Rv3547 - p.Trp88*
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
0 Sensitive
4 RR-TB
3 HR-TB
128 MDR-TB
40 Pre-XDR-TB
9 XDR-TB
20 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage2.2.1 | 178 |
| lineage4.8 | 14 |
| lineage4.1 | 3 |
| lineage2.2.1;lineage4.3.3 | 4 |
| lineage2.2.1;lineage4.8 | 2 |
| lineage1.1.2 | 1 |
| lineage4.2.2;lineage4.8 | 1 |
| lineage3 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 204 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR8369894 | Pre-XDR-TB | lineage2.2.1 | None | SRR29539505 | MDR-TB | lineage2.2.1 | None | ERR5864094 | MDR-TB | lineage2.2.1 | None | ERR5866572 | MDR-TB | lineage2.2.1 | None | SRR8330048 | Pre-XDR-TB | lineage2.2.1 | None | ERR13341319 | MDR-TB | lineage2.2.1 | None | ERR5866211 | MDR-TB | lineage2.2.1 | None | ERR7975643 | Pre-XDR-TB | lineage2.2.1 | None | SRR10397122 | MDR-TB | lineage2.2.1 | None | ERR13276029 | Pre-XDR-TB | lineage2.2.1 | None | ERR12307390 | MDR-TB | lineage2.2.1 | None | ERR12307391 | MDR-TB | lineage2.2.1 | None | SRR26937107 | MDR-TB | lineage2.2.1 | None | ERR13273271 | Other | lineage4.8 | None | ERR5865089 | MDR-TB | lineage2.2.1 | None | ERR4872303 | XDR-TB | lineage2.2.1 | None | SRR23310844 | MDR-TB | lineage2.2.1 | None | ERR275226 | MDR-TB | lineage2.2.1 | pt | ERR11049971 | Other | lineage4.8 | None | SRR14782160 | XDR-TB | lineage2.2.1 | None | SRR14782474 | MDR-TB | lineage2.2.1 | None | ERR5864258 | MDR-TB | lineage2.2.1 | None | ERR5864249 | Pre-XDR-TB | lineage2.2.1 | None | SRR14782518 | Pre-XDR-TB | lineage2.2.1 | None | SRR28681416 | MDR-TB | lineage2.2.1 | None | ERR7911253 | MDR-TB | lineage2.2.1 | md | SRR26965297 | Pre-XDR-TB | lineage2.2.1 | None | SRR26965298 | MDR-TB | lineage2.2.1 | None | ERR5865424 | MDR-TB | lineage2.2.1 | None | ERR5865593 | MDR-TB | lineage2.2.1 | None | ERR7911416 | Pre-XDR-TB | lineage2.2.1 | us | ERR7911415 | Pre-XDR-TB | lineage2.2.1 | us | ERR11044660 | MDR-TB | lineage2.2.1 | None | SRR21690683 | Other | lineage4.1 | None | ERR5864101 | MDR-TB | lineage2.2.1 | None | ERR1035242 | MDR-TB | lineage2.2.1 | pt | ERR12916917 | Pre-XDR-TB | lineage2.2.1;lineage4.3.3 | None | SRR8791316 | Pre-XDR-TB | lineage2.2.1 | None | SRR8791319 | Pre-XDR-TB | lineage2.2.1 | None | ERR5865447 | MDR-TB | lineage2.2.1 | None | ERR5864259 | MDR-TB | lineage2.2.1 | None | ERR5865122 | MDR-TB | lineage2.2.1 | None | SRR3085285 | MDR-TB | lineage2.2.1 | None | ERR12307399 | MDR-TB | lineage2.2.1 | None | ERR5865088 | MDR-TB | lineage2.2.1 | None | SRR3085289 | MDR-TB | lineage2.2.1 | None | ERR5865545 | MDR-TB | lineage2.2.1 | None | ERR5865120 | MDR-TB | lineage2.2.1 | None | ERR11043168 | RR-TB | lineage4.8 | None | ERR5864090 | MDR-TB | lineage2.2.1 | None | ERR5864092 | MDR-TB | lineage2.2.1 | None | ERR5864095 | MDR-TB | lineage2.2.1 | None | SRR6384965 | Pre-XDR-TB | lineage2.2.1 | None | SRR10397095 | MDR-TB | lineage2.2.1 | None | SRR14781928 | Other | lineage4.8 | None | ERR5866246 | MDR-TB | lineage2.2.1 | None | ERR5864252 | MDR-TB | lineage2.2.1 | None | ERR5864260 | MDR-TB | lineage2.2.1 | None | ERR5865076 | MDR-TB | lineage2.2.1 | None | ERR5864245 | MDR-TB | lineage2.2.1 | None | ERR5864263 | MDR-TB | lineage2.2.1 | None | ERR12364927 | Other | lineage4.1 | None | ERR12307397 | Pre-XDR-TB | lineage2.2.1;lineage4.8 | None | SRR16088572 | MDR-TB | lineage2.2.1 | None | ERR4827909 | Pre-XDR-TB | lineage2.2.1 | None | ERR5864261 | MDR-TB | lineage2.2.1 | None | ERR5864257 | Pre-XDR-TB | lineage2.2.1 | None | ERR5865328 | MDR-TB | lineage2.2.1 | None | ERR5865330 | Pre-XDR-TB | lineage2.2.1 | None | ERR13267578 | Pre-XDR-TB | lineage2.2.1 | None | ERR12307392 | Other | lineage2.2.1 | None | ERR13262041 | Other | lineage1.1.2 | None | ERR12307393 | RR-TB | lineage2.2.1 | None | SRR28434994 | Pre-XDR-TB | lineage2.2.1 | None | SRR7517694 | MDR-TB | lineage2.2.1 | None | ERR5864093 | MDR-TB | lineage2.2.1 | None | ERR5865074 | MDR-TB | lineage2.2.1 | None | ERR11043233 | Pre-XDR-TB | lineage2.2.1 | None | ERR5866212 | MDR-TB | lineage2.2.1 | None | ERR13285724 | Pre-XDR-TB | lineage2.2.1 | None | ERR5865499 | MDR-TB | lineage2.2.1 | None | SRR7516399 | Pre-XDR-TB | lineage2.2.1 | None | SRR3086364 | MDR-TB | lineage2.2.1 | None | ERR4828139 | MDR-TB | lineage2.2.1 | None | ERR12307395 | Pre-XDR-TB | lineage2.2.1;lineage4.3.3 | None | SRR23310986 | HR-TB | lineage2.2.1 | None | ERR13284548 | RR-TB | lineage4.8 | None | SRR14782715 | XDR-TB | lineage2.2.1 | None | ERR5865448 | MDR-TB | lineage2.2.1 | None | SRR23938698 | MDR-TB | lineage2.2.1 | None | ERR5865075 | MDR-TB | lineage2.2.1 | None | ERR5864264 | MDR-TB | lineage2.2.1 | None | ERR5865450 | RR-TB | lineage2.2.1 | None | ERR5864254 | MDR-TB | lineage2.2.1 | None | ERR13341320 | MDR-TB | lineage2.2.1 | None | ERR10762347 | Pre-XDR-TB | lineage2.2.1 | None | SRR28351314 | MDR-TB | lineage2.2.1 | None | SRR26965296 | MDR-TB | lineage2.2.1 | None | SRR28435005 | MDR-TB | lineage2.2.1 | None | SRR28498559 | XDR-TB | lineage2.2.1 | None | SRR26965295 | Pre-XDR-TB | lineage2.2.1 | None | ERR5865087 | MDR-TB | lineage2.2.1 | None | SRR10379886 | XDR-TB | lineage2.2.1 | None | SRR7516398 | MDR-TB | lineage2.2.1 | None | ERR12307388 | MDR-TB | lineage2.2.1 | None | ERR10762237 | Pre-XDR-TB | lineage2.2.1 | None | ERR11798536 | MDR-TB | lineage2.2.1 | None | ERR5864096 | MDR-TB | lineage2.2.1 | None | ERR5864262 | MDR-TB | lineage2.2.1 | None | SRR6831741 | Other | lineage4.8 | None | SRR18714844 | MDR-TB | lineage2.2.1 | None | ERR5864248 | MDR-TB | lineage2.2.1 | None | ERR12037327 | MDR-TB | lineage2.2.1 | None | SRR7516428 | MDR-TB | lineage2.2.1 | None | ERR4872319 | XDR-TB | lineage2.2.1 | None | ERR5864243 | MDR-TB | lineage2.2.1 | None | SRR14781947 | MDR-TB | lineage2.2.1 | None | SRR21691130 | Other | lineage4.1 | None | ERR4830175 | MDR-TB | lineage2.2.1 | None | ERR4830023 | MDR-TB | lineage2.2.1 | None | ERR5866210 | MDR-TB | lineage2.2.1 | None | SRR28681415 | Pre-XDR-TB | lineage2.2.1 | None | ERR11082441 | MDR-TB | lineage2.2.1;lineage4.3.3 | None | SRR16087958 | MDR-TB | lineage2.2.1 | None | SRR7516307 | MDR-TB | lineage2.2.1 | None | ERR5865544 | MDR-TB | lineage2.2.1 | None | SRR14802104 | MDR-TB | lineage2.2.1 | None | ERR5864099 | MDR-TB | lineage2.2.1 | None | ERR13276119 | Other | lineage4.2.2;lineage4.8 | None | SRR28239780 | MDR-TB | lineage2.2.1 | None | SRR18715457 | Other | lineage4.8 | None | SRR3085288 | MDR-TB | lineage2.2.1 | None | ERR5864267 | HR-TB | lineage2.2.1 | None | ERR4828140 | MDR-TB | lineage2.2.1 | None | ERR5864098 | MDR-TB | lineage2.2.1 | None | ERR5865073 | MDR-TB | lineage2.2.1 | None | ERR12350670 | MDR-TB | lineage2.2.1 | None | ERR13267501 | MDR-TB | lineage2.2.1 | None | ERR5864256 | MDR-TB | lineage2.2.1 | None | ERR5865449 | HR-TB | lineage2.2.1 | None | SRR10380089 | Pre-XDR-TB | lineage2.2.1 | None | ERR5864102 | Pre-XDR-TB | lineage2.2.1 | None | ERR5865878 | Pre-XDR-TB | lineage2.2.1 | None | ERR5865879 | Pre-XDR-TB | lineage2.2.1 | None | SRR23861824 | MDR-TB | lineage2.2.1 | None | ERR11082907 | Other | lineage4.8 | None | SRR18715288 | Other | lineage4.8 | None | ERR5864253 | MDR-TB | lineage2.2.1 | None | ERR13284099 | MDR-TB | lineage2.2.1;lineage4.3.3 | None | ERR5865090 | MDR-TB | lineage2.2.1 | None | ERR5865426 | MDR-TB | lineage2.2.1 | None | ERR5864250 | Pre-XDR-TB | lineage2.2.1 | None | ERR13285892 | Pre-XDR-TB | lineage2.2.1 | None | ERR5865498 | MDR-TB | lineage2.2.1 | None | ERR5865091 | MDR-TB | lineage2.2.1 | None | ERR5865425 | MDR-TB | lineage2.2.1 | None | SRR23861887 | MDR-TB | lineage2.2.1 | None | SRR7517817 | Other | lineage2.2.1 | None | ERR12916926 | Pre-XDR-TB | lineage2.2.1 | None | ERR5865121 | MDR-TB | lineage2.2.1 | None | ERR4872309 | Pre-XDR-TB | lineage2.2.1 | None | ERR13276012 | Other | lineage4.8 | None | SRR14802216 | XDR-TB | lineage2.2.1 | None | ERR5864244 | MDR-TB | lineage2.2.1 | None | ERR5864097 | MDR-TB | lineage2.2.1 | None | SRR6397947 | MDR-TB | lineage2.2.1 | ca | SRR28351424 | XDR-TB | lineage2.2.1 | None | SRR28239428 | Pre-XDR-TB | lineage2.2.1 | None | ERR12916918 | Pre-XDR-TB | lineage2.2.1;lineage4.8 | None | ERR7911712 | MDR-TB | lineage2.2.1 | us | ERR5866245 | MDR-TB | lineage2.2.1 | None | SRR7516294 | MDR-TB | lineage2.2.1 | None | SRR16088196 | MDR-TB | lineage2.2.1 | None | SRR14782019 | Other | lineage4.8 | None | SRR14782413 | Other | lineage4.8 | None | SRR10397116 | MDR-TB | lineage2.2.1 | None | ERR1035202 | MDR-TB | lineage2.2.1 | pt | SRR5153830 | MDR-TB | lineage2.2.1 | None | SRR16088275 | MDR-TB | lineage2.2.1 | None | ERR12307398 | MDR-TB | lineage2.2.1 | None | ERR5864265 | MDR-TB | lineage2.2.1 | None | ERR12350671 | MDR-TB | lineage2.2.1 | None | ERR11773794 | Pre-XDR-TB | lineage2.2.1 | None | SRR28351315 | MDR-TB | lineage2.2.1 | None | ERR12916910 | Pre-XDR-TB | lineage2.2.1 | None | ERR12307389 | MDR-TB | lineage2.2.1 | None | ERR5864091 | MDR-TB | lineage2.2.1 | None | ERR5864255 | MDR-TB | lineage2.2.1 | None | ERR5865592 | MDR-TB | lineage2.2.1 | None | SRR10380194 | XDR-TB | lineage2.2.1 | None | ERR5866571 | MDR-TB | lineage2.2.1 | None | ERR5865329 | Pre-XDR-TB | lineage2.2.1 | None | ERR5864246 | MDR-TB | lineage2.2.1 | None | ERR12341701 | Other | lineage4.8 | None | ERR4827901 | MDR-TB | lineage2.2.1 | None | SRR21733051 | Other | lineage3 | None | ERR5864247 | MDR-TB | lineage2.2.1 | None | ERR5864100 | MDR-TB | lineage2.2.1 | None | SRR14802259 | MDR-TB | lineage2.2.1 | None | SRR7645931 | Other | lineage4.8 | None | ERR5864251 | MDR-TB | lineage2.2.1 | None | ERR5866244 | MDR-TB | lineage2.2.1 | None | SRR24256220 | MDR-TB | lineage2.2.1 | None | SRR10380150 | MDR-TB | lineage2.2.1 | None |
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