SRR3085298
|
Pre-XDR-TB
|
lineage4.1.1.1
|
None
|
SRR16149141
|
MDR-TB
|
lineage4.2.2.1
|
None
|
SRR16149148
|
Pre-XDR-TB
|
lineage4.2.2.1
|
None
|
ERR10610349
|
Pre-XDR-TB
|
lineage4.1.1.1
|
None
|
ERR11488712
|
Pre-XDR-TB
|
lineage4.1.1.1
|
None
|
SRR1165671
|
MDR-TB
|
lineage4.1.1.1
|
None
|
SRR1165218
|
MDR-TB
|
lineage2.2.2;lineage4.1.1.1
|
None
|
ERR551456
|
MDR-TB
|
lineage4.1.1.1
|
sz
|
ERR10748339
|
MDR-TB
|
lineage4.1.1.1
|
None
|
SRR28393343
|
MDR-TB
|
lineage4.4.1.1
|
None
|
SRR1165693
|
Pre-XDR-TB
|
lineage4.1.1.1
|
None
|
SRR16149158
|
Pre-XDR-TB
|
lineage4.2.2.1
|
None
|
ERR10748450
|
Pre-XDR-TB
|
lineage4.1.1.1
|
None
|
SRR1172081
|
MDR-TB
|
lineage4.1.1.1
|
None
|
SRR1165724
|
Pre-XDR-TB
|
lineage4.1.1.1
|
None
|
ERR10748519
|
MDR-TB
|
lineage4.1.1.1
|
None
|
SRR1169225
|
MDR-TB
|
lineage4.1.1.1
|
None
|
SRR1173505
|
MDR-TB
|
lineage4.1.1.1
|
None
|
ERR4423525
|
MDR-TB
|
lineage4.1.1.1
|
None
|
SRR29274234
|
Pre-XDR-TB
|
lineage4.2.2.1
|
None
|
ERR553001
|
MDR-TB
|
lineage4.1.1.1
|
None
|
SRR1169244
|
Pre-XDR-TB
|
lineage4.1.1.1
|
None
|
ERR1034904
|
MDR-TB
|
lineage4.4.1.1
|
pt
|
ERR10748103
|
Pre-XDR-TB
|
lineage4.1.1.1
|
None
|
SRR16149138
|
Pre-XDR-TB
|
lineage4.2.2.1
|
None
|
SRR16149166
|
Pre-XDR-TB
|
lineage4.2.2.1
|
None
|
ERR11489025
|
Pre-XDR-TB
|
lineage4.1.1.1
|
None
|
ERR9125468
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR2515409
|
MDR-TB
|
lineage4.1.1.1
|
za
|
SRR7341703
|
MDR-TB
|
lineage4.4.1.1
|
ro
|
ERR9806822
|
Pre-XDR-TB
|
lineage4.1.1.1
|
None
|
SRR1169313
|
HR-TB
|
lineage4.1.1.1
|
None
|
SRR1169195
|
MDR-TB
|
lineage4.1.1.1
|
None
|
ERR552710
|
Pre-XDR-TB
|
lineage4.1.1.1
|
sz
|
SRR1169145
|
MDR-TB
|
lineage4.1.1.1
|
None
|
SRR7341671
|
MDR-TB
|
lineage4.4.1.1
|
ro
|
SRR7341685
|
MDR-TB
|
lineage4.4.1.1
|
ro
|
ERR11488650
|
MDR-TB
|
lineage4.1.1.1
|
None
|
ERR4830486
|
MDR-TB
|
lineage4.1.1.1
|
za
|
ERR552456
|
Pre-XDR-TB
|
lineage4.1.1.1
|
sz
|
SRR12708410
|
MDR-TB
|
lineage4.1.1.1
|
None
|
ERR11465456
|
MDR-TB
|
lineage4.1.1.1
|
None
|
ERR7737808
|
MDR-TB
|
lineage4.1.1.1
|
None
|
ERR9806689
|
MDR-TB
|
lineage4.1.1.1
|
None
|
SRR1167281
|
MDR-TB
|
lineage4.1.1.1
|
None
|
SRR1165672
|
MDR-TB
|
lineage4.1.1.1
|
None
|
SRR1165656
|
MDR-TB
|
lineage4.1.1.1
|
None
|
ERR551896
|
MDR-TB
|
lineage4.1.1.1
|
sz
|
SAMN02403575
|
Pre-XDR-TB
|
lineage4.1.1.1
|
za
|
ERR10680030
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11488493
|
MDR-TB
|
lineage4.1.1.1
|
None
|
ERR11489017
|
MDR-TB
|
lineage4.1.1.1
|
None
|
SRR6896343
|
MDR-TB
|
lineage4.1.1.1
|
None
|
ERR11488392
|
MDR-TB
|
lineage4.1.1.1
|
None
|
ERR11465514
|
MDR-TB
|
lineage4.1.1.1
|
None
|
ERR4020198
|
MDR-TB
|
lineage4.1.1.1
|
None
|
ERR4827858
|
MDR-TB
|
lineage2.2.1;lineage4.3.3
|
None
|
SRR1172215
|
MDR-TB
|
lineage4.1.1.1
|
None
|
ERR1034669
|
Pre-XDR-TB
|
lineage4.2.2.1
|
bg
|
SRR11662674
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13286083
|
MDR-TB
|
lineage4.1.1.1
|
None
|
ERR7362001
|
MDR-TB
|
lineage4.1.1.1
|
None
|
SRR16149165
|
Pre-XDR-TB
|
lineage4.2.2.1
|
None
|
ERR4813818
|
Pre-XDR-TB
|
lineage4.3.4.2
|
None
|
SRR3743200
|
Pre-XDR-TB
|
lineage4.4.1.1
|
None
|
SRR7341655
|
MDR-TB
|
lineage4.4.1.1
|
ro
|
ERR7362000
|
MDR-TB
|
lineage4.1.1.1
|
None
|
ERR4423754
|
MDR-TB
|
lineage4.1.1.1
|
None
|
ERR11488957
|
MDR-TB
|
lineage4.1.1.1
|
None
|
ERR7737814
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR9119934
|
MDR-TB
|
lineage4.1.1.1
|
None
|
SRR1167173
|
MDR-TB
|
lineage2.2.2;lineage4.1.1.1
|
None
|
SRR7341643
|
MDR-TB
|
lineage4.4.1.1
|
ro
|
SRR7341684
|
MDR-TB
|
lineage4.4.1.1
|
ro
|
SRR6896573
|
MDR-TB
|
lineage4.1.1.1
|
None
|
ERR551897
|
MDR-TB
|
lineage4.1.1.1
|
None
|
SRR28706630
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1165652
|
MDR-TB
|
lineage4.1.1.1
|
None
|
SAMN02403603
|
MDR-TB
|
lineage4.1.1.1
|
za
|
SAMN02403602
|
Pre-XDR-TB
|
lineage4.1.1.1
|
za
|
SAMN02403574
|
MDR-TB
|
lineage4.1.1.1
|
za
|
SRR1165681
|
MDR-TB
|
lineage4.1.1.1
|
None
|
ERR11488936
|
MDR-TB
|
lineage4.1.1.1
|
None
|
SRR7341654
|
Pre-XDR-TB
|
lineage4.4.1.1
|
ro
|
SRR3086369
|
Pre-XDR-TB
|
lineage4.1.1.1
|
None
|
SRR28351433
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR16149159
|
Pre-XDR-TB
|
lineage4.2.2.1
|
None
|
SRR12708377
|
HR-TB
|
lineage4.1.1.1
|
None
|
ERR10748095
|
Pre-XDR-TB
|
lineage4.1.1.1
|
None
|
ERR2199768
|
MDR-TB
|
lineage4.1.1.1
|
None
|
ERR11465454
|
HR-TB
|
lineage4.1.1.1
|
None
|
SRR29274197
|
MDR-TB
|
lineage4.4.1.1
|
None
|
SRR10315487
|
MDR-TB
|
lineage4.1.1.1
|
None
|
SRR1165310
|
MDR-TB
|
lineage4.1.1.1
|
None
|
SRR1172177
|
HR-TB
|
lineage4.1.1.1
|
None
|
ERR552273
|
Pre-XDR-TB
|
lineage4.1.1.1
|
sz
|
ERR11044740
|
MDR-TB
|
lineage4.2.2.1
|
None
|
SRR1165722
|
MDR-TB
|
lineage4.1.1.1
|
None
|
ERR10748105
|
Pre-XDR-TB
|
lineage4.1.1.1
|
None
|
SRR9971091
|
MDR-TB
|
lineage4.1.1.1
|
None
|
SRR16149135
|
Pre-XDR-TB
|
lineage4.2.2.1
|
None
|
ERR8699763
|
Other
|
lineage2.2.1.1;lineage4.1.1.1
|
None
|
ERR4407557
|
Pre-XDR-TB
|
lineage4.2.2.1
|
None
|
SRR9971252
|
MDR-TB
|
lineage4.1.1.1
|
None
|
SRR16149180
|
Pre-XDR-TB
|
lineage4.2.2.1
|
None
|
SRR16058681
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11081190
|
Pre-XDR-TB
|
lineage4.2.2.1
|
None
|
ERR4828297
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR16149164
|
Pre-XDR-TB
|
lineage4.2.2.1
|
None
|
SRR1167369
|
MDR-TB
|
lineage4.1.1.1
|
None
|
ERR553182
|
HR-TB
|
lineage4.1.1.1
|
sz
|
SRR1173312
|
MDR-TB
|
lineage4.1.1.1
|
None
|
SRR11349189
|
MDR-TB
|
lineage4.1.1.1
|
None
|
SRR26937007
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR16149116
|
Pre-XDR-TB
|
lineage4.2.2.1
|
None
|
ERR10748293
|
MDR-TB
|
lineage4.1.1.1
|
None
|
SRR29274253
|
Pre-XDR-TB
|
lineage4.2.2.1
|
None
|
ERR4813836
|
Pre-XDR-TB
|
lineage4.3.4.2
|
None
|
SAMN02403610
|
MDR-TB
|
lineage4.1.1.1
|
None
|
ERR10610347
|
Pre-XDR-TB
|
lineage4.1.1.1
|
None
|
SRR1169170
|
MDR-TB
|
lineage4.1.1.1
|
None
|
ERR5917993
|
Pre-XDR-TB
|
lineage4.1.1.1
|
za
|
ERR4797343
|
MDR-TB
|
lineage2.2.1
|
in
|
ERR9992849
|
Pre-XDR-TB
|
lineage4.1.1.1
|
None
|
SRR7341698
|
MDR-TB
|
lineage4.4.1.1
|
ro
|
SRR1167340
|
MDR-TB
|
lineage4.1.1.1
|
None
|
SRR7341682
|
Pre-XDR-TB
|
lineage4.4.1.1
|
ro
|
SRR24256138
|
MDR-TB
|
lineage4.2.1
|
None
|
SRR29017277
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1173638
|
MDR-TB
|
lineage4.1.1.1
|
None
|
ERR11488535
|
MDR-TB
|
lineage4.1.1.1
|
None
|
ERR4423753
|
RR-TB
|
lineage4.1.1.1
|
None
|
SRR3086371
|
MDR-TB
|
lineage4.1.1.1
|
None
|
ERR551166
|
Pre-XDR-TB
|
lineage4.1.1.1
|
sz
|
ERR5987384
|
MDR-TB
|
lineage4.1.1.1
|
None
|
SRR9971226
|
MDR-TB
|
lineage4.1.1.1
|
None
|
SRR10525338
|
MDR-TB
|
lineage4.4.1.1
|
None
|
ERR1036288
|
MDR-TB
|
lineage4.4.1.1
|
pt
|
SRR1165707
|
Pre-XDR-TB
|
lineage4.1.1.1
|
None
|
ERR4423727
|
MDR-TB
|
lineage4.1.1.1
|
None
|
SRR23938632
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR16149139
|
Pre-XDR-TB
|
lineage4.2.2.1
|
None
|
ERR4796448
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4020197
|
MDR-TB
|
lineage4.1.1.1
|
None
|
ERR4827860
|
MDR-TB
|
lineage2.2.1;lineage4.3.3
|
None
|
ERR10748149
|
Pre-XDR-TB
|
lineage4.1.1.1
|
None
|
ERR10610141
|
MDR-TB
|
lineage4.1.1.1
|
None
|
SRR3085300
|
MDR-TB
|
lineage4.1.1.1
|
None
|
SRR7341675
|
MDR-TB
|
lineage4.4.1.1
|
ro
|
SAMN02403499
|
MDR-TB
|
lineage4.1.1.1
|
za
|
ERR9119935
|
MDR-TB
|
lineage4.1.1.1
|
None
|
SRR1173246
|
MDR-TB
|
lineage4.1.1.1
|
None
|
SRR1167358
|
MDR-TB
|
lineage4.1.1.1
|
None
|
SRR1169196
|
MDR-TB
|
lineage4.1.1.1
|
None
|
SRR7341686
|
MDR-TB
|
lineage4.4.1.1
|
ro
|
SRR2101307
|
MDR-TB
|
lineage4.1.1.1
|
None
|
SRR16149187
|
Pre-XDR-TB
|
lineage4.2.2.1
|
None
|
ERR4831015
|
Pre-XDR-TB
|
lineage2.2.1
|
np
|
SRR1169283
|
Pre-XDR-TB
|
lineage4.1.1.1
|
None
|
ERR10748553
|
MDR-TB
|
lineage4.1.1.1
|
None
|
ERR11465700
|
MDR-TB
|
lineage4.1.1.1
|
None
|
SRR24255940
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR7341689
|
MDR-TB
|
lineage4.4.1.1
|
ro
|
ERR4423524
|
MDR-TB
|
lineage4.1.1.1
|
None
|
ERR11488938
|
MDR-TB
|
lineage4.1.1.1
|
None
|
ERR13266990
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR553002
|
MDR-TB
|
lineage4.1.1.1
|
sz
|