Rv3794 - c.1899G>A


Drug resistance types
81 Sensitive 2 RR-TB 23 HR-TB 122 MDR-TB 21 Pre-XDR-TB 0 XDR-TB 5 Other
lineage Counts
lineage Count
lineage2.2.1.1 183
lineage4.3.2 25
lineage3 22
lineage4.5 8
lineage4.8 3
lineage1.2.1.2.1 2
lineage4.3.3 2
lineage4.3.4.1 4
lineage4.4.1.1 2
lineage2.2.1 2
lineage2.2.2 1
spoligotype Counts
spoligotype Count
None 254
Geographic prevalence
Country level data for this variant is available for 204 isolates.
Statisctical support
Not enough data to calculate support.
Samples
ID Drug resistance Lineage Country iso2
SRR5525996 MDR-TB lineage2.2.1.1 pg
ERR2706956 MDR-TB lineage4.3.2 cd
SRR5526844 Pre-XDR-TB lineage2.2.1.1 pg
SRR6079922 MDR-TB lineage2.2.1.1 au
ERR2514675 Sensitive lineage3 gb
SRR5527175 Pre-XDR-TB lineage2.2.1.1 pg
SRR5526019 MDR-TB lineage2.2.1.1 pg
ERR2179690 Sensitive lineage4.5 cn
SRR5526922 MDR-TB lineage2.2.1.1 None
ERR4810745 Sensitive lineage4.5 None
SRR5525987 MDR-TB lineage2.2.1.1 pg
SRR5526905 MDR-TB lineage2.2.1.1 None
SRR6079969 Sensitive lineage2.2.1.1 au
ERR2516302 MDR-TB lineage4.3.2 be
SRR6117334 MDR-TB lineage2.2.1.1 au
SRR6079928 HR-TB lineage2.2.1.1 au
SRR6117340 Sensitive lineage2.2.1.1 au
SRR6117330 Sensitive lineage2.2.1.1 au
SRR5551666 MDR-TB lineage2.2.1.1 pg
SRR5527199 MDR-TB lineage2.2.1.1 pg
ERR1193771 Sensitive lineage4.3.2 pt
SRR5527198 MDR-TB lineage2.2.1.1 None
SRR5552561 MDR-TB lineage2.2.1.1 pg
SRR6079950 MDR-TB lineage2.2.1.1 au
ERR2512670 Sensitive lineage3 gb
ERR3276094 Sensitive lineage4.5 nl
ERR4817079 Sensitive lineage4.3.2 gb
SRR6117345 MDR-TB lineage2.2.1.1 au
ERR2513918 Sensitive lineage3 gb
SRR6079944 MDR-TB lineage2.2.1.1 au
ERR4811099 Sensitive lineage4.5 cn
SRR6079968 Sensitive lineage2.2.1.1 au
SRR5525995 MDR-TB lineage2.2.1.1 None
SRR2101299 Sensitive lineage4.8 None
ERR3287408 Sensitive lineage4.3.2 pe
SRR5533151 MDR-TB lineage2.2.1.1 None
SRR6152900 Sensitive lineage1.2.1.2.1 ca
ERR4813970 RR-TB lineage4.3.3 br
SRR5526846 MDR-TB lineage2.2.1.1 None
SRR5520600 HR-TB lineage2.2.1.1 pg
SRR5526784 MDR-TB lineage2.2.1.1 None
SRR5551225 MDR-TB lineage2.2.1.1 pg
SRR8237385 Sensitive lineage2.2.1.1 pg
ERR233371 Sensitive lineage4.8 us
SRR5526788 MDR-TB lineage2.2.1.1 None
SRR6079941 HR-TB lineage2.2.1.1 au
SRR6117350 Sensitive lineage2.2.1.1 au
SRR5520596 HR-TB lineage2.2.1.1 pg
SRR5552562 MDR-TB lineage2.2.1.1 pg
SRR5526639 Pre-XDR-TB lineage2.2.1.1 pg
SRR5551764 MDR-TB lineage2.2.1.1 pg
ERR751499 HR-TB lineage4.3.4.1 pe
SRR5526841 MDR-TB lineage2.2.1.1 None
SRR6117321 Sensitive lineage2.2.1.1 au
SRR6079923 HR-TB lineage2.2.1.1 au
SRR6079937 MDR-TB lineage2.2.1.1 au
SRR6079958 Sensitive lineage2.2.1.1 au
ERR4814051 Sensitive lineage4.3.3 None
ERR2706979 MDR-TB lineage4.3.2 cd
SRR8237387 Sensitive lineage2.2.1.1 pg
ERR2503407 MDR-TB lineage1.2.1.2.1 fi
SRR5525981 Pre-XDR-TB lineage2.2.1.1 None
SRR5550401 RR-TB lineage2.2.1.1 None
SRR6079972 HR-TB lineage2.2.1.1 au
SRR6117337 MDR-TB lineage2.2.1.1 au
SRR5525984 MDR-TB lineage2.2.1.1 None
ERR2707028 MDR-TB lineage4.3.2 cd
SRR5527176 Pre-XDR-TB lineage2.2.1.1 None
SRR5526916 MDR-TB lineage2.2.1.1 pg
SRR5533249 MDR-TB lineage2.2.1.1 pg
SRR6117344 MDR-TB lineage2.2.1.1 au
SRR6117338 MDR-TB lineage2.2.1.1 au
SRR5526157 MDR-TB lineage2.2.1.1 None
SRR6079974 HR-TB lineage2.2.1.1 au
SRR6079914 Sensitive lineage2.2.1.1 au
SRR5526782 MDR-TB lineage2.2.1.1 None
SRR6079955 Sensitive lineage2.2.1.1 au
SRR5526865 Pre-XDR-TB lineage2.2.1.1 pg
SRR6079942 Sensitive lineage2.2.1.1 au
SRR6117331 Sensitive lineage2.2.1.1 au
SRR5520615 Sensitive lineage2.2.1.1 pg
ERR4797795 Pre-XDR-TB lineage3 in
SRR5817475 MDR-TB lineage2.2.1.1 au
SRR5549699 MDR-TB lineage2.2.1.1 pg
ERR4831127 Other lineage4.4.1.1 de
SRR6117346 Sensitive lineage2.2.1.1 au
SRR5527179 MDR-TB lineage2.2.1.1 pg
SRR5533153 MDR-TB lineage2.2.1.1 None
ERR400325 Sensitive lineage2.2.1.1 gb
ERR2707157 MDR-TB lineage4.3.2 cd
SRR5526842 MDR-TB lineage2.2.1.1 pg
SRR6079975 HR-TB lineage2.2.1.1 au
SRR6079930 MDR-TB lineage2.2.1.1 au
SRR5552459 MDR-TB lineage2.2.1.1 pg
SRR5551664 MDR-TB lineage2.2.1.1 pg
SRR6079967 MDR-TB lineage2.2.1.1 au
SRR5551477 MDR-TB lineage2.2.1.1 pg
ERR3335781 Pre-XDR-TB lineage3 pk
SRR6079917 MDR-TB lineage2.2.1.1 au
SRR5525985 MDR-TB lineage2.2.1.1 None
SRR5526332 MDR-TB lineage2.2.1.1 None
SRR5552415 MDR-TB lineage2.2.1.1 pg
ERR2706958 MDR-TB lineage4.3.2 cd
SRR5526360 MDR-TB lineage2.2.1.1 None
SRR5525998 MDR-TB lineage2.2.1.1 pg
SRR6079960 Sensitive lineage2.2.1.1 au
SRR6079964 Sensitive lineage2.2.1.1 au
ERR2707130 MDR-TB lineage4.3.2 cd
ERR2707220 MDR-TB lineage4.3.2 cd
SRR5525983 MDR-TB lineage2.2.1.1 None
ERR2514831 Sensitive lineage2.2.1.1 gb
SRR2100861 Other lineage3 None
SRR8237391 MDR-TB lineage2.2.1.1 pg
ERR2706934 MDR-TB lineage4.3.2 cd
SRR5526843 MDR-TB lineage2.2.1.1 pg
SRR5533152 Pre-XDR-TB lineage2.2.1.1 pg
SRR8237390 Sensitive lineage2.2.1.1 pg
SRR5526642 Pre-XDR-TB lineage2.2.1.1 None
SRR5520599 HR-TB lineage2.2.1.1 pg
SRR5526903 MDR-TB lineage2.2.1.1 None
SRR6079933 MDR-TB lineage2.2.1.1 au
SRR6079971 Sensitive lineage2.2.1.1 au
SRR5552377 MDR-TB lineage2.2.1.1 pg
ERR2707229 MDR-TB lineage4.3.2 cd
SRR5536057 MDR-TB lineage2.2.1.1 pg
SRR6117343 MDR-TB lineage2.2.1.1 au
SRR5527200 MDR-TB lineage2.2.1.1 None
SRR5525997 MDR-TB lineage2.2.1.1 None
SRR5073575 Other lineage2.2.1 vn
SRR5526158 MDR-TB lineage2.2.1.1 pg
SRR5520575 Sensitive lineage2.2.1.1 pg
SRR8237388 HR-TB lineage2.2.1.1 pg
SRR2101326 Sensitive lineage2.2.1.1 None
SRR6117329 MDR-TB lineage2.2.1.1 au
ERR2707134 MDR-TB lineage4.3.2 cd
ERR4811723 Sensitive lineage4.3.4.1 pe
SRR5533143 MDR-TB lineage2.2.1.1 None
ERR3276202 HR-TB lineage4.3.2 nl
SRR6079931 MDR-TB lineage2.2.1.1 au
SRR6079940 MDR-TB lineage2.2.1.1 au
SRR5552560 MDR-TB lineage2.2.1.1 pg
SRR6079915 MDR-TB lineage2.2.1.1 au
ERR2707090 MDR-TB lineage4.3.2 cd
SRR5548263 MDR-TB lineage2.2.1.1 pg
ERR4819847 Sensitive lineage4.3.2 gb
SRR5552663 MDR-TB lineage2.2.1.1 pg
SRR6079924 MDR-TB lineage2.2.1.1 au
SRR5527202 Pre-XDR-TB lineage2.2.1.1 pg
ERR4799445 HR-TB lineage3 in
ERR4818651 Sensitive lineage3 gb
SRR6117325 MDR-TB lineage2.2.1.1 au
SRR5526917 MDR-TB lineage2.2.1.1 None
SRR20970006 Sensitive lineage4.5 None
ERR4796392 Pre-XDR-TB lineage3 in
SRR6040103 Other lineage2.2.1.1 au
ERR4820026 Other lineage3 None
SRR6079954 HR-TB lineage2.2.1.1 au
SRR5527177 MDR-TB lineage2.2.1.1 pg
ERR2514816 Sensitive lineage3 gb
SRR6079934 Sensitive lineage2.2.1.1 au
ERR4811650 Pre-XDR-TB lineage4.5 cn
SRR5552263 MDR-TB lineage2.2.1.1 pg
SRR6079935 MDR-TB lineage2.2.1.1 au
SRR2100330 Sensitive lineage3 None
ERR4798012 Pre-XDR-TB lineage3 in
SRR5520608 Sensitive lineage2.2.1.1 pg
SRR5527178 MDR-TB lineage2.2.1.1 None
SRR5550936 MDR-TB lineage2.2.1.1 pg
SRR5533131 MDR-TB lineage2.2.1.1 None
ERR4810977 Pre-XDR-TB lineage4.5 cn
SRR6079946 Sensitive lineage2.2.1.1 au
SRR5533129 Pre-XDR-TB lineage2.2.1.1 None
SRR5525986 MDR-TB lineage2.2.1.1 None
SRR6079943 Sensitive lineage2.2.1.1 au
ERR7911151 Pre-XDR-TB lineage2.2.2 vn
SRR6117322 MDR-TB lineage2.2.1.1 au
SRR6079966 MDR-TB lineage2.2.1.1 au
SRR6117326 Sensitive lineage2.2.1.1 au
SRR6079939 Sensitive lineage2.2.1.1 au
SRR6079938 MDR-TB lineage2.2.1.1 au
SRR5525982 MDR-TB lineage2.2.1.1 None
SRR5526839 MDR-TB lineage2.2.1.1 None
ERR2706997 MDR-TB lineage4.3.2 cd
SRR5533130 MDR-TB lineage2.2.1.1 pg
SRR6117324 HR-TB lineage2.2.1.1 au
ERR2514791 Sensitive lineage4.8 gb
SRR5552376 MDR-TB lineage2.2.1.1 pg
ERR2512574 Sensitive lineage3 gb
SRR5526775 MDR-TB lineage2.2.1.1 pg
SRR6079956 Sensitive lineage2.2.1.1 au
SRR6079932 HR-TB lineage2.2.1.1 au
SRR6117323 Sensitive lineage2.2.1.1 au
ERR4797482 Sensitive lineage4.5 in
SRR6079970 Sensitive lineage2.2.1.1 au
SRR6079953 MDR-TB lineage2.2.1.1 au
ERR4800521 Sensitive lineage3 in
ERR4820166 Sensitive lineage3 gb
ERR4816547 Sensitive lineage3 gb
ERR4812127 Sensitive lineage4.3.4.1 pe
SRR5525980 MDR-TB lineage2.2.1.1 None
SRR5526785 MDR-TB lineage2.2.1.1 pg
SRR5533179 MDR-TB lineage2.2.1.1 pg
SRR6079936 Sensitive lineage2.2.1.1 au
SRR5520572 HR-TB lineage2.2.1.1 None
SRR5520573 Sensitive lineage2.2.1.1 None
SRR6079918 HR-TB lineage2.2.1.1 au
ERR4797025 Pre-XDR-TB lineage3 in
ERR4799117 Pre-XDR-TB lineage3 in
SRR6079948 Sensitive lineage2.2.1.1 au
SRR6079919 Sensitive lineage2.2.1.1 au
SRR6079951 HR-TB lineage2.2.1.1 au
SRR6117336 Sensitive lineage2.2.1.1 au
SRR6079962 HR-TB lineage2.2.1.1 None
ERR2706976 MDR-TB lineage4.3.2 cd
SRR6003544 MDR-TB lineage2.2.1.1 au
ERR1193773 Sensitive lineage4.3.2 pt
SRR5520594 Sensitive lineage2.2.1.1 pg
SRR6079959 HR-TB lineage2.2.1.1 au
ERR4831032 Sensitive lineage2.2.1 np
SRR6117328 Sensitive lineage2.2.1.1 au
SRR5520607 Sensitive lineage2.2.1.1 pg
SRR5526696 MDR-TB lineage2.2.1.1 None
ERR2707189 MDR-TB lineage4.3.2 cd
SRR5552458 MDR-TB lineage2.2.1.1 pg
SRR5527196 MDR-TB lineage2.2.1.1 None
SRR2100530 Sensitive lineage3 None
ERR2707046 MDR-TB lineage4.3.2 cd
SRR5526787 MDR-TB lineage2.2.1.1 pg
SRR6079947 Sensitive lineage2.2.1.1 au
SRR6079945 HR-TB lineage2.2.1.1 au
SRR5520605 Sensitive lineage2.2.1.1 pg
SRR6079921 MDR-TB lineage2.2.1.1 au
ERR2707182 MDR-TB lineage4.3.2 cd
SRR6117327 Sensitive lineage2.2.1.1 au
SRR5527201 MDR-TB lineage2.2.1.1 pg
SRR6117342 Sensitive lineage2.2.1.1 au
SRR3724951 MDR-TB lineage4.3.2 cd
SRR8237392 Sensitive lineage2.2.1.1 pg
ERR4813301 HR-TB lineage4.3.4.1 pe
SRR5526845 MDR-TB lineage2.2.1.1 None
SRR5526143 MDR-TB lineage2.2.1.1 None
ERR2516332 Sensitive lineage4.4.1.1 be
SRR5526915 Pre-XDR-TB lineage2.2.1.1 pg
SRR6117348 MDR-TB lineage2.2.1.1 au
SRR8237386 Sensitive lineage2.2.1.1 pg
SRR6040100 MDR-TB lineage2.2.1.1 au
SRR6079961 Sensitive lineage2.2.1.1 au
SRR5526351 MDR-TB lineage2.2.1.1 pg
SRR6117320 MDR-TB lineage2.2.1.1 au
SRR5526904 MDR-TB lineage2.2.1.1 None
ERR4796855 Pre-XDR-TB lineage3 in
ERR4797153 Sensitive lineage3 in
ERR4821959 Sensitive lineage4.3.2 gb
SRR6079965 Sensitive lineage2.2.1.1 au