lineage | Count |
---|---|
lineage2.2.1.1 | 1 |
lineage2.2.1 | 103 |
lineage4.4.1.1 | 3 |
lineage4.2.2.1 | 2 |
lineage3 | 2 |
lineage4.8;lineage2.2.1 | 1 |
lineage4.1.3 | 5 |
1 | |
lineage4.8;lineage2 | 1 |
lineage4.3.4.2 | 1 |
lineage4.1.2.1;lineage2.2.1 | 1 |
lineage4.1.2.1 | 1 |
lineage4.8 | 6 |
lineage4 | 1 |
lineage4.6.1 | 2 |
lineage4.2.1 | 2 |
spoligotype | Count |
---|---|
None | 133 |
ID | Drug resistance | Lineage | Country iso2 | SRR21576567 | MDR-TB | lineage2.2.1.1 | None | SRR18714921 | MDR-TB | lineage2.2.1 | None | SRR21001884 | Pre-XDR-TB | lineage2.2.1 | None | SRR21001885 | Pre-XDR-TB | lineage2.2.1 | None | SRR19612378 | MDR-TB | lineage2.2.1 | None | SRR21658532 | Other | lineage4.4.1.1 | None | SRR22179522 | Pre-XDR-TB | lineage4.2.2.1 | None | ERR11080892 | MDR-TB | lineage3 | None | SRR22351877 | Pre-XDR-TB | lineage2.2.1 | None | ERR2677442 | Pre-XDR-TB | lineage4.2.2.1 | de | SAMN02628500 | Pre-XDR-TB | lineage2.2.1 | ir | SAMN02628502 | Pre-XDR-TB | lineage2.2.1 | ir | ERR11082026 | Pre-XDR-TB | lineage2.2.1 | None | SAMN02628499 | Pre-XDR-TB | lineage2.2.1 | ir | ERR2041704 | MDR-TB | lineage2.2.1 | rs | ERR2041685 | MDR-TB | lineage2.2.1 | None | SRR5152949 | HR-TB | lineage2.2.1 | None | ERR234566 | MDR-TB | lineage4.8;lineage2.2.1 | None | SAMN02628501 | Pre-XDR-TB | lineage2.2.1 | ir | SAMN02628498 | Pre-XDR-TB | lineage2.2.1 | ir | SRR5152958 | HR-TB | lineage2.2.1 | None | ERR228043 | MDR-TB | lineage2.2.1 | ru | ERR2510712 | MDR-TB | lineage2.2.1 | it | ERR2041691 | MDR-TB | lineage2.2.1 | rs | ERR2041716 | MDR-TB | lineage2.2.1 | None | SRR5153618 | MDR-TB | lineage2.2.1 | None | SRR5152963 | HR-TB | lineage2.2.1 | None | ERR2516243 | MDR-TB | lineage2.2.1 | be | SRR5153713 | Pre-XDR-TB | lineage2.2.1 | None | SAMN02231161 | Pre-XDR-TB | lineage4.1.3 | ml | ERR2041706 | MDR-TB | lineage2.2.1 | rs | ERR4828081 | MDR-TB | lineage2.2.1 | None | ERR2200148 | MDR-TB | lineage2.2.1 | rs | ERR4822297 | Pre-XDR-TB | lineage2.2.1 | de | ERR2041695 | MDR-TB | lineage2.2.1 | None | SRR5709871 | MDR-TB | lineage2.2.1 | th | SRR6785230 | HR-TB | None | ERR4828114 | MDR-TB | lineage2.2.1 | None | SRR6484938 | HR-TB | lineage2.2.1 | None | ERR4831097 | Pre-XDR-TB | lineage2.2.1 | None | SRR6832015 | MDR-TB | lineage2.2.1 | None | SRR6458443 | Pre-XDR-TB | lineage2.2.1 | None | SRR6484894 | HR-TB | lineage4.8;lineage2 | None | SRR6257043 | MDR-TB | lineage2.2.1 | None | SRR671721 | MDR-TB | lineage2.2.1 | cn | SRR6785297 | MDR-TB | lineage2.2.1 | None | SRR6832498 | Pre-XDR-TB | lineage4.3.4.2 | None | SRR6785371 | HR-TB | lineage2.2.1 | None | SRR1723776 | MDR-TB | lineage2.2.1 | cn | SRR6832824 | MDR-TB | lineage2.2.1 | None | ERR2041800 | MDR-TB | lineage2.2.1 | rs | SRR6824586 | MDR-TB | lineage2.2.1 | cn | SRR6824593 | Pre-XDR-TB | lineage2.2.1 | cn | SRR7652971 | MDR-TB | lineage2.2.1 | None | SRR998773 | Pre-XDR-TB | lineage4.1.3 | None | SRR998774 | Pre-XDR-TB | lineage4.1.3 | None | SRR7652977 | MDR-TB | lineage2.2.1 | None | ERR11043291 | Pre-XDR-TB | lineage2.2.1 | None | ERR137194 | HR-TB | lineage4.1.2.1;lineage2.2.1 | None | ERR11044220 | Pre-XDR-TB | lineage2.2.1 | None | ERR117456 | MDR-TB | lineage2.2.1 | ru | ERR133815 | HR-TB | lineage2.2.1 | ru | ERR133900 | Pre-XDR-TB | lineage2.2.1 | ru | ERR133888 | HR-TB | lineage2.2.1 | ru | ERR144542 | Pre-XDR-TB | lineage2.2.1 | ru | ERR137202 | Other | lineage4.1.2.1 | ru | ERR3794515 | MDR-TB | lineage2.2.1 | None | ERR3794504 | MDR-TB | lineage2.2.1 | None | ERR144591 | Pre-XDR-TB | lineage2.2.1 | ru | ERR4797780 | Pre-XDR-TB | lineage4.8 | in | ERR4276910 | Pre-XDR-TB | lineage2.2.1 | None | ERR4796609 | Pre-XDR-TB | lineage4.8 | in | ERR4796681 | Pre-XDR-TB | lineage4.8 | in | ERR4423711 | MDR-TB | lineage4.4.1.1 | None | ERR4797577 | MDR-TB | lineage4.8 | in | ERR4799283 | Pre-XDR-TB | lineage4.8 | in | ERR4798290 | Pre-XDR-TB | lineage3 | in | ERR4798515 | Pre-XDR-TB | lineage4.8 | in | ERR4810850 | MDR-TB | lineage2.2.1 | cn | ERR5865737 | MDR-TB | lineage2.2.1 | None | ERR4810865 | Pre-XDR-TB | lineage2.2.1 | cn | ERR4811000 | MDR-TB | lineage2.2.1 | cn | ERR4811323 | Pre-XDR-TB | lineage2.2.1 | cn | ERR5865941 | MDR-TB | lineage2.2.1 | None | ERR7737845 | MDR-TB | lineage2.2.1 | None | ERR5917664 | MDR-TB | lineage2.2.1 | by | ERR8665768 | Pre-XDR-TB | lineage2.2.1 | None | ERR8665523 | Pre-XDR-TB | lineage2.2.1 | None | ERR8665655 | Pre-XDR-TB | lineage2.2.1 | None | ERR8665656 | Pre-XDR-TB | lineage2.2.1 | None | ERR8665770 | Pre-XDR-TB | lineage2.2.1 | None | ERR8665696 | Pre-XDR-TB | lineage2.2.1 | None | ERR8665697 | Pre-XDR-TB | lineage2.2.1 | None | ERR8665720 | Pre-XDR-TB | lineage2.2.1 | None | ERR8665721 | Pre-XDR-TB | lineage2.2.1 | None | ERR8665833 | Pre-XDR-TB | lineage2.2.1 | None | ERR8665967 | Pre-XDR-TB | lineage2.2.1 | None | ERR9030268 | MDR-TB | lineage4 | None | ERR8774393 | MDR-TB | lineage4.4.1.1 | None | SRR1002689 | MDR-TB | lineage2.2.1 | None | ERR9119676 | MDR-TB | lineage2.2.1 | None | SRR10303281 | Pre-XDR-TB | lineage2.2.1 | None | SRR1049969 | Pre-XDR-TB | lineage4.1.3 | None | SRR10430358 | Pre-XDR-TB | lineage2.2.1 | None | SRR1049590 | MDR-TB | lineage4.6.1 | None | SRR1049591 | MDR-TB | lineage4.6.1 | None | SRR10397262 | Pre-XDR-TB | lineage2.2.1 | None | SRR1049970 | Pre-XDR-TB | lineage4.1.3 | None | SRR1173393 | Pre-XDR-TB | lineage2.2.1 | None | SRR1172711 | Pre-XDR-TB | lineage2.2.1 | None | SRR1173750 | Pre-XDR-TB | lineage2.2.1 | None | SRR1173446 | Pre-XDR-TB | lineage2.2.1 | None | SRR1173628 | Pre-XDR-TB | lineage2.2.1 | None | SRR1173675 | Pre-XDR-TB | lineage2.2.1 | None | SRR1173722 | Pre-XDR-TB | lineage2.2.1 | None | SRR1173792 | Pre-XDR-TB | lineage2.2.1 | None | SRR1173842 | Pre-XDR-TB | lineage2.2.1 | None | SRR1174307 | Pre-XDR-TB | lineage2.2.1 | None | SRR13232405 | Pre-XDR-TB | lineage2.2.1 | None | SRR13232593 | Pre-XDR-TB | lineage2.2.1 | None | SRR13232493 | Pre-XDR-TB | lineage2.2.1 | None | SRR13232492 | Pre-XDR-TB | lineage2.2.1 | None | SRR13232548 | Pre-XDR-TB | lineage2.2.1 | None | SRR13232629 | MDR-TB | lineage2.2.1 | None | SRR13232786 | Pre-XDR-TB | lineage2.2.1 | None | SRR13232674 | Pre-XDR-TB | lineage2.2.1 | None | SRR13232711 | Pre-XDR-TB | lineage2.2.1 | None | SRR13232714 | Pre-XDR-TB | lineage2.2.1 | None | SRR14782317 | Pre-XDR-TB | lineage4.2.1 | None | SRR14807588 | MDR-TB | lineage4.2.1 | None | SRR14807665 | Pre-XDR-TB | lineage2.2.1 | None | SRR15368720 | MDR-TB | lineage2.2.1 | None | SRR15368774 | MDR-TB | lineage2.2.1 | None |
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