lineage | Count |
---|---|
lineage2.2.1 | 31 |
lineage4.1.2.1 | 10 |
lineage4.1.1.3 | 2 |
lineage4.1.1 | 1 |
lineage4.5 | 1 |
lineage1.1.1.1 | 1 |
lineage4.3.4.2 | 3 |
lineage4.8 | 12 |
lineage4.1.2 | 1 |
lineage2.2 | 2 |
La1.8.1 | 2 |
La1.8.2 | 5 |
lineage4.2.2.2 | 3 |
La1.2 | 4 |
lineage3.1.1 | 1 |
lineage4.2.2.1 | 1 |
lineage3 | 3 |
lineage4.3.3 | 11 |
lineage1.2.1.2.1 | 3 |
lineage4.4.1.1 | 2 |
lineage1.2.2.2 | 1 |
lineage4.4.2 | 1 |
lineage4.3.4.1 | 2 |
La1.4 | 1 |
lineage4.2.1 | 3 |
lineage4.1 | 1 |
lineage4.2.1.1 | 2 |
lineage4.9 | 1 |
lineage3.1.2 | 1 |
lineage4.6.2.2 | 1 |
spoligotype | Count |
---|---|
None | 113 |
ID | Drug resistance | Lineage | Country iso2 | ERR4872322 | Pre-XDR-TB | lineage2.2.1 | None | SRR7795461 | HR-TB | lineage4.1.2.1 | None | ERR10748282 | MDR-TB | lineage4.1.1.3 | None | ERR10748570 | MDR-TB | lineage2.2.1 | None | ERR10748284 | MDR-TB | lineage2.2.1 | None | ERR10748302 | MDR-TB | lineage4.1.1 | None | ERR10748328 | MDR-TB | lineage2.2.1 | None | ERR10748335 | MDR-TB | lineage2.2.1 | None | ERR11043308 | Sensitive | lineage4.5 | None | ERR11043178 | Sensitive | lineage1.1.1.1 | None | ERR11043257 | Sensitive | lineage4.1.2.1 | None | ERR11044889 | Sensitive | lineage2.2.1 | None | ERR11044610 | Sensitive | lineage4.3.4.2 | None | ERR11044682 | Sensitive | lineage4.8 | None | ERR11044608 | Sensitive | lineage4.1.2 | None | ERR11044843 | Sensitive | lineage4.1.2.1 | None | ERR4553993 | MDR-TB | lineage2.2 | None | ERR4553718 | MDR-TB | lineage2.2 | None | ERR4553405 | Pre-XDR-TB | lineage4.3.4.2 | None | ERR4553794 | MDR-TB | lineage2.2.1 | None | ERR4627336 | RR-TB | La1.8.1 | None | ERR6140775 | Other | La1.8.2 | None | ERR4627386 | Other | La1.8.1 | None | ERR4796996 | Pre-XDR-TB | lineage2.2.1 | in | ERR5530523 | MDR-TB | lineage4.1.2.1 | None | ERR6139642 | Other | La1.8.2 | None | ERR4797017 | Pre-XDR-TB | lineage4.2.2.2 | in | ERR4797512 | Pre-XDR-TB | lineage2.2.1 | in | ERR6140667 | Other | La1.8.2 | None | ERR6198117 | Other | La1.2 | None | ERR6149470 | Other | La1.8.2 | None | ERR6149923 | Other | La1.8.2 | None | ERR7911321 | MDR-TB | lineage2.2.1 | vn | ERR6201800 | Other | La1.2 | None | ERR6201903 | Other | La1.2 | None | ERR6209348 | Other | La1.2 | None | ERR7764396 | Pre-XDR-TB | lineage4.3.4.2 | None | SRR10869316 | Pre-XDR-TB | lineage2.2.1 | None | ERR11050206 | Sensitive | lineage3.1.1 | None | SRR10869047 | Sensitive | lineage4.1.1.3 | None | ERR11050418 | Sensitive | lineage4.2.2.1 | None | ERR11050291 | Sensitive | lineage4.2.2.2 | None | ERR11050401 | Other | lineage3 | None | ERR11050461 | Sensitive | lineage4.8 | None | ERR11050421 | Sensitive | lineage4.8 | None | SRR13232643 | MDR-TB | lineage2.2.1 | None | ERR11050464 | Sensitive | lineage4.3.3 | None | SRR12006540 | Sensitive | lineage1.2.1.2.1 | None | SRR13232533 | Pre-XDR-TB | lineage2.2.1 | None | SRR12006541 | Sensitive | lineage1.2.1.2.1 | None | SRR14164490 | HR-TB | lineage4.4.1.1 | None | SRR14520066 | Other | lineage1.2.2.2 | None | SRR14164486 | Sensitive | lineage4.1.2.1 | None | SRR14519862 | Sensitive | lineage4.4.2 | None | SRR14781960 | Sensitive | lineage4.3.3 | None | SRR14781959 | MDR-TB | lineage2.2.1 | None | SRR14781964 | Sensitive | lineage4.3.4.1 | None | SRR14782327 | Other | lineage4.8 | None | SRR14782024 | Sensitive | lineage4.3.3 | None | ERR11050571 | Other | La1.4 | None | SRR14782267 | Sensitive | lineage2.2.1 | None | SRR14782478 | MDR-TB | lineage4.2.1 | None | SRR14782358 | MDR-TB | lineage2.2.1 | None | SRR14782437 | Sensitive | lineage2.2.1 | None | SRR14782672 | Sensitive | lineage4.3.3 | None | SRR14782506 | Sensitive | lineage4.8 | None | SRR14782491 | MDR-TB | lineage4.1 | None | SRR14782523 | Sensitive | lineage4.8 | None | SRR14801673 | MDR-TB | lineage4.2.1 | None | SRR14782674 | Sensitive | lineage2.2.1 | None | SRR14782718 | Sensitive | lineage4.3.3 | None | SRR14782767 | MDR-TB | lineage2.2.1 | None | SRR14782711 | Sensitive | lineage4.3.4.1 | None | SRR14782756 | Sensitive | lineage2.2.1 | None | SRR14801551 | Pre-XDR-TB | lineage4.2.1 | None | SRR14801744 | Sensitive | lineage2.2.1 | None | ERR11050687 | Sensitive | lineage4.1.2.1 | None | SRR14802129 | MDR-TB | lineage2.2.1 | None | ERR11050610 | HR-TB | lineage3 | None | SRR16088228 | Other | lineage4.8 | None | SRR18714795 | Sensitive | lineage4.8 | None | SRR18714768 | Sensitive | lineage4.3.3 | None | SRR18715053 | Sensitive | lineage4.3.3 | None | SRR18715098 | Sensitive | lineage2.2.1 | None | SRR18715358 | MDR-TB | lineage2.2.1 | None | SRR18715350 | Sensitive | lineage4.8 | None | SRR18715475 | Other | lineage4.2.1.1 | None | SRR18715422 | MDR-TB | lineage2.2.1 | None | SRR19303954 | HR-TB | lineage4.3.3 | None | SRR18715491 | Sensitive | lineage2.2.1 | None | SRR19303776 | Other | lineage4.1.2.1 | None | SRR21239831 | Sensitive | lineage4.1.2.1 | None | SRR19303977 | Other | lineage1.2.1.2.1 | None | SRR19303957 | Sensitive | lineage4.4.1.1 | None | SRR23080999 | Sensitive | lineage4.9 | None | SRR21240155 | HR-TB | lineage4.3.3 | None | ERR11082643 | Sensitive | lineage4.1.2.1 | None | ERR11082855 | Sensitive | lineage4.2.2.2 | None | SRR23861966 | RR-TB | lineage4.8 | None | SRR23861838 | HR-TB | lineage2.2.1 | None | SRR23861716 | HR-TB | lineage4.3.3 | None | SRR23861983 | Other | lineage2.2.1 | None | SRR23862073 | Sensitive | lineage4.2.1.1 | None | SRR23862019 | Sensitive | lineage4.8 | None | SRR23861990 | Sensitive | lineage4.8 | None | SRR23862198 | Sensitive | lineage4.3.3 | None | SRR23938641 | MDR-TB | lineage2.2.1 | None | SRR23938615 | Pre-XDR-TB | lineage2.2.1 | None | ERR4831443 | Pre-XDR-TB | lineage3.1.2 | pk | SRR23938708 | MDR-TB | lineage2.2.1 | None | ERR11067237 | Sensitive | lineage4.1.2.1 | None | ERR11049712 | Sensitive | lineage4.6.2.2 | None | ERR4831469 | MDR-TB | lineage3 | None |
---|