Rv3601c - c.-590C>T
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
3 Sensitive
2 RR-TB
8 HR-TB
5 MDR-TB
0 Pre-XDR-TB
0 XDR-TB
76 Other
lineage Counts
| lineage | Count |
|---|---|
| M.canetti;lineage2.1;lineage4.9;lineage6.3 | 4 |
| lineage4.9 | 3 |
| La1.8.1 | 71 |
| M.canetti;lineage2.1;lineage6.3 | 1 |
| lineage4.1.1;lineage4.9 | 1 |
| La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | 2 |
| lineage4.6.3;lineage4.9;lineage6.3 | 1 |
| lineage3 | 3 |
| lineage2.2.1 | 1 |
| La3;lineage4.9 | 1 |
| 1 | |
| lineage2.1;lineage4.3.2;lineage4.9 | 1 |
| La1.7.1 | 1 |
| M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | 2 |
| M.canetti;lineage2.1;lineage4.9 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 94 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR5311078 | MDR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | SRR3675248 | Other | lineage4.9 | None | SRR28858678 | Other | La1.8.1 | None | SRR14296322 | Other | La1.8.1 | None | SRR7236138 | Other | La1.8.1 | None | SRR6325444 | MDR-TB | M.canetti;lineage2.1;lineage6.3 | None | SRR6325442 | HR-TB | lineage4.1.1;lineage4.9 | None | SRR14296389 | Other | La1.8.1 | None | SRR3675450 | HR-TB | La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | SRR3675494 | RR-TB | lineage4.9 | None | SRR14296406 | Other | La1.8.1 | None | ERR5311096 | HR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | SRR14296094 | Other | La1.8.1 | None | SRR14296116 | Other | La1.8.1 | None | SRR14296324 | Other | La1.8.1 | None | ERR6358837 | HR-TB | La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | SRR7236313 | Other | La1.8.1 | None | SRR14296374 | Other | La1.8.1 | None | SRR7236388 | Other | La1.8.1 | None | SRR14296093 | Other | La1.8.1 | None | SRR14296236 | Other | La1.8.1 | None | SRR14296246 | Other | La1.8.1 | None | SRR14296300 | Other | La1.8.1 | None | SRR14296306 | Other | La1.8.1 | None | SRR14296312 | Other | La1.8.1 | None | SRR14296416 | Other | La1.8.1 | None | SRR14296297 | Other | La1.8.1 | None | SRR3675574 | Other | lineage4.6.3;lineage4.9;lineage6.3 | None | ERR13285554 | Sensitive | lineage3 | None | SRR14296145 | Other | La1.8.1 | None | SRR14296096 | Other | La1.8.1 | None | SRR14296262 | Other | La1.8.1 | None | SRR6458421 | MDR-TB | lineage2.2.1 | None | SRR14296263 | Other | La1.8.1 | None | SRR14296200 | Other | La1.8.1 | None | SRR14296360 | Other | La1.8.1 | None | SRR14296388 | Other | La1.8.1 | None | SRR14296144 | Other | La1.8.1 | None | SRR3675554 | HR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | SRR14296148 | Other | La1.8.1 | None | SRR1791976 | Other | La1.8.1 | None | ERR11252612 | Other | La3;lineage4.9 | None | SRR14296173 | Other | La1.8.1 | None | SRR14296149 | Other | La1.8.1 | None | SRR14296170 | Other | La1.8.1 | None | SRR14296266 | Other | La1.8.1 | None | SRR14296412 | Other | La1.8.1 | None | SRR1640750 | Other | None | SRR14296383 | Other | La1.8.1 | None | SRR7236315 | Other | La1.8.1 | None | SRR14296290 | Other | La1.8.1 | None | SRR14296192 | Other | La1.8.1 | None | SRR14296202 | Other | La1.8.1 | None | SRR14296361 | Other | La1.8.1 | None | SRR14296387 | Other | La1.8.1 | None | SRR14296105 | Other | La1.8.1 | None | SRR14296423 | Other | La1.8.1 | None | SRR14296407 | Other | La1.8.1 | None | SRR14296319 | Other | La1.8.1 | None | SRR6045327 | Other | lineage2.1;lineage4.3.2;lineage4.9 | None | SRR3675481 | MDR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | SRR7236310 | Other | La1.8.1 | None | SRR27332357 | Sensitive | lineage3 | None | SRR1791751 | Other | La1.8.1 | None | SRR1792355 | Other | La1.8.1 | None | SRR7240492 | HR-TB | La1.7.1 | None | SRR14296385 | Other | La1.8.1 | None | SRR14296176 | Other | La1.8.1 | None | SRR14296095 | Other | La1.8.1 | None | SRR6325448 | HR-TB | M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | SRR5657436 | Other | La1.8.1 | mx | SRR5657366 | RR-TB | La1.8.1 | mx | SRR5657461 | Other | La1.8.1 | mx | SRR5657407 | Other | La1.8.1 | mx | SRR5657389 | Other | La1.8.1 | mx | SRR5657376 | Other | La1.8.1 | mx | SRR5657435 | Other | La1.8.1 | mx | SRR5657480 | Other | La1.8.1 | mx | SRR5657470 | Other | La1.8.1 | mx | SRR5657387 | Other | La1.8.1 | mx | SRR5657476 | Other | La1.8.1 | mx | SRR5657432 | Other | La1.8.1 | mx | SRR5657379 | Other | La1.8.1 | mx | SRR5657384 | Other | La1.8.1 | mx | SRR5657425 | Other | La1.8.1 | mx | SRR5657408 | Other | La1.8.1 | mx | SRR5657438 | Other | La1.8.1 | mx | SRR5657362 | Other | La1.8.1 | None | SRR14296222 | Other | La1.8.1 | None | SRR14296392 | Other | La1.8.1 | None | ERR5311081 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR6325445 | HR-TB | M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | SRR21689578 | Sensitive | lineage3 | None | SRR6045526 | Other | lineage4.9 | None |
|---|
