Rv3794 - c.1899G>A
Drug resistance types
81 Sensitive
2 RR-TB
23 HR-TB
122 MDR-TB
21 Pre-XDR-TB
0 XDR-TB
5 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage2.2.1.1 | 183 |
| lineage4.3.2 | 25 |
| lineage3 | 22 |
| lineage4.5 | 8 |
| lineage4.8 | 3 |
| lineage1.2.1.2.1 | 2 |
| lineage4.3.3 | 2 |
| lineage4.3.4.1 | 4 |
| lineage4.4.1.1 | 2 |
| lineage2.2.1 | 2 |
| lineage2.2.2 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 254 |
Geographic prevalence
Country level data for this variant is available for 204 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR5525996 | MDR-TB | lineage2.2.1.1 | pg | ERR2706956 | MDR-TB | lineage4.3.2 | cd | SRR5526844 | Pre-XDR-TB | lineage2.2.1.1 | pg | SRR6079922 | MDR-TB | lineage2.2.1.1 | au | ERR2514675 | Sensitive | lineage3 | gb | SRR5527175 | Pre-XDR-TB | lineage2.2.1.1 | pg | SRR5526019 | MDR-TB | lineage2.2.1.1 | pg | ERR2179690 | Sensitive | lineage4.5 | cn | SRR5526922 | MDR-TB | lineage2.2.1.1 | None | ERR4810745 | Sensitive | lineage4.5 | None | SRR5525987 | MDR-TB | lineage2.2.1.1 | pg | SRR5526905 | MDR-TB | lineage2.2.1.1 | None | SRR6079969 | Sensitive | lineage2.2.1.1 | au | ERR2516302 | MDR-TB | lineage4.3.2 | be | SRR6117334 | MDR-TB | lineage2.2.1.1 | au | SRR6079928 | HR-TB | lineage2.2.1.1 | au | SRR6117340 | Sensitive | lineage2.2.1.1 | au | SRR6117330 | Sensitive | lineage2.2.1.1 | au | SRR5551666 | MDR-TB | lineage2.2.1.1 | pg | SRR5527199 | MDR-TB | lineage2.2.1.1 | pg | ERR1193771 | Sensitive | lineage4.3.2 | pt | SRR5527198 | MDR-TB | lineage2.2.1.1 | None | SRR5552561 | MDR-TB | lineage2.2.1.1 | pg | SRR6079950 | MDR-TB | lineage2.2.1.1 | au | ERR2512670 | Sensitive | lineage3 | gb | ERR3276094 | Sensitive | lineage4.5 | nl | ERR4817079 | Sensitive | lineage4.3.2 | gb | SRR6117345 | MDR-TB | lineage2.2.1.1 | au | ERR2513918 | Sensitive | lineage3 | gb | SRR6079944 | MDR-TB | lineage2.2.1.1 | au | ERR4811099 | Sensitive | lineage4.5 | cn | SRR6079968 | Sensitive | lineage2.2.1.1 | au | SRR5525995 | MDR-TB | lineage2.2.1.1 | None | SRR2101299 | Sensitive | lineage4.8 | None | ERR3287408 | Sensitive | lineage4.3.2 | pe | SRR5533151 | MDR-TB | lineage2.2.1.1 | None | SRR6152900 | Sensitive | lineage1.2.1.2.1 | ca | ERR4813970 | RR-TB | lineage4.3.3 | br | SRR5526846 | MDR-TB | lineage2.2.1.1 | None | SRR5520600 | HR-TB | lineage2.2.1.1 | pg | SRR5526784 | MDR-TB | lineage2.2.1.1 | None | SRR5551225 | MDR-TB | lineage2.2.1.1 | pg | SRR8237385 | Sensitive | lineage2.2.1.1 | pg | ERR233371 | Sensitive | lineage4.8 | us | SRR5526788 | MDR-TB | lineage2.2.1.1 | None | SRR6079941 | HR-TB | lineage2.2.1.1 | au | SRR6117350 | Sensitive | lineage2.2.1.1 | au | SRR5520596 | HR-TB | lineage2.2.1.1 | pg | SRR5552562 | MDR-TB | lineage2.2.1.1 | pg | SRR5526639 | Pre-XDR-TB | lineage2.2.1.1 | pg | SRR5551764 | MDR-TB | lineage2.2.1.1 | pg | ERR751499 | HR-TB | lineage4.3.4.1 | pe | SRR5526841 | MDR-TB | lineage2.2.1.1 | None | SRR6117321 | Sensitive | lineage2.2.1.1 | au | SRR6079923 | HR-TB | lineage2.2.1.1 | au | SRR6079937 | MDR-TB | lineage2.2.1.1 | au | SRR6079958 | Sensitive | lineage2.2.1.1 | au | ERR4814051 | Sensitive | lineage4.3.3 | None | ERR2706979 | MDR-TB | lineage4.3.2 | cd | SRR8237387 | Sensitive | lineage2.2.1.1 | pg | ERR2503407 | MDR-TB | lineage1.2.1.2.1 | fi | SRR5525981 | Pre-XDR-TB | lineage2.2.1.1 | None | SRR5550401 | RR-TB | lineage2.2.1.1 | None | SRR6079972 | HR-TB | lineage2.2.1.1 | au | SRR6117337 | MDR-TB | lineage2.2.1.1 | au | SRR5525984 | MDR-TB | lineage2.2.1.1 | None | ERR2707028 | MDR-TB | lineage4.3.2 | cd | SRR5527176 | Pre-XDR-TB | lineage2.2.1.1 | None | SRR5526916 | MDR-TB | lineage2.2.1.1 | pg | SRR5533249 | MDR-TB | lineage2.2.1.1 | pg | SRR6117344 | MDR-TB | lineage2.2.1.1 | au | SRR6117338 | MDR-TB | lineage2.2.1.1 | au | SRR5526157 | MDR-TB | lineage2.2.1.1 | None | SRR6079974 | HR-TB | lineage2.2.1.1 | au | SRR6079914 | Sensitive | lineage2.2.1.1 | au | SRR5526782 | MDR-TB | lineage2.2.1.1 | None | SRR6079955 | Sensitive | lineage2.2.1.1 | au | SRR5526865 | Pre-XDR-TB | lineage2.2.1.1 | pg | SRR6079942 | Sensitive | lineage2.2.1.1 | au | SRR6117331 | Sensitive | lineage2.2.1.1 | au | SRR5520615 | Sensitive | lineage2.2.1.1 | pg | ERR4797795 | Pre-XDR-TB | lineage3 | in | SRR5817475 | MDR-TB | lineage2.2.1.1 | au | SRR5549699 | MDR-TB | lineage2.2.1.1 | pg | ERR4831127 | Other | lineage4.4.1.1 | de | SRR6117346 | Sensitive | lineage2.2.1.1 | au | SRR5527179 | MDR-TB | lineage2.2.1.1 | pg | SRR5533153 | MDR-TB | lineage2.2.1.1 | None | ERR400325 | Sensitive | lineage2.2.1.1 | gb | ERR2707157 | MDR-TB | lineage4.3.2 | cd | SRR5526842 | MDR-TB | lineage2.2.1.1 | pg | SRR6079975 | HR-TB | lineage2.2.1.1 | au | SRR6079930 | MDR-TB | lineage2.2.1.1 | au | SRR5552459 | MDR-TB | lineage2.2.1.1 | pg | SRR5551664 | MDR-TB | lineage2.2.1.1 | pg | SRR6079967 | MDR-TB | lineage2.2.1.1 | au | SRR5551477 | MDR-TB | lineage2.2.1.1 | pg | ERR3335781 | Pre-XDR-TB | lineage3 | pk | SRR6079917 | MDR-TB | lineage2.2.1.1 | au | SRR5525985 | MDR-TB | lineage2.2.1.1 | None | SRR5526332 | MDR-TB | lineage2.2.1.1 | None | SRR5552415 | MDR-TB | lineage2.2.1.1 | pg | ERR2706958 | MDR-TB | lineage4.3.2 | cd | SRR5526360 | MDR-TB | lineage2.2.1.1 | None | SRR5525998 | MDR-TB | lineage2.2.1.1 | pg | SRR6079960 | Sensitive | lineage2.2.1.1 | au | SRR6079964 | Sensitive | lineage2.2.1.1 | au | ERR2707130 | MDR-TB | lineage4.3.2 | cd | ERR2707220 | MDR-TB | lineage4.3.2 | cd | SRR5525983 | MDR-TB | lineage2.2.1.1 | None | ERR2514831 | Sensitive | lineage2.2.1.1 | gb | SRR2100861 | Other | lineage3 | None | SRR8237391 | MDR-TB | lineage2.2.1.1 | pg | ERR2706934 | MDR-TB | lineage4.3.2 | cd | SRR5526843 | MDR-TB | lineage2.2.1.1 | pg | SRR5533152 | Pre-XDR-TB | lineage2.2.1.1 | pg | SRR8237390 | Sensitive | lineage2.2.1.1 | pg | SRR5526642 | Pre-XDR-TB | lineage2.2.1.1 | None | SRR5520599 | HR-TB | lineage2.2.1.1 | pg | SRR5526903 | MDR-TB | lineage2.2.1.1 | None | SRR6079933 | MDR-TB | lineage2.2.1.1 | au | SRR6079971 | Sensitive | lineage2.2.1.1 | au | SRR5552377 | MDR-TB | lineage2.2.1.1 | pg | ERR2707229 | MDR-TB | lineage4.3.2 | cd | SRR5536057 | MDR-TB | lineage2.2.1.1 | pg | SRR6117343 | MDR-TB | lineage2.2.1.1 | au | SRR5527200 | MDR-TB | lineage2.2.1.1 | None | SRR5525997 | MDR-TB | lineage2.2.1.1 | None | SRR5073575 | Other | lineage2.2.1 | vn | SRR5526158 | MDR-TB | lineage2.2.1.1 | pg | SRR5520575 | Sensitive | lineage2.2.1.1 | pg | SRR8237388 | HR-TB | lineage2.2.1.1 | pg | SRR2101326 | Sensitive | lineage2.2.1.1 | None | SRR6117329 | MDR-TB | lineage2.2.1.1 | au | ERR2707134 | MDR-TB | lineage4.3.2 | cd | ERR4811723 | Sensitive | lineage4.3.4.1 | pe | SRR5533143 | MDR-TB | lineage2.2.1.1 | None | ERR3276202 | HR-TB | lineage4.3.2 | nl | SRR6079931 | MDR-TB | lineage2.2.1.1 | au | SRR6079940 | MDR-TB | lineage2.2.1.1 | au | SRR5552560 | MDR-TB | lineage2.2.1.1 | pg | SRR6079915 | MDR-TB | lineage2.2.1.1 | au | ERR2707090 | MDR-TB | lineage4.3.2 | cd | SRR5548263 | MDR-TB | lineage2.2.1.1 | pg | ERR4819847 | Sensitive | lineage4.3.2 | gb | SRR5552663 | MDR-TB | lineage2.2.1.1 | pg | SRR6079924 | MDR-TB | lineage2.2.1.1 | au | SRR5527202 | Pre-XDR-TB | lineage2.2.1.1 | pg | ERR4799445 | HR-TB | lineage3 | in | ERR4818651 | Sensitive | lineage3 | gb | SRR6117325 | MDR-TB | lineage2.2.1.1 | au | SRR5526917 | MDR-TB | lineage2.2.1.1 | None | SRR20970006 | Sensitive | lineage4.5 | None | ERR4796392 | Pre-XDR-TB | lineage3 | in | SRR6040103 | Other | lineage2.2.1.1 | au | ERR4820026 | Other | lineage3 | None | SRR6079954 | HR-TB | lineage2.2.1.1 | au | SRR5527177 | MDR-TB | lineage2.2.1.1 | pg | ERR2514816 | Sensitive | lineage3 | gb | SRR6079934 | Sensitive | lineage2.2.1.1 | au | ERR4811650 | Pre-XDR-TB | lineage4.5 | cn | SRR5552263 | MDR-TB | lineage2.2.1.1 | pg | SRR6079935 | MDR-TB | lineage2.2.1.1 | au | SRR2100330 | Sensitive | lineage3 | None | ERR4798012 | Pre-XDR-TB | lineage3 | in | SRR5520608 | Sensitive | lineage2.2.1.1 | pg | SRR5527178 | MDR-TB | lineage2.2.1.1 | None | SRR5550936 | MDR-TB | lineage2.2.1.1 | pg | SRR5533131 | MDR-TB | lineage2.2.1.1 | None | ERR4810977 | Pre-XDR-TB | lineage4.5 | cn | SRR6079946 | Sensitive | lineage2.2.1.1 | au | SRR5533129 | Pre-XDR-TB | lineage2.2.1.1 | None | SRR5525986 | MDR-TB | lineage2.2.1.1 | None | SRR6079943 | Sensitive | lineage2.2.1.1 | au | ERR7911151 | Pre-XDR-TB | lineage2.2.2 | vn | SRR6117322 | MDR-TB | lineage2.2.1.1 | au | SRR6079966 | MDR-TB | lineage2.2.1.1 | au | SRR6117326 | Sensitive | lineage2.2.1.1 | au | SRR6079939 | Sensitive | lineage2.2.1.1 | au | SRR6079938 | MDR-TB | lineage2.2.1.1 | au | SRR5525982 | MDR-TB | lineage2.2.1.1 | None | SRR5526839 | MDR-TB | lineage2.2.1.1 | None | ERR2706997 | MDR-TB | lineage4.3.2 | cd | SRR5533130 | MDR-TB | lineage2.2.1.1 | pg | SRR6117324 | HR-TB | lineage2.2.1.1 | au | ERR2514791 | Sensitive | lineage4.8 | gb | SRR5552376 | MDR-TB | lineage2.2.1.1 | pg | ERR2512574 | Sensitive | lineage3 | gb | SRR5526775 | MDR-TB | lineage2.2.1.1 | pg | SRR6079956 | Sensitive | lineage2.2.1.1 | au | SRR6079932 | HR-TB | lineage2.2.1.1 | au | SRR6117323 | Sensitive | lineage2.2.1.1 | au | ERR4797482 | Sensitive | lineage4.5 | in | SRR6079970 | Sensitive | lineage2.2.1.1 | au | SRR6079953 | MDR-TB | lineage2.2.1.1 | au | ERR4800521 | Sensitive | lineage3 | in | ERR4820166 | Sensitive | lineage3 | gb | ERR4816547 | Sensitive | lineage3 | gb | ERR4812127 | Sensitive | lineage4.3.4.1 | pe | SRR5525980 | MDR-TB | lineage2.2.1.1 | None | SRR5526785 | MDR-TB | lineage2.2.1.1 | pg | SRR5533179 | MDR-TB | lineage2.2.1.1 | pg | SRR6079936 | Sensitive | lineage2.2.1.1 | au | SRR5520572 | HR-TB | lineage2.2.1.1 | None | SRR5520573 | Sensitive | lineage2.2.1.1 | None | SRR6079918 | HR-TB | lineage2.2.1.1 | au | ERR4797025 | Pre-XDR-TB | lineage3 | in | ERR4799117 | Pre-XDR-TB | lineage3 | in | SRR6079948 | Sensitive | lineage2.2.1.1 | au | SRR6079919 | Sensitive | lineage2.2.1.1 | au | SRR6079951 | HR-TB | lineage2.2.1.1 | au | SRR6117336 | Sensitive | lineage2.2.1.1 | au | SRR6079962 | HR-TB | lineage2.2.1.1 | None | ERR2706976 | MDR-TB | lineage4.3.2 | cd | SRR6003544 | MDR-TB | lineage2.2.1.1 | au | ERR1193773 | Sensitive | lineage4.3.2 | pt | SRR5520594 | Sensitive | lineage2.2.1.1 | pg | SRR6079959 | HR-TB | lineage2.2.1.1 | au | ERR4831032 | Sensitive | lineage2.2.1 | np | SRR6117328 | Sensitive | lineage2.2.1.1 | au | SRR5520607 | Sensitive | lineage2.2.1.1 | pg | SRR5526696 | MDR-TB | lineage2.2.1.1 | None | ERR2707189 | MDR-TB | lineage4.3.2 | cd | SRR5552458 | MDR-TB | lineage2.2.1.1 | pg | SRR5527196 | MDR-TB | lineage2.2.1.1 | None | SRR2100530 | Sensitive | lineage3 | None | ERR2707046 | MDR-TB | lineage4.3.2 | cd | SRR5526787 | MDR-TB | lineage2.2.1.1 | pg | SRR6079947 | Sensitive | lineage2.2.1.1 | au | SRR6079945 | HR-TB | lineage2.2.1.1 | au | SRR5520605 | Sensitive | lineage2.2.1.1 | pg | SRR6079921 | MDR-TB | lineage2.2.1.1 | au | ERR2707182 | MDR-TB | lineage4.3.2 | cd | SRR6117327 | Sensitive | lineage2.2.1.1 | au | SRR5527201 | MDR-TB | lineage2.2.1.1 | pg | SRR6117342 | Sensitive | lineage2.2.1.1 | au | SRR3724951 | MDR-TB | lineage4.3.2 | cd | SRR8237392 | Sensitive | lineage2.2.1.1 | pg | ERR4813301 | HR-TB | lineage4.3.4.1 | pe | SRR5526845 | MDR-TB | lineage2.2.1.1 | None | SRR5526143 | MDR-TB | lineage2.2.1.1 | None | ERR2516332 | Sensitive | lineage4.4.1.1 | be | SRR5526915 | Pre-XDR-TB | lineage2.2.1.1 | pg | SRR6117348 | MDR-TB | lineage2.2.1.1 | au | SRR8237386 | Sensitive | lineage2.2.1.1 | pg | SRR6040100 | MDR-TB | lineage2.2.1.1 | au | SRR6079961 | Sensitive | lineage2.2.1.1 | au | SRR5526351 | MDR-TB | lineage2.2.1.1 | pg | SRR6117320 | MDR-TB | lineage2.2.1.1 | au | SRR5526904 | MDR-TB | lineage2.2.1.1 | None | ERR4796855 | Pre-XDR-TB | lineage3 | in | ERR4797153 | Sensitive | lineage3 | in | ERR4821959 | Sensitive | lineage4.3.2 | gb | SRR6079965 | Sensitive | lineage2.2.1.1 | au |
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