SRR29274020
|
MDR-TB
|
lineage4.8
|
None
|
SRR5486892
|
Pre-XDR-TB
|
lineage4.8
|
None
|
SRR29273849
|
MDR-TB
|
lineage4.8
|
None
|
SRR29274110
|
MDR-TB
|
lineage4.8
|
None
|
SRR29341534
|
MDR-TB
|
lineage4.8
|
None
|
SRR29274217
|
Pre-XDR-TB
|
lineage4.8
|
None
|