Rv3197A - c.-57T>G
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
1 Sensitive
1 RR-TB
2 HR-TB
117 MDR-TB
94 Pre-XDR-TB
1 XDR-TB
1 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage2.2.1 | 211 |
| lineage4.1.2.1 | 4 |
| lineage4.3.3 | 2 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 217 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR5865022 | MDR-TB | lineage2.2.1 | None | SRR13180213 | MDR-TB | lineage2.2.1 | None | SRR6458411 | Pre-XDR-TB | lineage2.2.1 | None | SRR13232427 | Pre-XDR-TB | lineage2.2.1 | None | ERR5866136 | MDR-TB | lineage2.2.1 | None | SRR23861764 | MDR-TB | lineage2.2.1 | None | SRR10397194 | MDR-TB | lineage2.2.1 | None | ERR8665559 | Pre-XDR-TB | lineage2.2.1 | None | SRR6458448 | Pre-XDR-TB | lineage2.2.1 | None | ERR8665730 | MDR-TB | lineage2.2.1 | None | ERR8665546 | Pre-XDR-TB | lineage2.2.1 | None | SRR29539355 | Pre-XDR-TB | lineage2.2.1 | None | ERR10762291 | MDR-TB | lineage2.2.1 | None | ERR13284079 | MDR-TB | lineage2.2.1 | None | ERR5866135 | MDR-TB | lineage2.2.1 | None | SRR13232765 | MDR-TB | lineage2.2.1 | None | ERR5865438 | MDR-TB | lineage2.2.1 | None | ERR8665589 | Other | lineage2.2.1 | None | ERR13284435 | MDR-TB | lineage2.2.1 | None | SRR29539009 | MDR-TB | lineage2.2.1 | None | ERR4132449 | MDR-TB | lineage2.2.1 | None | ERR13284015 | MDR-TB | lineage2.2.1 | None | SRR7516394 | MDR-TB | lineage2.2.1 | None | ERR13292551 | MDR-TB | lineage2.2.1 | None | SRR29539630 | MDR-TB | lineage2.2.1 | None | SRR29539134 | MDR-TB | lineage2.2.1 | None | ERR8665762 | Pre-XDR-TB | lineage2.2.1 | None | SRR13232780 | MDR-TB | lineage2.2.1 | None | ERR8665763 | Pre-XDR-TB | lineage2.2.1 | None | SRR28393811 | MDR-TB | lineage4.1.2.1 | None | ERR8665943 | Pre-XDR-TB | lineage2.2.1 | None | SRR18715051 | Pre-XDR-TB | lineage2.2.1 | None | ERR10762269 | MDR-TB | lineage2.2.1 | None | ERR5865033 | Pre-XDR-TB | lineage2.2.1 | None | ERR8665950 | Pre-XDR-TB | lineage2.2.1 | None | ERR8665826 | Pre-XDR-TB | lineage2.2.1 | None | ERR8665846 | Pre-XDR-TB | lineage2.2.1 | None | ERR7911390 | MDR-TB | lineage2.2.1 | us | ERR8665935 | Pre-XDR-TB | lineage2.2.1 | None | ERR8665951 | Pre-XDR-TB | lineage2.2.1 | None | ERR4831330 | Pre-XDR-TB | lineage2.2.1 | de | SRR16088195 | MDR-TB | lineage2.2.1 | None | SRR13232462 | MDR-TB | lineage2.2.1 | None | SRR7516314 | MDR-TB | lineage2.2.1 | None | SRR5152917 | MDR-TB | lineage2.2.1 | None | ERR5866350 | MDR-TB | lineage2.2.1 | None | SRR28045777 | Sensitive | lineage4.3.3 | None | ERR551890 | MDR-TB | lineage2.2.1 | None | ERR5864075 | MDR-TB | lineage2.2.1 | None | ERR5866342 | MDR-TB | lineage2.2.1 | None | ERR5866343 | MDR-TB | lineage2.2.1 | None | ERR8773596 | MDR-TB | lineage2.2.1 | None | SRR16370525 | MDR-TB | lineage2.2.1 | None | ERR550900 | MDR-TB | lineage2.2.1 | None | ERR5865035 | Pre-XDR-TB | lineage2.2.1 | None | ERR8665726 | Pre-XDR-TB | lineage2.2.1 | None | ERR2307560 | MDR-TB | lineage2.2.1 | None | SRR13232584 | Pre-XDR-TB | lineage2.2.1 | None | SRR18715078 | Pre-XDR-TB | lineage2.2.1 | None | ERR3639740 | Pre-XDR-TB | lineage2.2.1 | None | ERR5865026 | MDR-TB | lineage2.2.1 | None | ERR8665678 | Pre-XDR-TB | lineage2.2.1 | None | SRR13232585 | Pre-XDR-TB | lineage2.2.1 | None | ERR5865439 | MDR-TB | lineage2.2.1 | None | ERR552343 | MDR-TB | lineage2.2.1 | None | SRR28239721 | MDR-TB | lineage2.2.1 | None | ERR7910911 | MDR-TB | lineage2.2.1 | None | ERR5865034 | Pre-XDR-TB | lineage2.2.1 | None | ERR11082635 | Pre-XDR-TB | lineage2.2.1 | None | ERR5865025 | MDR-TB | lineage2.2.1 | None | SRR29539671 | MDR-TB | lineage2.2.1 | None | ERR11043804 | MDR-TB | lineage2.2.1 | None | ERR8665780 | MDR-TB | lineage2.2.1 | None | SRR29538902 | Pre-XDR-TB | lineage2.2.1 | None | SRR29539314 | Pre-XDR-TB | lineage2.2.1 | None | SRR28393269 | MDR-TB | lineage4.3.3 | None | SRR13232750 | MDR-TB | lineage2.2.1 | None | ERR13284162 | Pre-XDR-TB | lineage2.2.1 | None | ERR13285802 | Pre-XDR-TB | lineage2.2.1 | None | ERR5865021 | MDR-TB | lineage2.2.1 | None | ERR5865522 | MDR-TB | lineage2.2.1 | None | SRR23310817 | MDR-TB | lineage2.2.1 | None | ERR8665731 | MDR-TB | lineage2.2.1 | None | SRR6458456 | MDR-TB | lineage2.2.1 | None | ERR550843 | MDR-TB | lineage2.2.1 | None | SRR1166151 | MDR-TB | lineage2.2.1 | None | SRR13232736 | Pre-XDR-TB | lineage2.2.1 | None | SRR6257017 | Pre-XDR-TB | lineage2.2.1 | None | SRR13232576 | Pre-XDR-TB | lineage2.2.1 | None | ERR5866351 | MDR-TB | lineage2.2.1 | None | SRR1169005 | MDR-TB | lineage2.2.1 | None | ERR5864073 | RR-TB | lineage2.2.1 | None | ERR11044747 | Pre-XDR-TB | lineage2.2.1 | None | ERR13285829 | MDR-TB | lineage2.2.1 | None | ERR5864071 | MDR-TB | lineage2.2.1 | None | ERR4827760 | MDR-TB | lineage2.2.1 | None | SRR22757406 | MDR-TB | lineage2.2.1 | None | ERR4781457 | MDR-TB | lineage2.2.1 | None | ERR10762494 | Pre-XDR-TB | lineage2.2.1 | None | ERR5865523 | MDR-TB | lineage2.2.1 | None | ERR5865440 | MDR-TB | lineage2.2.1 | None | ERR5866352 | MDR-TB | lineage2.2.1 | None | SRR13232680 | MDR-TB | lineage2.2.1 | None | SRR13232525 | Pre-XDR-TB | lineage2.2.1 | None | SRR29539331 | Pre-XDR-TB | lineage2.2.1 | None | SRR10379940 | MDR-TB | lineage2.2.1 | None | SRR16088412 | Pre-XDR-TB | lineage2.2.1 | None | ERR8774375 | MDR-TB | lineage2.2.1 | None | ERR8665719 | Pre-XDR-TB | lineage2.2.1 | None | ERR8665976 | Pre-XDR-TB | lineage2.2.1 | None | ERR5865024 | MDR-TB | lineage2.2.1 | None | SRR1159977 | Pre-XDR-TB | lineage2.2.1 | None | ERR11798527 | MDR-TB | lineage2.2.1 | None | ERR5865036 | Pre-XDR-TB | lineage2.2.1 | None | SRR28498672 | MDR-TB | lineage2.2.1 | None | ERR8665851 | Pre-XDR-TB | lineage2.2.1 | None | ERR8665926 | Pre-XDR-TB | lineage2.2.1 | None | ERR8665934 | Pre-XDR-TB | lineage2.2.1 | None | ERR8665969 | Pre-XDR-TB | lineage2.2.1 | None | ERR8665977 | Pre-XDR-TB | lineage2.2.1 | None | ERR8665576 | Pre-XDR-TB | lineage2.2.1 | None | ERR7911398 | MDR-TB | lineage2.2.1 | us | ERR5866134 | MDR-TB | lineage2.2.1 | None | ERR5865547 | MDR-TB | lineage2.2.1 | None | ERR5865925 | MDR-TB | lineage2.2.1 | None | SRR23862159 | MDR-TB | lineage2.2.1 | None | SRR24256121 | MDR-TB | lineage2.2.1 | None | SRR13232507 | MDR-TB | lineage2.2.1 | None | SRR13232531 | MDR-TB | lineage2.2.1 | None | SRR13232587 | Pre-XDR-TB | lineage2.2.1 | None | SAMN02419561 | Pre-XDR-TB | lineage2.2.1 | by | ERR8773598 | MDR-TB | lineage2.2.1 | None | SRR1180937 | Pre-XDR-TB | lineage2.2.1 | None | ERR8665718 | Pre-XDR-TB | lineage2.2.1 | None | SRR29539011 | MDR-TB | lineage2.2.1 | None | SRR13232579 | Pre-XDR-TB | lineage2.2.1 | None | SRR13232716 | Pre-XDR-TB | lineage2.2.1 | None | ERR5866341 | MDR-TB | lineage2.2.1 | None | SRR10380050 | MDR-TB | lineage2.2.1 | None | ERR5865023 | MDR-TB | lineage2.2.1 | None | ERR5864072 | MDR-TB | lineage2.2.1 | None | SRR5153602 | MDR-TB | lineage2.2.1 | None | ERR4352121 | MDR-TB | lineage2.2.1 | None | SRR13232578 | Pre-XDR-TB | lineage2.2.1 | None | ERR8665629 | Pre-XDR-TB | lineage2.2.1 | None | ERR8665674 | Pre-XDR-TB | lineage2.2.1 | None | ERR8665677 | Pre-XDR-TB | lineage2.2.1 | None | ERR13284396 | MDR-TB | lineage2.2.1 | None | SRR14782546 | HR-TB | lineage2.2.1 | None | ERR8665588 | Pre-XDR-TB | lineage2.2.1 | None | SRR7516288 | MDR-TB | lineage2.2.1 | None | SRR29539410 | MDR-TB | lineage2.2.1 | None | ERR8665545 | Pre-XDR-TB | lineage2.2.1 | None | ERR8665587 | HR-TB | lineage2.2.1 | None | SRR29681409 | Pre-XDR-TB | lineage2.2.1 | None | SRR6357005 | Pre-XDR-TB | lineage2.2.1 | None | ERR8665779 | MDR-TB | lineage2.2.1 | None | SRR7516393 | MDR-TB | lineage2.2.1 | None | ERR8665630 | Pre-XDR-TB | lineage2.2.1 | None | SRR1184120 | Pre-XDR-TB | lineage2.2.1 | None | SRR13232589 | Pre-XDR-TB | lineage2.2.1 | None | SRR29539211 | MDR-TB | lineage2.2.1 | None | ERR5865027 | MDR-TB | lineage2.2.1 | None | ERR5864074 | MDR-TB | lineage2.2.1 | None | ERR8665531 | Pre-XDR-TB | lineage2.2.1 | None | ERR8665513 | Pre-XDR-TB | lineage2.2.1 | None | SRR29539062 | Pre-XDR-TB | lineage2.2.1 | None | SRR13232662 | Pre-XDR-TB | lineage2.2.1 | None | ERR8665532 | Pre-XDR-TB | lineage2.2.1 | None | ERR8665772 | Pre-XDR-TB | lineage2.2.1 | None | ERR13284652 | MDR-TB | lineage2.2.1 | None | ERR11081397 | MDR-TB | lineage2.2.1 | None | SRR13232678 | MDR-TB | lineage2.2.1 | None | ERR11798541 | MDR-TB | lineage2.2.1 | None | SRR13232523 | Pre-XDR-TB | lineage2.2.1 | None | SRR16088134 | MDR-TB | lineage2.2.1 | None | ERR5865020 | MDR-TB | lineage2.2.1 | None | ERR13284323 | MDR-TB | lineage2.2.1 | None | SRR16088090 | Pre-XDR-TB | lineage2.2.1 | None | ERR5865028 | MDR-TB | lineage2.2.1 | None | SRR1159700 | Pre-XDR-TB | lineage2.2.1 | None | ERR4797272 | Pre-XDR-TB | lineage2.2.1 | in | SRR29681427 | MDR-TB | lineage2.2.1 | None | SRR29539803 | MDR-TB | lineage2.2.1 | None | ERR5865546 | MDR-TB | lineage2.2.1 | None | ERR4799523 | XDR-TB | lineage2.2.1 | in | ERR8665807 | Pre-XDR-TB | lineage2.2.1 | None | SAMN02584609 | MDR-TB | lineage2.2.1 | md | SRR23862072 | MDR-TB | lineage2.2.1 | None | ERR8665514 | Pre-XDR-TB | lineage2.2.1 | None | SRR15723205 | MDR-TB | lineage2.2.1 | None | ERR3287591 | MDR-TB | lineage4.1.2.1 | None | SRR28393981 | MDR-TB | lineage4.1.2.1 | None | ERR12790850 | MDR-TB | lineage2.2.1 | None | SRR24709966 | MDR-TB | lineage2.2.1 | None | ERR8665974 | Pre-XDR-TB | lineage2.2.1 | None | ERR11081274 | MDR-TB | lineage2.2.1 | None | ERR4831246 | Pre-XDR-TB | lineage2.2.1 | None | ERR8665875 | Pre-XDR-TB | lineage2.2.1 | None | ERR7911041 | Pre-XDR-TB | lineage2.2.1 | md | ERR8665887 | Pre-XDR-TB | lineage2.2.1 | None | ERR7910921 | MDR-TB | lineage2.2.1 | md | ERR8665535 | Pre-XDR-TB | lineage2.2.1 | None | ERR8665618 | Pre-XDR-TB | lineage2.2.1 | None | ERR8665927 | Pre-XDR-TB | lineage2.2.1 | None | ERR8665942 | Pre-XDR-TB | lineage2.2.1 | None | ERR8665975 | Pre-XDR-TB | lineage2.2.1 | None | ERR8665997 | Pre-XDR-TB | lineage2.2.1 | None | ERR2516486 | MDR-TB | lineage4.1.2.1 | pe | SRR8237403 | MDR-TB | lineage2.2.1 | us | ERR8665673 | Pre-XDR-TB | lineage2.2.1 | None | ERR8665727 | Pre-XDR-TB | lineage2.2.1 | None | ERR8665968 | Pre-XDR-TB | lineage2.2.1 | None | ERR7362026 | Pre-XDR-TB | lineage2.2.1 | None | ERR13284482 | MDR-TB | lineage2.2.1 | None | ERR8665771 | Pre-XDR-TB | lineage2.2.1 | None | SRR13232658 | Pre-XDR-TB | lineage2.2.1 | None |
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