lineage | Count |
---|---|
lineage4.5 | 2 |
lineage4.2.1 | 15 |
lineage3 | 7 |
lineage4.1.2.1 | 4 |
lineage2 | 1 |
lineage4.3.4.2 | 6 |
lineage4.8 | 4 |
lineage2.2.1 | 20 |
lineage1.1.2 | 1 |
lineage4.3.4.2;lineage4.1.2.1 | 1 |
lineage4.3.3 | 7 |
lineage4.1.1.3 | 3 |
lineage4.6.1.2 | 6 |
lineage4.7 | 2 |
lineage4.1.2 | 1 |
lineage4.2.2.2 | 3 |
lineage4.4.2 | 2 |
lineage4.2.2 | 1 |
lineage4.3.3;lineage3.1 | 1 |
lineage4.3.4.1 | 1 |
lineage2.2.1.1 | 1 |
lineage1.1.3 | 2 |
spoligotype | Count |
---|---|
None | 91 |
ID | Drug resistance | Lineage | Country iso2 | SRR21277567 | Pre-XDR-TB | lineage4.5 | None | ERR11081339 | MDR-TB | lineage4.2.1 | None | SRR22424937 | Pre-XDR-TB | lineage3 | None | ERR4813466 | MDR-TB | lineage4.1.2.1 | pe | SRR6797481 | MDR-TB | lineage2 | None | ERR4813836 | Pre-XDR-TB | lineage4.3.4.2 | None | ERR2041730 | Pre-XDR-TB | lineage4.8 | rs | SRR3105747 | Pre-XDR-TB | lineage3 | None | ERR11081345 | MDR-TB | lineage4.8 | None | SRR6797640 | MDR-TB | lineage2.2.1 | None | ERR4813818 | Pre-XDR-TB | lineage4.3.4.2 | None | SRR3105766 | Pre-XDR-TB | lineage1.1.2 | None | SRR3743416 | MDR-TB | lineage4.2.1 | None | SRR1723667 | MDR-TB | lineage2.2.1 | cn | ERR2510551 | Pre-XDR-TB | lineage3 | pk | ERR2516485 | Pre-XDR-TB | lineage4.3.4.2;lineage4.1.2.1 | pe | SRR5149238 | Pre-XDR-TB | lineage2.2.1 | None | SAMN02350440 | Pre-XDR-TB | lineage4.3.3 | za | ERR2516621 | MDR-TB | lineage4.1.1.3 | nl | ERR2516630 | Pre-XDR-TB | lineage4.3.4.2 | pe | SAMN03246586 | Pre-XDR-TB | lineage2.2.1 | cn | ERR2516734 | Pre-XDR-TB | lineage4.3.4.2 | pe | SRR23311004 | MDR-TB | lineage4.2.1 | None | ERR2516851 | MDR-TB | lineage4.2.1 | gb | ERR2707198 | MDR-TB | lineage4.6.1.2 | cd | ERR4827786 | MDR-TB | lineage4.7 | None | ERR2706925 | MDR-TB | lineage4.6.1.2 | cd | ERR2706990 | MDR-TB | lineage4.6.1.2 | cd | ERR2707008 | MDR-TB | lineage4.6.1.2 | cd | ERR4829486 | Pre-XDR-TB | lineage4.1.2 | it | SRR5818595 | MDR-TB | lineage4.2.2.2 | dj | SRR6797538 | Pre-XDR-TB | lineage2.2.1 | None | ERR4829728 | MDR-TB | lineage4.2.1 | it | SRR671740 | Pre-XDR-TB | lineage4.4.2 | cn | SRR6832503 | HR-TB | lineage2.2.1 | None | ERR1034688 | Pre-XDR-TB | lineage4.2.2 | in | SRR6824444 | Pre-XDR-TB | lineage2.2.1 | cn | SRR847775 | Pre-XDR-TB | lineage4.3.3 | za | SRR7592354 | HR-TB | lineage4.8 | None | SRR7645955 | MDR-TB | lineage4.2.1 | None | ERR038750 | MDR-TB | lineage4.6.1.2 | ug | ERR040137 | MDR-TB | lineage4.1.1.3 | ug | SRR6824289 | MDR-TB | lineage2.2.1 | cn | SRR924224 | Pre-XDR-TB | lineage4.3.3 | None | ERR11043578 | MDR-TB | lineage4.2.1 | None | ERR1034670 | MDR-TB | lineage4.1.1.3 | co | ERR10762390 | MDR-TB | lineage4.2.1 | None | ERR11043129 | MDR-TB | lineage4.2.1 | None | ERR3287773 | MDR-TB | lineage4.1.2.1 | pe | ERR11043923 | MDR-TB | lineage4.8 | None | ERR1193675 | HR-TB | lineage4.3.4.2 | ug | ERR1199112 | MDR-TB | lineage4.6.1.2 | cd | ERR4553919 | Pre-XDR-TB | lineage2.2.1 | None | ERR4457862 | MDR-TB | lineage4.1.2.1 | None | ERR4553918 | Pre-XDR-TB | lineage2.2.1 | None | ERR4553912 | Pre-XDR-TB | lineage2.2.1 | None | ERR4553930 | Pre-XDR-TB | lineage2.2.1 | None | ERR4553911 | Pre-XDR-TB | lineage2.2.1 | None | ERR4553946 | Pre-XDR-TB | lineage2.2.1 | None | ERR4796390 | Pre-XDR-TB | lineage2.2.1 | in | ERR4553983 | Pre-XDR-TB | lineage2.2.1 | None | ERR4798354 | Pre-XDR-TB | lineage2.2.1 | in | ERR4797107 | Pre-XDR-TB | lineage3 | in | ERR4798790 | Pre-XDR-TB | lineage4.3.3;lineage3.1 | in | ERR4798983 | Pre-XDR-TB | lineage4.2.2.2 | in | ERR4799168 | MDR-TB | lineage3 | in | ERR4800094 | Pre-XDR-TB | lineage4.3.4.2 | None | ERR4799683 | Pre-XDR-TB | lineage3 | in | SRR10306011 | Pre-XDR-TB | lineage2.2.1 | None | ERR4812608 | MDR-TB | lineage4.1.2.1 | pe | ERR7911100 | MDR-TB | lineage4.2.1 | md | ERR9907709 | MDR-TB | lineage4.3.4.1 | None | SRR1011483 | Pre-XDR-TB | lineage4.3.3 | None | ERR7737871 | MDR-TB | lineage4.2.2.2 | None | ERR7911256 | MDR-TB | lineage4.2.1 | md | ERR8773874 | Pre-XDR-TB | lineage4.3.3 | None | ERR8773876 | Pre-XDR-TB | lineage4.3.3 | None | ERR9634268 | HR-TB | lineage2.2.1.1 | None | SRR10380130 | MDR-TB | lineage4.2.1 | None | SRR10379998 | MDR-TB | lineage4.2.1 | None | SRR10380093 | MDR-TB | lineage4.2.1 | None | SRR12416846 | MDR-TB | lineage4.7 | None | SRR1062854 | Pre-XDR-TB | lineage4.3.3 | None | SRR11567796 | Pre-XDR-TB | lineage2.2.1 | None | SRR14782790 | MDR-TB | lineage4.2.1 | None | SRR14088386 | Pre-XDR-TB | lineage3 | None | SRR15506895 | MDR-TB | lineage1.1.3 | None | SRR15316364 | Pre-XDR-TB | lineage4.4.2 | None | SRR15316025 | Pre-XDR-TB | lineage4.5 | None | SRR15506896 | MDR-TB | lineage1.1.3 | None | SRR18715490 | Pre-XDR-TB | lineage2.2.1 | None |
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