Rv2535c - c.402T>C
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
85 Sensitive
1 RR-TB
6 HR-TB
42 MDR-TB
0 Pre-XDR-TB
2 XDR-TB
0 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.3.4.2.1 | 122 |
| 1 | |
| lineage1.1.2;lineage4.3.4.2.1 | 1 |
| lineage4.3.4.2.1;lineage4.6.1.1 | 1 |
| lineage4.3.4.2.1;lineage4.6.1.2 | 1 |
| M.canetti;lineage2.2 | 2 |
| La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | 1 |
| lineage4.1.1.1 | 6 |
| La1.7;M.canetti;lineage4.9 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 136 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR6358969 | MDR-TB | lineage4.3.4.2.1 | None | ERR6358991 | HR-TB | None | SRR27450377 | Sensitive | lineage4.3.4.2.1 | None | SRR27450164 | Sensitive | lineage4.3.4.2.1 | None | SRR21732458 | Sensitive | lineage4.3.4.2.1 | None | SRR29441129 | Sensitive | lineage4.3.4.2.1 | None | ERR6359042 | MDR-TB | lineage4.3.4.2.1 | None | SRR29440844 | Sensitive | lineage4.3.4.2.1 | None | SRR28868375 | Sensitive | lineage4.3.4.2.1 | None | SRR21732050 | Sensitive | lineage4.3.4.2.1 | None | SRR27450543 | Sensitive | lineage4.3.4.2.1 | None | SRR21690012 | Sensitive | lineage4.3.4.2.1 | None | ERR6358707 | MDR-TB | lineage4.3.4.2.1 | None | SRR29440680 | Sensitive | lineage4.3.4.2.1 | None | ERR6359110 | MDR-TB | lineage4.3.4.2.1 | None | ERR3132075 | MDR-TB | lineage4.3.4.2.1 | None | SRR27450539 | Sensitive | lineage4.3.4.2.1 | None | SRR17657949 | HR-TB | lineage1.1.2;lineage4.3.4.2.1 | None | SRR29441066 | Sensitive | lineage4.3.4.2.1 | None | SRR29440962 | Sensitive | lineage4.3.4.2.1 | None | SRR21732403 | Sensitive | lineage4.3.4.2.1 | None | ERR6358741 | MDR-TB | lineage4.3.4.2.1 | None | SRR29440965 | Sensitive | lineage4.3.4.2.1 | None | SRR27450363 | Sensitive | lineage4.3.4.2.1 | None | ERR6359080 | MDR-TB | lineage4.3.4.2.1 | None | SRR13180311 | Sensitive | lineage4.3.4.2.1 | None | ERR6358859 | MDR-TB | lineage4.3.4.2.1 | None | SRR29441078 | Sensitive | lineage4.3.4.2.1 | None | SRR21733280 | Sensitive | lineage4.3.4.2.1 | None | ERR3132272 | MDR-TB | lineage4.3.4.2.1 | None | SRR17657929 | MDR-TB | lineage4.3.4.2.1 | None | ERR040120 | MDR-TB | lineage4.3.4.2.1 | ug | ERR040142 | MDR-TB | lineage4.3.4.2.1 | ug | ERR1213850 | MDR-TB | lineage4.3.4.2.1 | rw | ERR2516670 | MDR-TB | lineage4.3.4.2.1 | nl | ERR6358993 | Sensitive | lineage4.3.4.2.1 | None | SRR21733299 | Sensitive | lineage4.3.4.2.1 | None | ERR6358942 | MDR-TB | lineage4.3.4.2.1 | None | ERR1213888 | MDR-TB | lineage4.3.4.2.1 | rw | ERR1213826 | MDR-TB | lineage4.3.4.2.1 | rw | ERR11068809 | MDR-TB | lineage4.3.4.2.1 | None | SRR21732281 | Sensitive | lineage4.3.4.2.1 | None | SRR21732375 | Sensitive | lineage4.3.4.2.1 | None | SRR21733356 | Sensitive | lineage4.3.4.2.1 | None | SRR21732212 | Sensitive | lineage4.3.4.2.1 | None | ERR6358936 | MDR-TB | lineage4.3.4.2.1 | None | ERR6359108 | Sensitive | lineage4.3.4.2.1 | None | ERR6358987 | MDR-TB | lineage4.3.4.2.1 | None | SRR21732455 | Sensitive | lineage4.3.4.2.1 | None | ERR4596920 | MDR-TB | lineage4.3.4.2.1 | None | ERR2446202 | Sensitive | lineage4.3.4.2.1 | nl | ERR3132275 | MDR-TB | lineage4.3.4.2.1 | None | ERR6359085 | Sensitive | lineage4.3.4.2.1;lineage4.6.1.1 | None | ERR3077951 | Sensitive | lineage4.3.4.2.1 | None | SRR21733256 | Sensitive | lineage4.3.4.2.1 | None | SRR17657942 | MDR-TB | lineage4.3.4.2.1 | None | ERR6358816 | MDR-TB | lineage4.3.4.2.1 | None | SRR29440788 | Sensitive | lineage4.3.4.2.1 | None | SRR21732851 | Sensitive | lineage4.3.4.2.1 | None | SRR28868702 | Sensitive | lineage4.3.4.2.1 | None | SRR29440587 | Sensitive | lineage4.3.4.2.1 | None | ERR6358747 | RR-TB | lineage4.3.4.2.1;lineage4.6.1.2 | None | SRR21732214 | Sensitive | lineage4.3.4.2.1 | None | SRR21733243 | Sensitive | lineage4.3.4.2.1 | None | ERR6359003 | MDR-TB | lineage4.3.4.2.1 | None | SRR27450378 | Sensitive | lineage4.3.4.2.1 | None | SRR28868497 | Sensitive | lineage4.3.4.2.1 | None | SRR21732138 | Sensitive | lineage4.3.4.2.1 | None | SRR21732215 | Sensitive | lineage4.3.4.2.1 | None | SRR21691036 | Sensitive | lineage4.3.4.2.1 | None | ERR6358921 | MDR-TB | lineage4.3.4.2.1 | None | ERR6358890 | MDR-TB | lineage4.3.4.2.1 | None | ERR6359099 | Sensitive | lineage4.3.4.2.1 | None | ERR11068678 | Sensitive | lineage4.3.4.2.1 | None | ERR7911670 | XDR-TB | M.canetti;lineage2.2 | None | ERR400516 | Sensitive | lineage4.3.4.2.1 | gb | ERR4831545 | XDR-TB | M.canetti;lineage2.2 | None | SRR21732128 | Sensitive | lineage4.3.4.2.1 | None | SRR17657940 | MDR-TB | lineage4.3.4.2.1 | None | SRR21732220 | Sensitive | lineage4.3.4.2.1 | None | ERR1213889 | MDR-TB | lineage4.3.4.2.1 | rw | ERR6359021 | MDR-TB | lineage4.3.4.2.1 | None | ERR3797017 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | ERR3132251 | HR-TB | lineage4.3.4.2.1 | None | ERR3132131 | MDR-TB | lineage4.3.4.2.1 | None | ERR3132132 | MDR-TB | lineage4.3.4.2.1 | None | SRR7068882 | Sensitive | lineage4.1.1.1 | None | SRR27450317 | Sensitive | lineage4.3.4.2.1 | None | ERR2446102 | Sensitive | lineage4.3.4.2.1 | nl | SRR7070343 | Sensitive | lineage4.1.1.1 | None | ERR3275603 | Sensitive | lineage4.3.4.2.1 | nl | ERR3276179 | Sensitive | lineage4.3.4.2.1 | nl | ERR3275219 | Sensitive | lineage4.3.4.2.1 | nl | ERR3275468 | Sensitive | lineage4.3.4.2.1 | nl | SRR29441065 | Sensitive | lineage4.3.4.2.1 | None | SRR21732575 | Sensitive | lineage4.3.4.2.1 | None | SRR29441056 | Sensitive | lineage4.3.4.2.1 | None | SRR17657965 | MDR-TB | lineage4.3.4.2.1 | None | ERR6359072 | MDR-TB | lineage4.3.4.2.1 | None | SRR29440791 | Sensitive | lineage4.3.4.2.1 | None | SRR27450538 | Sensitive | lineage4.3.4.2.1 | None | ERR2124097 | HR-TB | lineage4.3.4.2.1 | None | SRR29440681 | Sensitive | lineage4.3.4.2.1 | None | SRR29440625 | Sensitive | lineage4.3.4.2.1 | None | SRR21733290 | Sensitive | lineage4.3.4.2.1 | None | SRR29440687 | Sensitive | lineage4.3.4.2.1 | None | SRR7068955 | Sensitive | lineage4.1.1.1 | None | SRR22249564 | Sensitive | lineage4.3.4.2.1 | None | ERR4815308 | Sensitive | lineage4.1.1.1 | gb | ERR6358940 | MDR-TB | lineage4.3.4.2.1 | None | SRR21733196 | Sensitive | lineage4.3.4.2.1 | None | SRR17657963 | MDR-TB | lineage4.3.4.2.1 | None | ERR3132129 | MDR-TB | lineage4.3.4.2.1 | None | ERR6358844 | MDR-TB | lineage4.3.4.2.1 | None | ERR736835 | HR-TB | La1.7;M.canetti;lineage4.9 | None | ERR4816432 | Sensitive | lineage4.1.1.1 | gb | ERR4816490 | Sensitive | lineage4.1.1.1 | gb | ERR11775937 | MDR-TB | lineage4.3.4.2.1 | None | SRR21732553 | Sensitive | lineage4.3.4.2.1 | None | ERR2517384 | Sensitive | lineage4.3.4.2.1 | nl | ERR2517347 | Sensitive | lineage4.3.4.2.1 | nl | SRR21733202 | Sensitive | lineage4.3.4.2.1 | None | SRR21733307 | Sensitive | lineage4.3.4.2.1 | None | ERR6358781 | MDR-TB | lineage4.3.4.2.1 | None | SRR21690293 | Sensitive | lineage4.3.4.2.1 | None | ERR6358801 | MDR-TB | lineage4.3.4.2.1 | None | SRR27449977 | Sensitive | lineage4.3.4.2.1 | None | SRR21732899 | Sensitive | lineage4.3.4.2.1 | None | SRR21732127 | Sensitive | lineage4.3.4.2.1 | None | ERR6358811 | MDR-TB | lineage4.3.4.2.1 | None | SRR21732407 | Sensitive | lineage4.3.4.2.1 | None | SRR21732449 | Sensitive | lineage4.3.4.2.1 | None | ERR1193653 | Sensitive | lineage4.3.4.2.1 | ug | ERR2446440 | Sensitive | lineage4.3.4.2.1 | nl | SRR21732140 | Sensitive | lineage4.3.4.2.1 | None | SRR21732747 | Sensitive | lineage4.3.4.2.1 | None |
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