lineage | Count |
---|---|
lineage2.2.1.2 | 2 |
lineage4.6.1.2 | 2 |
lineage3 | 14 |
lineage1.1.3.1 | 9 |
lineage1.2.2.2 | 8 |
lineage2.2.1 | 67 |
lineage4.3.2.1 | 4 |
lineage4.1.2.1 | 11 |
lineage4.2.1.1 | 7 |
lineage4.3.3 | 12 |
lineage4.2 | 3 |
lineage4 | 2 |
lineage4.4.1.1 | 3 |
lineage3.1.2.1 | 1 |
lineage4.8 | 26 |
lineage3;lineage4.3.4.2 | 1 |
lineage4.2.1 | 4 |
lineage4.3.4.1 | 2 |
lineage1.1.2 | 4 |
lineage4.2.2.2 | 1 |
lineage2.2.1.1 | 2 |
lineage4.9 | 7 |
lineage4.1.2.1;lineage4.3.4.2.1 | 1 |
lineage2.2.1;lineage4.1.1.3 | 1 |
lineage2.2.1;lineage3;lineage4 | 1 |
lineage4.1.2.1;lineage4.8 | 1 |
lineage3;lineage4.8 | 1 |
lineage2.2.2 | 5 |
lineage4.2.2.1 | 3 |
lineage4.7 | 2 |
lineage1.1.3.1;lineage2.2.1 | 1 |
lineage4.6.1.1 | 1 |
lineage1.1.3 | 1 |
lineage4.3.4.2 | 3 |
lineage2.2.1;lineage4.3.3 | 1 |
lineage2.2.1;lineage3 | 1 |
lineage4.5 | 1 |
lineage4.3.4.2.1 | 1 |
lineage2.2.1;lineage4.8 | 1 |
lineage3.1.2 | 2 |
lineage2.2.1;lineage4.2.1 | 1 |
lineage4.8.1 | 1 |
lineage4.4.1.1.1 | 1 |
lineage2.2.1;lineage4 | 1 |
spoligotype | Count |
---|---|
None | 224 |
ID | Drug resistance | Lineage | Country iso2 |
---|---|---|---|
SRR25827806 | Pre-XDR-TB | lineage2.2.1.2 | None |
ERR11082200 | MDR-TB | lineage4.6.1.2 | None |
ERR13278943 | MDR-TB | lineage3 | None |
SRR29017673 | MDR-TB | lineage1.1.3.1 | None |
SRR29017696 | MDR-TB | lineage1.2.2.2 | None |
SRR29231051 | Sensitive | lineage3 | None |
SRR24710284 | Pre-XDR-TB | lineage2.2.1 | None |
ERR10112841 | Pre-XDR-TB | lineage4.3.2.1 | None |
ERR11044573 | Sensitive | lineage1.2.2.2 | None |
ERR4831338 | Sensitive | lineage4.1.2.1 | de |
SRR10379898 | Pre-XDR-TB | lineage2.2.1 | None |
SRR14782795 | Other | lineage4.2.1.1 | None |
ERR4800607 | Other | lineage2.2.1 | None |
SRR14801909 | Sensitive | lineage4.2.1.1 | None |
ERR11081818 | Sensitive | lineage4.1.2.1 | None |
SRR27107273 | Pre-XDR-TB | lineage4.3.3 | None |
SRR14801971 | Sensitive | lineage2.2.1 | None |
SRR14802164 | MDR-TB | lineage2.2.1 | None |
ERR4822330 | MDR-TB | lineage4.2 | de |
SRR29017548 | MDR-TB | lineage4 | None |
ERR4797122 | Sensitive | lineage1.2.2.2 | None |
SRR29017168 | MDR-TB | lineage3 | None |
SRR29016832 | MDR-TB | lineage3 | None |
SRR29093125 | Sensitive | lineage4.4.1.1 | None |
SRR29017627 | HR-TB | lineage3.1.2.1 | None |
ERR10465754 | Sensitive | lineage4.8 | None |
SRR29093423 | Pre-XDR-TB | lineage2.2.1 | None |
SRR16087908 | MDR-TB | lineage2.2.1 | None |
SRR29016869 | MDR-TB | lineage3;lineage4.3.4.2 | None |
SRR10380195 | Sensitive | lineage4.1.2.1 | None |
ERR4831391 | Sensitive | lineage1.2.2.2 | de |
ERR11798667 | MDR-TB | lineage4.2.1 | None |
SRR18714796 | Sensitive | lineage4.1.2.1 | None |
ERR4831183 | Sensitive | lineage4.8 | de |
SRR14801597 | Pre-XDR-TB | lineage2.2.1 | None |
SRR14782734 | Sensitive | lineage4.8 | None |
SRR14782810 | HR-TB | lineage4.3.3 | None |
SRR14782808 | Sensitive | lineage4.3.3 | None |
SRR14782803 | Sensitive | lineage2.2.1 | None |
ERR4800599 | XDR-TB | lineage2.2.1 | in |
ERR11044799 | Sensitive | lineage4.1.2.1 | None |
ERR11465734 | Sensitive | lineage4.3.4.1 | None |
ERR4799313 | HR-TB | lineage4.3.3 | in |
ERR4800652 | Sensitive | lineage1.1.2 | None |
SRR29017709 | Pre-XDR-TB | lineage1.1.3.1 | None |
ERR4830970 | Pre-XDR-TB | lineage4.2.2.2 | np |
SRR29017239 | MDR-TB | lineage1.1.3.1 | None |
ERR11465214 | Sensitive | lineage4.8 | None |
SRR14802146 | HR-TB | lineage2.2.1 | None |
ERR11466567 | Sensitive | lineage4.3.2.1 | None |
ERR11082142 | Pre-XDR-TB | lineage4.3.3 | None |
ERR4831124 | Sensitive | lineage4.4.1.1 | de |
ERR4827745 | HR-TB | lineage2.2.1 | None |
SRR29017148 | MDR-TB | lineage4.8 | None |
SRR29017648 | MDR-TB | lineage4 | None |
SRR25827339 | Sensitive | lineage2.2.1.1 | None |
SRR29017432 | HR-TB | lineage1.1.3.1 | None |
SRR29016861 | MDR-TB | lineage1.1.3.1 | None |
SRR29231166 | Sensitive | lineage3 | None |
SRR10430372 | MDR-TB | lineage2.2.1 | None |
SRR29017454 | Pre-XDR-TB | lineage4.8 | None |
SRR14802133 | MDR-TB | lineage2.2.1 | None |
SRR29017238 | MDR-TB | lineage1.2.2.2 | None |
ERR5979663 | Other | lineage4.9 | None |
ERR5979565 | Sensitive | lineage4.9 | None |
ERR5979648 | Other | lineage4.9 | None |
ERR5979682 | Other | lineage4.9 | None |
SRR14807614 | Sensitive | lineage2.2.1 | None |
SRR14801842 | Other | lineage4.2.1.1 | None |
SRR14801898 | Sensitive | lineage2.2.1 | None |
SRR14802015 | Pre-XDR-TB | lineage2.2.1 | None |
SRR14802057 | Sensitive | lineage4.3.4.1 | None |
ERR11775073 | RR-TB | lineage2.2.1 | None |
SRR24709966 | MDR-TB | lineage2.2.1 | None |
ERR11773740 | Pre-XDR-TB | lineage4.3.3 | None |
SRR14782049 | Sensitive | lineage4.1.2.1 | None |
SRR14782828 | MDR-TB | lineage2.2.1 | None |
ERR4276898 | MDR-TB | lineage4.2 | None |
SRR29017665 | MDR-TB | lineage2.2.1 | None |
SRR29016839 | MDR-TB | lineage1.1.2 | None |
ERR3323728 | Sensitive | lineage4.1.2.1 | None |
SRR14782052 | Sensitive | lineage4.8 | None |
ERR4827558 | MDR-TB | lineage2.2.1 | None |
ERR11465174 | Sensitive | lineage4.1.2.1;lineage4.3.4.2.1 | None |
ERR4800583 | Pre-XDR-TB | lineage2.2.1;lineage4.1.1.3 | None |
SRR14802262 | MDR-TB | lineage2.2.1 | None |
SRR23310923 | HR-TB | lineage2.2.1 | None |
SRR29017078 | Pre-XDR-TB | lineage3 | None |
SRR29230754 | Sensitive | lineage1.1.2 | None |
SRR10303354 | Pre-XDR-TB | lineage2.2.1 | None |
SRR25827749 | XDR-TB | lineage2.2.1;lineage3;lineage4 | None |
SRR14807491 | Other | lineage4.1.2.1;lineage4.8 | None |
SRR14807642 | Pre-XDR-TB | lineage2.2.1 | None |
SRR14801591 | MDR-TB | lineage2.2.1 | None |
SRR10303338 | HR-TB | lineage2.2.1 | None |
ERR4800598 | Pre-XDR-TB | lineage2.2.1 | in |
SRR14801919 | Sensitive | lineage4.2.1.1 | None |
SRR25827506 | MDR-TB | lineage3;lineage4.8 | None |
SRR14801432 | MDR-TB | lineage2.2.1 | None |
ERR10762427 | MDR-TB | lineage4.2.1 | None |
ERR4827862 | Sensitive | lineage4.3.3 | None |
ERR13284240 | MDR-TB | lineage4.6.1.2 | None |
SRR29017037 | MDR-TB | lineage4.8 | None |
SRR29017573 | RR-TB | lineage3 | None |
SRR29093241 | Pre-XDR-TB | lineage2.2.2 | None |
ERR13284094 | Pre-XDR-TB | lineage4.3.3 | None |
SRR29093220 | Sensitive | lineage2.2.1.1 | None |
ERR11083119 | Sensitive | lineage4.2.2.1 | None |
SRR29093980 | Pre-XDR-TB | lineage2.2.2 | None |
SRR29017174 | MDR-TB | lineage2.2.2 | None |
SRR14807622 | HR-TB | lineage2.2.1 | None |
ERR11798589 | MDR-TB | lineage2.2.1 | None |
SRR29093969 | Pre-XDR-TB | lineage4.7 | None |
SRR14802088 | MDR-TB | lineage2.2.1 | None |
SRR14807473 | MDR-TB | lineage2.2.1 | None |
SRR25827744 | Pre-XDR-TB | lineage1.1.3.1;lineage2.2.1 | None |
SRR25827881 | MDR-TB | lineage2.2.1 | None |
ERR4827809 | HR-TB | lineage2.2.1 | None |
ERR11775865 | HR-TB | lineage4.6.1.1 | None |
SRR14782171 | Sensitive | lineage2.2.1 | None |
SRR14782736 | Sensitive | lineage4.8 | None |
SRR10315527 | Sensitive | lineage2.2.1 | None |
ERR11043486 | Sensitive | lineage3 | None |
SRR29017704 | MDR-TB | lineage1.1.3 | None |
ERR13284270 | Pre-XDR-TB | lineage2.2.1 | None |
SRR29017402 | MDR-TB | lineage2.2.1 | None |
SRR29017009 | MDR-TB | lineage2.2.2 | None |
SRR29093467 | Sensitive | lineage4.3.2.1 | None |
SRR29093888 | Pre-XDR-TB | lineage2.2.2 | None |
ERR11082420 | MDR-TB | lineage3 | None |
SRR29017682 | MDR-TB | lineage4.3.4.2 | None |
ERR11081510 | Pre-XDR-TB | lineage2.2.1 | None |
SRR29017348 | MDR-TB | lineage4.1.2.1 | None |
SRR29017422 | Pre-XDR-TB | lineage2.2.1 | None |
SRR29017404 | MDR-TB | lineage4.3.4.2 | None |
SRR13232774 | Pre-XDR-TB | lineage4.3.3 | None |
SRR29016892 | HR-TB | lineage1.1.3.1 | None |
SRR29016814 | MDR-TB | lineage2.2.1.2 | None |
SRR13232759 | XDR-TB | lineage2.2.1;lineage4.3.3 | None |
SRR29017040 | MDR-TB | lineage1.1.3.1 | None |
SRR29017394 | MDR-TB | lineage4.8 | None |
ERR5979673 | Other | lineage4.9 | None |
ERR5979764 | Sensitive | lineage4.9 | None |
ERR5979775 | Sensitive | lineage4.9 | None |
ERR11082965 | Sensitive | lineage4.8 | None |
ERR3470636 | Sensitive | lineage3 | None |
ERR4827770 | Sensitive | lineage2.2.1;lineage3 | None |
ERR11044177 | Sensitive | lineage4.5 | None |
ERR11775043 | RR-TB | lineage4.3.4.2.1 | None |
ERR11775349 | Sensitive | lineage4.3.2.1 | None |
SRR10303320 | MDR-TB | lineage2.2.1 | None |
ERR4827549 | MDR-TB | lineage2.2.1 | None |
ERR11069015 | Sensitive | lineage4.7 | None |
SRR29017011 | MDR-TB | lineage4.8 | None |
ERR11044667 | Sensitive | lineage4.8 | None |
ERR3470611 | Sensitive | lineage4.4.1.1 | None |
SRR23310824 | MDR-TB | lineage2.2.1 | None |
ERR10680099 | MDR-TB | lineage4.8 | None |
ERR4827620 | HR-TB | lineage2.2.1 | None |
ERR4827726 | Sensitive | lineage4.1.2.1 | None |
SRR14782033 | Sensitive | lineage2.2.1;lineage4.8 | None |
SRR14802087 | MDR-TB | lineage2.2.1 | None |
SRR14782533 | Sensitive | lineage4.2.1.1 | None |
SRR14802021 | MDR-TB | lineage2.2.1 | None |
ERR11465317 | Sensitive | lineage4.1.2.1 | None |
ERR4827725 | Sensitive | lineage2.2.1 | None |
SRR14781841 | Sensitive | lineage4.8 | None |
SRR25827485 | MDR-TB | lineage1.1.2 | None |
SRR10379890 | MDR-TB | lineage4.2.1 | None |
SRR10430401 | Pre-XDR-TB | lineage2.2.1 | None |
SRR10380020 | Pre-XDR-TB | lineage2.2.1 | None |
SRR10430391 | HR-TB | lineage2.2.1 | None |
SRR23311061 | MDR-TB | lineage2.2.1 | None |
ERR4827693 | Sensitive | lineage4.8 | None |
ERR13267723 | Sensitive | lineage3 | None |
SRR29017602 | MDR-TB | lineage1.2.2.2 | None |
SRR29017091 | MDR-TB | lineage4.3.4.2 | None |
ERR10112848 | XDR-TB | lineage4.8 | None |
ERR4827597 | MDR-TB | lineage4.2.1 | None |
ERR13276290 | MDR-TB | lineage4.2 | None |
SRR14782462 | Sensitive | lineage2.2.1 | None |
ERR11043880 | Sensitive | lineage3 | None |
ERR11082721 | Sensitive | lineage4.8 | None |
SRR29017217 | MDR-TB | lineage3 | None |
SRR14801533 | Sensitive | lineage4.8 | None |
SRR14802119 | MDR-TB | lineage2.2.1 | None |
SRR29017093 | MDR-TB | lineage4.8 | None |
ERR6397158 | Sensitive | lineage3 | None |
SRR29230716 | Sensitive | lineage3.1.2 | None |
ERR13284292 | MDR-TB | lineage4.2.2.1 | None |
SRR29274004 | MDR-TB | lineage4.8 | None |
SRR29017675 | HR-TB | lineage1.1.3.1 | None |
ERR13276302 | Pre-XDR-TB | lineage2.2.1 | None |
SRR14801959 | MDR-TB | lineage2.2.1 | None |
ERR3794503 | Pre-XDR-TB | lineage2.2.1 | None |
SRR29093972 | Sensitive | lineage2.2.1 | None |
SRR29231467 | Sensitive | lineage3.1.2 | None |
SRR29016771 | Pre-XDR-TB | lineage2.2.1 | None |
SRR17406747 | HR-TB | lineage1.2.2.2 | None |
SRR14802053 | Pre-XDR-TB | lineage2.2.1 | None |
ERR2677445 | Pre-XDR-TB | lineage2.2.1 | de |
SRR13232501 | Pre-XDR-TB | lineage4.3.3 | None |
SRR29017005 | MDR-TB | lineage4.8 | None |
ERR4831181 | MDR-TB | lineage2.2.1 | de |
ERR4800704 | Other | lineage4.8 | None |
SRR29017097 | MDR-TB | lineage1.1.3.1 | None |
SRR14782745 | Sensitive | lineage4.8 | None |
SRR29017691 | MDR-TB | lineage1.2.2.2 | None |
ERR11082672 | Pre-XDR-TB | lineage2.2.1 | None |
ERR4830990 | Pre-XDR-TB | lineage2.2.1 | np |
ERR3794362 | MDR-TB | lineage2.2.1;lineage4.2.1 | None |
ERR11044417 | Sensitive | lineage4.1.2.1 | None |
SRR23311034 | Sensitive | lineage4.8 | None |
ERR11775804 | Sensitive | lineage4.8.1 | None |
ERR11775514 | Sensitive | lineage4.4.1.1.1 | None |
SRR14782026 | Other | lineage4.2.1.1 | None |
ERR11465071 | Sensitive | lineage2.2.1;lineage4 | None |
ERR4813753 | Sensitive | lineage4.3.3 | None |
SRR14802151 | MDR-TB | lineage2.2.1 | None |
SRR14802264 | HR-TB | lineage4.2.1.1 | None |
SRR14782019 | Other | lineage4.8 | None |
ERR11069066 | MDR-TB | lineage4.2.2.1 | None |
ERR13284973 | Pre-XDR-TB | lineage2.2.1 | None |
ERR4827851 | HR-TB | lineage4.3.3 | None |