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SRA data
Rv2428
- c.52_54delCTCinsTG
Drug resistance types
0 Sensitive
0 RR-TB
5 HR-TB
9 MDR-TB
2 Pre-XDR-TB
0 XDR-TB
13 Other
lineage Counts
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lineage
Count
lineage
Count
lineage2.1;lineage4.9
4
lineage2.1;lineage4.9;lineage6.3
3
La3;lineage2.1;lineage4.9
2
M.canetti;lineage2.1;lineage6.3
2
M.canetti;lineage2.1;lineage4.9
2
La3;lineage2.1;lineage6.3
1
M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3
1
lineage2.1;lineage4.1.1.1;lineage6.3
1
La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3
1
lineage4.9
1
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spoligotype Counts
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spoligotype
Count
spoligotype
Count
None
29
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Geographic prevalence
Country level data for this variant is available for 0 isolates.
+
−
Variant Proportion
Hover over a Country
0–0.1
0.1–0.2
0.2–0.3
0.3–0.4
0.4–0.5
0.5–0.6
0.6–0.8
0.8+
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Statisctical support
Not enough data to calculate support.
Samples
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ID
Drug resistance
Lineage
Country iso2
ID
Drug resistance
Lineage
Country iso2
ERR124642
MDR-TB
M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3
None
ERR124651
MDR-TB
La3;M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3
None
ERR126618
MDR-TB
La3;M.canetti;lineage2.1;lineage4.9;lineage6.3
None
ERR176793
Other
lineage4.1.1.1
None
ERR294248
MDR-TB
lineage2.1;lineage4.9
None
ERR4797054
Pre-XDR-TB
lineage2.1
None
ERR4798406
MDR-TB
La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3
None
ERR4810741
HR-TB
La3;lineage2.1;lineage6.3
None
ERR4811022
HR-TB
M.canetti;lineage2.1;lineage4.9
None
ERR4811075
Other
lineage2.1;lineage4.9;lineage6.3
None
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