SRR14802157
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR28498549
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4872335
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13285825
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13285553
|
Sensitive
|
lineage2.2.1
|
None
|
ERR13285908
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR10762240
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR10762262
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR23311050
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR28498492
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4276905
|
MDR-TB
|
lineage2.2.1
|
None
|
SAMN02584583
|
MDR-TB
|
lineage2.2.1
|
md
|
SAMN02584646
|
HR-TB
|
lineage2.2.1
|
md
|
ERR4831258
|
XDR-TB
|
lineage2.2.1
|
de
|
SRR23310921
|
MDR-TB
|
lineage2.2.1
|
None
|
SAMN02584591
|
MDR-TB
|
lineage2.2.1
|
md
|
SRR3743401
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11044577
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13285764
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR14782568
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR11043509
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR28351205
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR7645960
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR14782623
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR23311037
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR23311006
|
MDR-TB
|
lineage2.2.1
|
None
|
SAMN02584596
|
Pre-XDR-TB
|
lineage2.2.1
|
md
|
SRR14801341
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR28498546
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR28498374
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR7645874
|
MDR-TB
|
lineage2.2.1;lineage4.2.1
|
None
|
SRR14807517
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14807540
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14801989
|
HR-TB
|
lineage2.2.1
|
None
|
SRR7645967
|
Sensitive
|
lineage2.2.1
|
None
|
SRR7755718
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14801981
|
MDR-TB
|
lineage2.2.1;lineage4.2.1
|
None
|
SRR14782547
|
HR-TB
|
lineage2.2.1
|
None
|
ERR11798604
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR7755663
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR11049501
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13285706
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14782303
|
HR-TB
|
lineage2.2.1
|
None
|
ERR7911227
|
MDR-TB
|
lineage2.2.1
|
md
|
ERR4276884
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14782365
|
HR-TB
|
lineage2.2.1
|
None
|
SRR14782343
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR10380033
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR14801747
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14801912
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1169100
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4829827
|
Pre-XDR-TB
|
lineage2.2.1
|
it
|
SRR5153925
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR7646051
|
Pre-XDR-TB
|
lineage2.2.1;lineage4.2
|
None
|
SRR14802140
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14807652
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR10380186
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4872315
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28498568
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR23311022
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14782083
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13292568
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR11798609
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR7645949
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR10762285
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SAMN02584590
|
MDR-TB
|
lineage2.2.1
|
md
|
SRR10380246
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR10380008
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4831254
|
MDR-TB
|
lineage2.2.1
|
de
|
ERR11044533
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR7645861
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR14807662
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR7755731
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR14801915
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR10380068
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR23310846
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR7755702
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR7755720
|
Pre-XDR-TB
|
lineage2.2.1;lineage4.2.1
|
None
|
SRR7755739
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR14781983
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11798631
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR10379918
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4830598
|
MDR-TB
|
lineage2.2.1
|
de
|
SRR3743399
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR14807622
|
HR-TB
|
lineage2.2.1
|
None
|
SRR23310825
|
HR-TB
|
lineage2.2.1
|
None
|
SRR21689845
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR28351200
|
HR-TB
|
lineage2.2.1
|
None
|
SRR14782325
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11798610
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SAMN02584644
|
MDR-TB
|
lineage2.2.1
|
md
|
SAMN02584623
|
MDR-TB
|
lineage2.2.1
|
md
|
SRR14782252
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR14801329
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14801721
|
HR-TB
|
lineage2.2.1
|
None
|
SRR14802111
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR7755691
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR7755763
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR7910912
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4798406
|
MDR-TB
|
La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3
|
None
|
ERR7910971
|
MDR-TB
|
lineage2.2.1
|
md
|
SRR14782041
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14782223
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR3743376
|
Pre-XDR-TB
|
lineage2.2.1;lineage4.2.1
|
None
|
SRR7646026
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR7755716
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR10762337
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR10762478
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR28351517
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR23310979
|
HR-TB
|
lineage2.2.1
|
None
|
ERR13285856
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR7910900
|
MDR-TB
|
lineage2.2.1
|
md
|
SRR14782311
|
Sensitive
|
lineage2.2.1
|
None
|
SRR28351636
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR23311070
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR6807709
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14807601
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR14781976
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR14807557
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR10380066
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR10380133
|
Sensitive
|
lineage2.2.1
|
None
|
ERR10762385
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR10380023
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR2516217
|
MDR-TB
|
lineage2.2.1
|
be
|
ERR4872331
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR28351514
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR7911054
|
MDR-TB
|
lineage2.2.1
|
md
|
ERR10762408
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR7755750
|
Pre-XDR-TB
|
lineage2.2.1;lineage4.2.1
|
None
|
SRR7645789
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR7645853
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR7645889
|
Pre-XDR-TB
|
lineage2.2.1;lineage4
|
None
|
SRR14782555
|
Other
|
lineage2.2.1
|
None
|
SRR3743400
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4872304
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4872351
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR7911028
|
MDR-TB
|
lineage2.2.1
|
md
|
SRR14782357
|
HR-TB
|
lineage2.2.1
|
None
|
ERR4872324
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28498724
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR23310941
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR23311038
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR7911058
|
Pre-XDR-TB
|
lineage2.2.1
|
md
|
SRR1169035
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14782738
|
HR-TB
|
lineage2.2.1
|
None
|
SRR14782645
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR28351510
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR10762318
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR6807681
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR23310831
|
HR-TB
|
lineage2.2.1
|
None
|
SRR13243563
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR23310892
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14802167
|
Pre-XDR-TB
|
lineage2.2.1;lineage4.2.1
|
None
|
SRR14801495
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR7646064
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14782553
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR14782449
|
HR-TB
|
lineage2.2.1
|
None
|
SRR10380187
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR28351637
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR7910966
|
MDR-TB
|
lineage2.2.1
|
md
|
ERR7911064
|
MDR-TB
|
lineage2.2.1
|
md
|
ERR13284952
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR28351194
|
HR-TB
|
lineage2.2.1
|
None
|
SRR28351199
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR10762438
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR28351624
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4872282
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR2600524
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR7910924
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR14782224
|
Pre-XDR-TB
|
lineage2.2.1;lineage4.2.1
|
None
|
SRR7755675
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14802077
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4872277
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR10762394
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR10762232
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR28351629
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR23311019
|
HR-TB
|
lineage2.2.1
|
None
|
SRR7755689
|
Pre-XDR-TB
|
lineage2.2.1;lineage4.2.1
|
None
|
SRR16088414
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14782765
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14782276
|
HR-TB
|
lineage2.2.1;lineage4.2.1
|
None
|
SRR23310956
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR10762227
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11798624
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11798602
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14807647
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11798614
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14807616
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14782772
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR7755673
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR11798632
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR5153841
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR10379927
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4872292
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR10380110
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13285863
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR10380042
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR7645912
|
MDR-TB
|
lineage2.2.1;lineage4.2.1
|
None
|
SRR14802017
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1169172
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11082578
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14801916
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR14801304
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11798608
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11798615
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11798619
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11798625
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4872262
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR3743488
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14782081
|
MDR-TB
|
lineage2.2.1;lineage4.2.1.1
|
None
|
ERR4872328
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR23311008
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14802035
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR6832293
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR5153926
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11798623
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR7755766
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR23310989
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR22048402
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR23310927
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR14782109
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR7755708
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR14782660
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR7910908
|
MDR-TB
|
lineage2.2.1
|
md
|
SRR28351618
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR28351191
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR28351511
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28498431
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR10379922
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR7755660
|
Sensitive
|
lineage2.2.1
|
None
|
SRR1166157
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR10762449
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR28351612
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14801490
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR7755652
|
Pre-XDR-TB
|
lineage2.2.1;lineage4.2.1
|
None
|
SRR14807469
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR7645929
|
RR-TB
|
lineage2.2.1
|
None
|
SRR6807723
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR14801959
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29341581
|
MDR-TB
|
lineage2.2.1
|
None
|
SAMN02584597
|
MDR-TB
|
lineage2.2.1
|
md
|
ERR7911250
|
MDR-TB
|
lineage2.2.1
|
md
|
SRR14782196
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR7645913
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1166227
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR23310978
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR10379974
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11798622
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR10762345
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR10379967
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14801594
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR10762261
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR7645956
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR7645887
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR10762443
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR10762257
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR3743409
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR14801819
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14802066
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR14782235
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14802258
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR6807715
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14782323
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR11798628
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1166093
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11044187
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13285917
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14801354
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14782352
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR7911078
|
MDR-TB
|
lineage2.2.1
|
md
|
SRR28351617
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR7911035
|
MDR-TB
|
lineage2.2.1
|
md
|
ERR10762293
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR10762367
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11798607
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11798626
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR7755683
|
Pre-XDR-TB
|
lineage2.2.1;lineage4.2.1
|
None
|
ERR13285723
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14802196
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR11798605
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11043975
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR1166302
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR23310847
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13285923
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11243604
|
Sensitive
|
lineage2.2.1
|
None
|
SRR1168974
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR28351638
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28498567
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR28351602
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR28498556
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR28498685
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13276129
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13276137
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13285386
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR10380222
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4872320
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR23310968
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14782562
|
HR-TB
|
lineage2.2.1
|
None
|
SRR14801496
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14801944
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14802046
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR14807550
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR23310855
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR7646045
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR6807739
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR3743489
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR10762368
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR5153834
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR11798606
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR7645951
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR403300
|
HR-TB
|
lineage2.2.1;lineage4
|
None
|
ERR11044415
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR11798635
|
HR-TB
|
lineage2.2.1;lineage4.8
|
None
|
ERR11798613
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11798627
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1169182
|
HR-TB
|
lineage2.2.1
|
None
|
ERR7911025
|
MDR-TB
|
lineage2.2.1
|
md
|
ERR10762296
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR14781979
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR7911032
|
MDR-TB
|
lineage2.2.1
|
md
|
SRR14807574
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR5153923
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14801606
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR7645868
|
HR-TB
|
lineage2.2.1
|
None
|
SRR14801586
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR7755705
|
MDR-TB
|
lineage2.2.1;lineage4.2.1
|
None
|
SRR5153919
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR8649110
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR10380123
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR2510707
|
MDR-TB
|
lineage2.2.1
|
it
|
SRR10380020
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR10380201
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR10762486
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR2600557
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR7910920
|
MDR-TB
|
lineage2.2.1
|
md
|
SRR23310838
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR14781888
|
Sensitive
|
lineage2.2.1
|
None
|
SRR6807710
|
MDR-TB
|
lineage2.2.1;lineage4
|
None
|
SRR14802208
|
HR-TB
|
lineage2.2.1
|
None
|
SRR21689899
|
Sensitive
|
lineage2.2.1
|
None
|
SRR7755744
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR14782510
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4831237
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13285858
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13285794
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR7911246
|
MDR-TB
|
lineage2.2.1
|
md
|
SRR29358142
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR7911036
|
MDR-TB
|
lineage2.2.1
|
md
|
SRR14801973
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR7755696
|
MDR-TB
|
lineage2.2.1;lineage4.2.1.1
|
None
|
SRR23310870
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR23310957
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR10380178
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR2864261
|
HR-TB
|
lineage2.2.1
|
None
|
SRR14807581
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR6831769
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR21690157
|
Sensitive
|
lineage2.2.1
|
None
|
SRR7755704
|
Pre-XDR-TB
|
lineage2.2.1;lineage4.2.1
|
None
|
SRR23310837
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR23311053
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11798630
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4872333
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14801421
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14801597
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR10379895
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR10379882
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR7911261
|
MDR-TB
|
lineage2.2.1
|
md
|
SRR6807724
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14807471
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14802118
|
HR-TB
|
lineage2.2.1
|
None
|
SRR14807602
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11798617
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR7910945
|
MDR-TB
|
lineage2.2.1
|
md
|
SRR28351632
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28498519
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR10762319
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13292544
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13285777
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR7645886
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14782486
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1166341
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1169159
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR14801663
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4872342
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4829687
|
HR-TB
|
lineage2.2.1
|
it
|
SRR6807753
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR10762268
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR23311077
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR7646028
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1166303
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR23310868
|
XDR-TB
|
lineage2.2.1;lineage4.2.1
|
None
|
SRR14782826
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR14801382
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14802092
|
Pre-XDR-TB
|
lineage2.2.1;lineage4.2.1
|
None
|
SRR3743433
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR14802032
|
HR-TB
|
lineage2.2.1
|
None
|
SRR14807455
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13285714
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR10762325
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR28498628
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR11798611
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR7910938
|
MDR-TB
|
lineage2.2.1
|
md
|
ERR7911081
|
MDR-TB
|
lineage2.2.1
|
md
|
ERR10762292
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11798620
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR6511610
|
HR-TB
|
lineage2.2.1
|
None
|
SRR14781850
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14802011
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR14802042
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1169052
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR7910958
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14807563
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR23310959
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14802033
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14807468
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR11798603
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR7755647
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4276891
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14782298
|
HR-TB
|
lineage2.2.1
|
None
|
SRR14782461
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR14807654
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR7910963
|
MDR-TB
|
lineage2.2.1
|
md
|
ERR7910904
|
MDR-TB
|
lineage2.2.1
|
md
|
ERR7911082
|
MDR-TB
|
lineage2.2.1
|
md
|
SRR10380096
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR10379931
|
MDR-TB
|
lineage2.2.1;lineage4.2.1
|
None
|
SRR14802122
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR7911093
|
MDR-TB
|
lineage2.2.1
|
md
|
SRR14782361
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR10762354
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14781891
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14782214
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14807663
|
MDR-TB
|
lineage2.2.1;lineage4.2.1.1
|
None
|
SRR14807624
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4872305
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR14782285
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR2600496
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4872268
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4872354
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR14801940
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR3743404
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR11798612
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR28351300
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR28351372
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28498695
|
HR-TB
|
lineage2.2.1
|
None
|
SRR5153816
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR28351213
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR28498681
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR28498650
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR10380184
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4872334
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR7910932
|
MDR-TB
|
lineage2.2.1;lineage4
|
md
|
SRR5153853
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR7645840
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR10762306
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4828817
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR6807685
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11082741
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR28498678
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR23311051
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR23311025
|
HR-TB
|
lineage2.2.1
|
None
|
ERR4830092
|
MDR-TB
|
lineage2.2.1;lineage4.3.3
|
None
|
SRR14782174
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14802260
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR14807593
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR14807681
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14782265
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR14782475
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR14782507
|
XDR-TB
|
lineage2.2.1;lineage4.2.1
|
None
|
SRR14801975
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR10380209
|
MDR-TB
|
lineage2.2.1;lineage4.3.3
|
None
|
SRR23311005
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR7645831
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11044205
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4872317
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR7646001
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR11044004
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR7911042
|
MDR-TB
|
lineage2.2.1
|
md
|
ERR11798618
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR10762270
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR23311027
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR14781955
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28351195
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR28498590
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR28351219
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28498664
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR28351190
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11050029
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4829122
|
Pre-XDR-TB
|
lineage2.2.1
|
it
|
SRR14782195
|
MDR-TB
|
lineage2.2.1;lineage4.2.1
|
None
|
SRR14801596
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14802241
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR14802266
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR7755738
|
Pre-XDR-TB
|
lineage2.2.1;lineage4.2.1
|
None
|
ERR11798616
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR10762472
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14802036
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14807561
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR28351661
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13285798
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13285867
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29126872
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR10762247
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR10762481
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR10762482
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14801947
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11067565
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14782767
|
HR-TB
|
lineage2.2.1
|
None
|
SRR14802019
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR23310967
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR28351608
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR28498578
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13285747
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14807539
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR7910897
|
MDR-TB
|
lineage2.2.1
|
md
|
ERR4830583
|
MDR-TB
|
lineage2.2.1
|
tm
|
ERR10762412
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR1353082
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR28351239
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR10762236
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR10762464
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28498651
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR5153852
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR28351246
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29126363
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29358129
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29358138
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1168994
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11798621
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4872271
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR10762361
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR1353083
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4829860
|
Pre-XDR-TB
|
lineage2.2.1
|
it
|
SRR14782421
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14801351
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14801878
|
HR-TB
|
lineage2.2.1
|
None
|
SRR14801996
|
HR-TB
|
lineage2.2.1
|
None
|
SRR6807706
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR28351655
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29539343
|
Sensitive
|
lineage2.2.1
|
None
|
ERR13285702
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR7645946
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR7755737
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14801941
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR14801987
|
HR-TB
|
lineage2.2.1
|
None
|
SRR14802080
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14802131
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14782606
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14801525
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR2600556
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11081169
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4829037
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR28351251
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR10762489
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR10380247
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1166087
|
HR-TB
|
lineage2.2.1
|
None
|
SRR28351382
|
MDR-TB
|
lineage2.2.1;lineage4.2.1
|
None
|
SRR28351198
|
HR-TB
|
lineage2.2.1
|
None
|
SRR23311009
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR6807705
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|