Rv3854c - c.639_640delGT


Drug resistance types
0 Sensitive 0 RR-TB 35 HR-TB 189 MDR-TB 77 Pre-XDR-TB 2 XDR-TB 21 Other
lineage Counts
lineage Count
lineage2.2.1 320
La3;lineage2.2.1 1
lineage1.2.1.2;lineage2.2.1 1
lineage1.1.3.3;lineage2.2.1 1
lineage1.1.1;lineage2.2.1 1
spoligotype Counts
spoligotype Count
None 324
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
ID Drug resistance Lineage Country iso2
SRR11662485 Pre-XDR-TB lineage2.2.1 None
SRR11662535 MDR-TB lineage2.2.1 None
SRR22249474 Other lineage2.2.1 None
SRR10828626 MDR-TB lineage2.2.1 None
SRR11662501 Pre-XDR-TB lineage2.2.1 None
SRR5184981 MDR-TB lineage2.2.1 None
SRR5709930 MDR-TB lineage2.2.1 th
ERR751775 HR-TB lineage2.2.1 th
SRR5709885 Pre-XDR-TB lineage2.2.1 th
SRR11662463 Pre-XDR-TB lineage2.2.1 None
SRR11662237 MDR-TB lineage2.2.1 None
SRR11662269 MDR-TB lineage2.2.1 None
SRR11662614 MDR-TB lineage2.2.1 None
SRR11662714 MDR-TB lineage2.2.1 None
SRR5709918 Pre-XDR-TB lineage2.2.1 th
SRR11662544 MDR-TB lineage2.2.1 None
SRR11662651 MDR-TB lineage2.2.1 None
SRR5709990 Pre-XDR-TB lineage2.2.1 th
ERR751692 HR-TB lineage2.2.1 th
SRR10341354 MDR-TB lineage2.2.1 None
SRR10828205 Pre-XDR-TB lineage2.2.1 None
SRR10828636 MDR-TB lineage2.2.1 None
SRR11662452 Pre-XDR-TB lineage2.2.1 None
SRR5709993 Pre-XDR-TB lineage2.2.1 th
SRR5184975 MDR-TB lineage2.2.1 None
SRR5184985 MDR-TB lineage2.2.1 None
SRR5709867 Pre-XDR-TB lineage2.2.1 th
SRR26558634 HR-TB lineage2.2.1 None
SRR5709843 Pre-XDR-TB lineage2.2.1 th
SRR11662373 Pre-XDR-TB lineage2.2.1 None
SRR11662702 MDR-TB lineage2.2.1 None
SRR10341346 MDR-TB lineage2.2.1 None
SRR11662155 MDR-TB lineage2.2.1 None
SRR11662336 MDR-TB lineage2.2.1 None
SRR11662348 Pre-XDR-TB lineage2.2.1 None
SRR11662578 MDR-TB lineage2.2.1 None
SAMEA2535154 HR-TB lineage2.2.1 None
SRR11662309 MDR-TB lineage2.2.1 None
SRR2100390 MDR-TB lineage2.2.1 None
SRR5709805 MDR-TB lineage2.2.1 th
SAMEA2534474 Other lineage2.2.1 th
ERR2513260 Other lineage2.2.1 gb
SRR11662351 MDR-TB La3;lineage2.2.1 None
SRR23316633 HR-TB lineage2.2.1 None
SRR21732907 HR-TB lineage2.2.1 None
SRR11662475 MDR-TB lineage2.2.1 None
SRR20969940 Other lineage2.2.1 None
SRR21732856 HR-TB lineage2.2.1 None
ERR553121 HR-TB lineage2.2.1 None
SRR11662256 MDR-TB lineage2.2.1 None
ERR13290668 Pre-XDR-TB lineage2.2.1 None
ERR4816996 Other lineage2.2.1 None
SRR11662146 Pre-XDR-TB lineage2.2.1 None
SRR11662466 MDR-TB lineage2.2.1 None
SRR11662497 MDR-TB lineage2.2.1 None
SRR11662508 Pre-XDR-TB lineage2.2.1 None
SRR11662664 MDR-TB lineage2.2.1 None
SRR11662189 MDR-TB lineage2.2.1 None
SRR11662302 HR-TB lineage2.2.1 None
SRR11662358 MDR-TB lineage2.2.1 None
SRR11662378 MDR-TB lineage2.2.1 None
SRR11662443 MDR-TB lineage2.2.1 None
SRR1166938 Pre-XDR-TB lineage2.2.1 None
SRR5710007 MDR-TB lineage2.2.1 th
SRR5184982 MDR-TB lineage2.2.1 None
SRR5184987 MDR-TB lineage2.2.1 None
ERR10465963 HR-TB lineage2.2.1 None
SRR11662586 MDR-TB lineage2.2.1 None
SRR5709952 MDR-TB lineage2.2.1 th
SRR5710010 Pre-XDR-TB lineage2.2.1 th
SRR11662165 MDR-TB lineage2.2.1 None
SRR11662522 MDR-TB lineage2.2.1 None
SRR11662472 MDR-TB lineage2.2.1 None
SRR11662645 MDR-TB lineage2.2.1 None
ERR553120 HR-TB lineage2.2.1 None
SRR23316612 HR-TB lineage2.2.1 None
SRR5837707 MDR-TB lineage2.2.1 th
SRR5709797 Pre-XDR-TB lineage2.2.1 th
SRR5709825 Pre-XDR-TB lineage2.2.1 th
SRR5709836 HR-TB lineage2.2.1 th
SRR11662450 Pre-XDR-TB lineage2.2.1 None
SRR11662361 MDR-TB lineage2.2.1 None
SRR11662371 MDR-TB lineage2.2.1 None
ERR13284208 MDR-TB lineage2.2.1 None
SRR11662579 MDR-TB lineage2.2.1 None
SRR11662652 MDR-TB lineage2.2.1 None
SRR11662681 MDR-TB lineage2.2.1 None
SRR1162726 Pre-XDR-TB lineage2.2.1 None
ERR2514931 Other lineage2.2.1 gb
ERR751751 MDR-TB lineage2.2.1 th
SRR11662191 MDR-TB lineage2.2.1 None
SRR11662271 Pre-XDR-TB lineage2.2.1 None
SRR5184984 MDR-TB lineage2.2.1 None
ERR11068040 HR-TB lineage2.2.1 None
SRR7069835 Other lineage2.2.1 None
SRR3725012 MDR-TB lineage2.2.1 th
ERR13290667 Pre-XDR-TB lineage2.2.1 None
SRR10828201 Pre-XDR-TB lineage2.2.1 None
SRR11662190 MDR-TB lineage2.2.1 None
SRR11662313 Pre-XDR-TB lineage2.2.1 None
SRR11662359 Pre-XDR-TB lineage2.2.1 None
SRR11662442 MDR-TB lineage2.2.1 None
SRR11662469 MDR-TB lineage2.2.1 None
SRR11662281 Pre-XDR-TB lineage2.2.1 None
SRR11662585 MDR-TB lineage2.2.1 None
SRR11662711 MDR-TB lineage2.2.1 None
SRR11662654 MDR-TB lineage2.2.1 None
SRR11662398 MDR-TB lineage2.2.1 None
SRR11662367 MDR-TB lineage2.2.1 None
SRR11662204 MDR-TB lineage2.2.1 None
SRR5709888 Pre-XDR-TB lineage2.2.1 th
SRR5709769 MDR-TB lineage2.2.1 th
SRR11662160 Pre-XDR-TB lineage2.2.1 None
ERR3639710 MDR-TB lineage2.2.1 None
SRR11662369 MDR-TB lineage2.2.1 None
SRR11662601 MDR-TB lineage2.2.1 None
SRR11662660 MDR-TB lineage2.2.1 None
SRR5709753 MDR-TB lineage2.2.1 th
SRR5709875 MDR-TB lineage2.2.1 th
SRR5709809 MDR-TB lineage2.2.1 th
SRR5709818 MDR-TB lineage1.2.1.2;lineage2.2.1 th
SRR11662538 Pre-XDR-TB lineage2.2.1 None
ERR551028 HR-TB lineage2.2.1 None
SRR11662356 MDR-TB lineage2.2.1 None
SRR11662455 MDR-TB lineage2.2.1 None
SRR11662470 MDR-TB lineage2.2.1 None
SRR11662228 MDR-TB lineage2.2.1 None
SRR11662241 MDR-TB lineage2.2.1 None
SRR5709808 MDR-TB lineage2.2.1 th
SRR5709964 MDR-TB lineage2.2.1 th
SRR2100335 MDR-TB lineage2.2.1 None
SRR5709807 MDR-TB lineage2.2.1 th
ERR114488 MDR-TB lineage2.2.1 None
SRR11662715 MDR-TB lineage2.2.1 None
SRR5710023 XDR-TB lineage2.2.1 th
SRR11662691 Pre-XDR-TB lineage1.1.3.3;lineage2.2.1 None
SRR11662630 MDR-TB lineage2.2.1 None
ERR4798306 Other lineage2.2.1 in
SRR5709889 Pre-XDR-TB lineage2.2.1 th
SRR5709886 Pre-XDR-TB lineage2.2.1 th
SRR5710009 MDR-TB lineage2.2.1 th
SRR5184989 XDR-TB lineage2.2.1 None
ERR551029 HR-TB lineage2.2.1 None
ERR718266 Other lineage2.2.1 th
SRR5709951 MDR-TB lineage2.2.1 th
SRR11662353 MDR-TB lineage2.2.1 None
SRR11662276 MDR-TB lineage2.2.1 None
SRR11662593 MDR-TB lineage2.2.1 None
SRR5709812 MDR-TB lineage2.2.1 th
SRR5709806 MDR-TB lineage2.2.1 th
SRR11662587 MDR-TB lineage2.2.1 None
SRR11662168 MDR-TB lineage2.2.1 None
ERR11043746 Pre-XDR-TB lineage2.2.1 None
SRR14636673 Other lineage2.2.1 None
SRR3055243 MDR-TB lineage2.2.1 None
SRR5709815 Pre-XDR-TB lineage2.2.1 th
SRR5709877 MDR-TB lineage2.2.1 th
SRR5709939 HR-TB lineage2.2.1 th
SRR7517778 MDR-TB lineage2.2.1 th
SRR5184976 MDR-TB lineage2.2.1 None
SRR11662147 MDR-TB lineage2.2.1 None
SRR11662311 MDR-TB lineage2.2.1 None
SRR11662599 MDR-TB lineage2.2.1 None
SRR7070322 HR-TB lineage2.2.1 None
SRR11662230 MDR-TB lineage2.2.1 None
SRR11662235 MDR-TB lineage2.2.1 None
SRR11662495 MDR-TB lineage2.2.1 None
SRR11662567 MDR-TB lineage2.2.1 None
SRR10828624 HR-TB lineage2.2.1 None
SRR11662138 Pre-XDR-TB lineage2.2.1 None
SRR11662254 MDR-TB lineage2.2.1 None
SRR11662372 Pre-XDR-TB lineage2.2.1 None
SRR11662638 MDR-TB lineage2.2.1 None
SRR1564305 MDR-TB lineage2.2.1 None
ERR718462 HR-TB lineage2.2.1 th
ERR718493 MDR-TB lineage2.2.1 th
SRR1595971 MDR-TB lineage2.2.1 None
ERR4821736 HR-TB lineage2.2.1 gb
SRR23316632 HR-TB lineage1.1.1;lineage2.2.1 None
SRR11662427 MDR-TB lineage2.2.1 None
SRR11662375 MDR-TB lineage2.2.1 None
SRR5184988 MDR-TB lineage2.2.1 None
ERR117735 MDR-TB lineage2.2.1 None
SRR11662411 MDR-TB lineage2.2.1 None
SRR11662337 MDR-TB lineage2.2.1 None
SRR11662468 MDR-TB lineage2.2.1 None
SRR5709811 MDR-TB lineage2.2.1 th
SRR3205960 Pre-XDR-TB lineage2.2.1 None
ERR552190 Other lineage2.2.1 None
ERR4800488 Other lineage2.2.1 in
SRR5709751 Pre-XDR-TB lineage2.2.1 th
SRR11662716 MDR-TB lineage2.2.1 None
SRR5709931 Pre-XDR-TB lineage2.2.1 th
ERR751742 Other lineage2.2.1 th
SRR5184986 MDR-TB lineage2.2.1 None
SRR11662713 Pre-XDR-TB lineage2.2.1 None
ERR752225 MDR-TB lineage2.2.1 th
SRR11662366 MDR-TB lineage2.2.1 None
SRR11662478 Pre-XDR-TB lineage2.2.1 None
ERR12311961 Other lineage2.2.1 None
SRR3205961 Pre-XDR-TB lineage2.2.1 None
ERR4797307 Other lineage2.2.1 in
SRR10828641 Pre-XDR-TB lineage2.2.1 None
SRR11662631 MDR-TB lineage2.2.1 None
SRR11662226 Pre-XDR-TB lineage2.2.1 None
SRR5184978 MDR-TB lineage2.2.1 None
SRR5709754 Pre-XDR-TB lineage2.2.1 th
SRR5184980 MDR-TB lineage2.2.1 None
SRR14520068 Other lineage2.2.1 None
SAMN02414989 Pre-XDR-TB lineage2.2.1 se
SRR1595972 MDR-TB lineage2.2.1 None
SRR12072588 MDR-TB lineage2.2.1 None
SRR11662471 MDR-TB lineage2.2.1 None
ERR11049209 MDR-TB lineage2.2.1 None
SRR11662245 MDR-TB lineage2.2.1 None
SRR11662639 MDR-TB lineage2.2.1 None
SRR5709894 Pre-XDR-TB lineage2.2.1 th
SRR11662438 Pre-XDR-TB lineage2.2.1 None
SRR12072601 Pre-XDR-TB lineage2.2.1 None
ERR552191 Other lineage2.2.1 None
SRR11662357 MDR-TB lineage2.2.1 None
ERR11081271 MDR-TB lineage2.2.1 None
SRR5709967 MDR-TB lineage2.2.1 None
SRR5184983 MDR-TB lineage2.2.1 None
SRR11662701 HR-TB lineage2.2.1 None
SRR5709756 Pre-XDR-TB lineage2.2.1 th
SRR5709775 MDR-TB lineage2.2.1 th
ERR117716 MDR-TB lineage2.2.1 None
SRR1595970 MDR-TB lineage2.2.1 None
SRR5837706 MDR-TB lineage2.2.1 th
SRR11662595 MDR-TB lineage2.2.1 None
SRR5709817 MDR-TB lineage2.2.1 th
SRR11662574 MDR-TB lineage2.2.1 None
SRR5709935 Pre-XDR-TB lineage2.2.1 th
SRR5709961 MDR-TB lineage2.2.1 th
ERR4821221 HR-TB lineage2.2.1 gb
SRR11662261 MDR-TB lineage2.2.1 None
SRR7517777 MDR-TB lineage2.2.1 th
SRR11662616 MDR-TB lineage2.2.1 None
ERR718314 HR-TB lineage2.2.1 th
SRR10828185 Pre-XDR-TB lineage2.2.1 None
SRR10828621 Pre-XDR-TB lineage2.2.1 None
SRR10828618 MDR-TB lineage2.2.1 None
SRR11662494 MDR-TB lineage2.2.1 None
SRR5709853 HR-TB lineage2.2.1 th
SRR11662479 Pre-XDR-TB lineage2.2.1 None
SRR21733225 HR-TB lineage2.2.1 None
ERR3639764 Pre-XDR-TB lineage2.2.1 None
SRR11662187 Pre-XDR-TB lineage2.2.1 None
ERR752228 Other lineage2.2.1 th
SRR11662221 MDR-TB lineage2.2.1 None
SRR11662717 Pre-XDR-TB lineage2.2.1 None
SRR5184977 MDR-TB lineage2.2.1 None
SRR11662158 MDR-TB lineage2.2.1 None
SRR23316635 HR-TB lineage2.2.1 None
ERR2446135 Other lineage2.2.1 nl
ERR13290665 Pre-XDR-TB lineage2.2.1 None
ERR13290716 Pre-XDR-TB lineage2.2.1 None
SRR11662365 HR-TB lineage2.2.1 None
SRR11662682 Pre-XDR-TB lineage2.2.1 None
SAMEA2533646 HR-TB lineage2.2.1 None
SRR5709793 Pre-XDR-TB lineage2.2.1 th
SRR5710025 MDR-TB lineage2.2.1 th
ERR718316 Other lineage2.2.1 th
SRR11662315 Pre-XDR-TB lineage2.2.1 None
SRR21733012 HR-TB lineage2.2.1 None
SRR5709879 MDR-TB lineage2.2.1 th
ERR1367667 MDR-TB lineage2.2.1 None
ERR3275639 Other lineage2.2.1 nl
SRR10828202 Pre-XDR-TB lineage2.2.1 None
SRR11662149 MDR-TB lineage2.2.1 None
SRR11662242 MDR-TB lineage2.2.1 None
SRR11662341 MDR-TB lineage2.2.1 None
SRR11662394 Pre-XDR-TB lineage2.2.1 None
SRR11662653 MDR-TB lineage2.2.1 None
SRR11662662 MDR-TB lineage2.2.1 None
ERR2514679 HR-TB lineage2.2.1 gb
SRR11662157 MDR-TB lineage2.2.1 None
SRR11662175 MDR-TB lineage2.2.1 None
SRR11662238 MDR-TB lineage2.2.1 None
SRR11662320 MDR-TB lineage2.2.1 None
SRR11662431 Pre-XDR-TB lineage2.2.1 None
SRR11662564 MDR-TB lineage2.2.1 None
SRR11662641 MDR-TB lineage2.2.1 None
SRR12072602 Pre-XDR-TB lineage2.2.1 None
SRR2100367 MDR-TB lineage2.2.1 None
SRR22249825 HR-TB lineage2.2.1 None
SRR11662340 MDR-TB lineage2.2.1 None
SRR5710011 Pre-XDR-TB lineage2.2.1 th
SRR11662718 Pre-XDR-TB lineage2.2.1 None
SRR11662316 MDR-TB lineage2.2.1 None
SRR11662219 MDR-TB lineage2.2.1 None
SRR11662251 MDR-TB lineage2.2.1 None
SRR11662568 MDR-TB lineage2.2.1 None
SRR10828638 MDR-TB lineage2.2.1 None
SRR11662533 MDR-TB lineage2.2.1 None
SRR11662344 Pre-XDR-TB lineage2.2.1 None
SRR11662176 MDR-TB lineage2.2.1 None
SRR10828620 MDR-TB lineage2.2.1 None
SRR5709927 MDR-TB lineage2.2.1 th
SRR5184979 MDR-TB lineage2.2.1 None
SRR11662453 MDR-TB lineage2.2.1 None
SRR11662243 MDR-TB lineage2.2.1 None
SRR11662339 MDR-TB lineage2.2.1 None
SRR22251950 HR-TB lineage2.2.1 None
SRR5709965 MDR-TB lineage2.2.1 th
SRR11662347 MDR-TB lineage2.2.1 None
SRR11662246 Pre-XDR-TB lineage2.2.1 None
SRR11662310 MDR-TB lineage2.2.1 None
SRR11662518 MDR-TB lineage2.2.1 None
SRR11662527 Pre-XDR-TB lineage2.2.1 None
SRR5709901 MDR-TB lineage2.2.1 th
SRR11662244 Pre-XDR-TB lineage2.2.1 None
ERR11083016 MDR-TB lineage2.2.1 None
SRR10341355 Pre-XDR-TB lineage2.2.1 None
ERR13290666 Pre-XDR-TB lineage2.2.1 None
SRR11662153 MDR-TB lineage2.2.1 None
SRR11662186 MDR-TB lineage2.2.1 None
SRR11662385 MDR-TB lineage2.2.1 None
SRR5709844 MDR-TB lineage2.2.1 th
ERR10465838 HR-TB lineage2.2.1 None
SRR5709773 MDR-TB lineage2.2.1 th
SRR5837709 Pre-XDR-TB lineage2.2.1 th
ERR718521 MDR-TB lineage2.2.1 th