Rv3854c - c.639_640delGT
Drug resistance types
0 Sensitive
0 RR-TB
35 HR-TB
189 MDR-TB
77 Pre-XDR-TB
2 XDR-TB
21 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage2.2.1 | 320 |
| La3;lineage2.2.1 | 1 |
| lineage1.1.3.3;lineage2.2.1 | 1 |
| lineage1.2.1.2;lineage2.2.1 | 1 |
| lineage1.1.1;lineage2.2.1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 324 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR11662244 | Pre-XDR-TB | lineage2.2.1 | None | ERR11068040 | HR-TB | lineage2.2.1 | None | SRR7069835 | Other | lineage2.2.1 | None | SRR3725012 | MDR-TB | lineage2.2.1 | th | SRR5709751 | Pre-XDR-TB | lineage2.2.1 | th | SRR11662716 | MDR-TB | lineage2.2.1 | None | SRR5709931 | Pre-XDR-TB | lineage2.2.1 | th | SRR11662281 | Pre-XDR-TB | lineage2.2.1 | None | SRR11662711 | MDR-TB | lineage2.2.1 | None | SRR11662713 | Pre-XDR-TB | lineage2.2.1 | None | ERR10465838 | HR-TB | lineage2.2.1 | None | SRR5709773 | MDR-TB | lineage2.2.1 | th | SRR5837709 | Pre-XDR-TB | lineage2.2.1 | th | SRR11662366 | MDR-TB | lineage2.2.1 | None | SRR5709888 | Pre-XDR-TB | lineage2.2.1 | th | SRR5709769 | MDR-TB | lineage2.2.1 | th | SRR11662478 | Pre-XDR-TB | lineage2.2.1 | None | SRR11662160 | Pre-XDR-TB | lineage2.2.1 | None | SRR22249474 | Other | lineage2.2.1 | None | SRR10828626 | MDR-TB | lineage2.2.1 | None | SRR3205961 | Pre-XDR-TB | lineage2.2.1 | None | ERR4797307 | Other | lineage2.2.1 | in | SRR11662226 | Pre-XDR-TB | lineage2.2.1 | None | SRR11662369 | MDR-TB | lineage2.2.1 | None | SRR11662601 | MDR-TB | lineage2.2.1 | None | SRR11662660 | MDR-TB | lineage2.2.1 | None | SRR5709753 | MDR-TB | lineage2.2.1 | th | ERR751775 | HR-TB | lineage2.2.1 | th | SRR5709885 | Pre-XDR-TB | lineage2.2.1 | th | SRR11662538 | Pre-XDR-TB | lineage2.2.1 | None | ERR551028 | HR-TB | lineage2.2.1 | None | SRR11662245 | MDR-TB | lineage2.2.1 | None | SRR5709894 | Pre-XDR-TB | lineage2.2.1 | th | SRR11662438 | Pre-XDR-TB | lineage2.2.1 | None | SRR11662455 | MDR-TB | lineage2.2.1 | None | SRR11662470 | MDR-TB | lineage2.2.1 | None | SRR11662357 | MDR-TB | lineage2.2.1 | None | SRR11662228 | MDR-TB | lineage2.2.1 | None | SRR11662241 | MDR-TB | lineage2.2.1 | None | SRR5709990 | Pre-XDR-TB | lineage2.2.1 | th | ERR11081271 | MDR-TB | lineage2.2.1 | None | ERR751692 | HR-TB | lineage2.2.1 | th | SRR10341354 | MDR-TB | lineage2.2.1 | None | SRR5184983 | MDR-TB | lineage2.2.1 | None | SRR11662701 | HR-TB | lineage2.2.1 | None | SRR5709775 | MDR-TB | lineage2.2.1 | th | SRR10828636 | MDR-TB | lineage2.2.1 | None | SRR11662595 | MDR-TB | lineage2.2.1 | None | SRR5709817 | MDR-TB | lineage2.2.1 | th | SRR5709843 | Pre-XDR-TB | lineage2.2.1 | th | SRR11662574 | MDR-TB | lineage2.2.1 | None | SRR5709935 | Pre-XDR-TB | lineage2.2.1 | th | SRR5709961 | MDR-TB | lineage2.2.1 | th | SRR5710023 | XDR-TB | lineage2.2.1 | th | ERR4821221 | HR-TB | lineage2.2.1 | gb | SRR11662702 | MDR-TB | lineage2.2.1 | None | SRR10341346 | MDR-TB | lineage2.2.1 | None | SRR11662155 | MDR-TB | lineage2.2.1 | None | SRR11662336 | MDR-TB | lineage2.2.1 | None | SRR5709889 | Pre-XDR-TB | lineage2.2.1 | th | SRR5709886 | Pre-XDR-TB | lineage2.2.1 | th | SRR5710009 | MDR-TB | lineage2.2.1 | th | SRR5184989 | XDR-TB | lineage2.2.1 | None | ERR718266 | Other | lineage2.2.1 | th | SRR11662479 | Pre-XDR-TB | lineage2.2.1 | None | SRR5709806 | MDR-TB | lineage2.2.1 | th | SRR11662351 | MDR-TB | La3;lineage2.2.1 | None | SRR11662168 | MDR-TB | lineage2.2.1 | None | SRR11662221 | MDR-TB | lineage2.2.1 | None | SRR21732907 | HR-TB | lineage2.2.1 | None | SRR11662475 | MDR-TB | lineage2.2.1 | None | SRR14636673 | Other | lineage2.2.1 | None | SRR7517778 | MDR-TB | lineage2.2.1 | th | SRR5184976 | MDR-TB | lineage2.2.1 | None | SRR23316635 | HR-TB | lineage2.2.1 | None | SRR11662311 | MDR-TB | lineage2.2.1 | None | SRR11662599 | MDR-TB | lineage2.2.1 | None | SRR11662146 | Pre-XDR-TB | lineage2.2.1 | None | SRR11662466 | MDR-TB | lineage2.2.1 | None | SRR11662497 | MDR-TB | lineage2.2.1 | None | SRR11662508 | Pre-XDR-TB | lineage2.2.1 | None | SRR11662664 | MDR-TB | lineage2.2.1 | None | SRR5709793 | Pre-XDR-TB | lineage2.2.1 | th | SRR5710025 | MDR-TB | lineage2.2.1 | th | SRR11662230 | MDR-TB | lineage2.2.1 | None | SRR11662235 | MDR-TB | lineage2.2.1 | None | SRR11662495 | MDR-TB | lineage2.2.1 | None | SRR11662567 | MDR-TB | lineage2.2.1 | None | SRR10828624 | HR-TB | lineage2.2.1 | None | SRR1564305 | MDR-TB | lineage2.2.1 | None | ERR718462 | HR-TB | lineage2.2.1 | th | SRR11662315 | Pre-XDR-TB | lineage2.2.1 | None | ERR718493 | MDR-TB | lineage2.2.1 | th | SRR21733012 | HR-TB | lineage2.2.1 | None | SRR5709879 | MDR-TB | lineage2.2.1 | th | ERR1367667 | MDR-TB | lineage2.2.1 | None | SRR11662149 | MDR-TB | lineage2.2.1 | None | SRR11662242 | MDR-TB | lineage2.2.1 | None | SRR11662341 | MDR-TB | lineage2.2.1 | None | SRR11662394 | Pre-XDR-TB | lineage2.2.1 | None | ERR4821736 | HR-TB | lineage2.2.1 | gb | SRR22249825 | HR-TB | lineage2.2.1 | None | SRR5710011 | Pre-XDR-TB | lineage2.2.1 | th | SRR11662718 | Pre-XDR-TB | lineage2.2.1 | None | ERR553120 | HR-TB | lineage2.2.1 | None | SRR23316612 | HR-TB | lineage2.2.1 | None | SRR11662251 | MDR-TB | lineage2.2.1 | None | SRR5837707 | MDR-TB | lineage2.2.1 | th | SRR11662568 | MDR-TB | lineage2.2.1 | None | SRR11662533 | MDR-TB | lineage2.2.1 | None | SRR11662176 | MDR-TB | lineage2.2.1 | None | ERR117735 | MDR-TB | lineage2.2.1 | None | SRR5709927 | MDR-TB | lineage2.2.1 | th | SRR11662453 | MDR-TB | lineage2.2.1 | None | SRR11662243 | MDR-TB | lineage2.2.1 | None | SRR11662337 | MDR-TB | lineage2.2.1 | None | SRR11662468 | MDR-TB | lineage2.2.1 | None | SRR5709811 | MDR-TB | lineage2.2.1 | th | SRR5709965 | MDR-TB | lineage2.2.1 | th | SRR11662347 | MDR-TB | lineage2.2.1 | None | SRR11662527 | Pre-XDR-TB | lineage2.2.1 | None | ERR2514931 | Other | lineage2.2.1 | gb | ERR751751 | MDR-TB | lineage2.2.1 | th | ERR11083016 | MDR-TB | lineage2.2.1 | None | ERR13290666 | Pre-XDR-TB | lineage2.2.1 | None | SRR10828201 | Pre-XDR-TB | lineage2.2.1 | None | SRR11662153 | MDR-TB | lineage2.2.1 | None | SRR11662186 | MDR-TB | lineage2.2.1 | None | SRR11662190 | MDR-TB | lineage2.2.1 | None | SRR11662313 | Pre-XDR-TB | lineage2.2.1 | None | SRR11662359 | Pre-XDR-TB | lineage2.2.1 | None | SRR5184986 | MDR-TB | lineage2.2.1 | None | SRR11662398 | MDR-TB | lineage2.2.1 | None | SRR11662204 | MDR-TB | lineage2.2.1 | None | ERR752225 | MDR-TB | lineage2.2.1 | th | SRR11662535 | MDR-TB | lineage2.2.1 | None | SRR10828641 | Pre-XDR-TB | lineage2.2.1 | None | SRR11662631 | MDR-TB | lineage2.2.1 | None | SRR5184978 | MDR-TB | lineage2.2.1 | None | SRR5184980 | MDR-TB | lineage2.2.1 | None | SRR11662463 | Pre-XDR-TB | lineage2.2.1 | None | SRR1595972 | MDR-TB | lineage2.2.1 | None | SRR11662471 | MDR-TB | lineage2.2.1 | None | SRR11662237 | MDR-TB | lineage2.2.1 | None | SRR11662269 | MDR-TB | lineage2.2.1 | None | SRR12072601 | Pre-XDR-TB | lineage2.2.1 | None | ERR552191 | Other | lineage2.2.1 | None | SRR11662544 | MDR-TB | lineage2.2.1 | None | SRR11662651 | MDR-TB | lineage2.2.1 | None | SRR5709808 | MDR-TB | lineage2.2.1 | th | SRR5709964 | MDR-TB | lineage2.2.1 | th | SRR5709756 | Pre-XDR-TB | lineage2.2.1 | th | ERR117716 | MDR-TB | lineage2.2.1 | None | SRR11662715 | MDR-TB | lineage2.2.1 | None | SRR5837706 | MDR-TB | lineage2.2.1 | th | SRR11662691 | Pre-XDR-TB | lineage1.1.3.3;lineage2.2.1 | None | SRR11662630 | MDR-TB | lineage2.2.1 | None | ERR4798306 | Other | lineage2.2.1 | in | SRR11662616 | MDR-TB | lineage2.2.1 | None | SRR2100390 | MDR-TB | lineage2.2.1 | None | ERR718314 | HR-TB | lineage2.2.1 | th | SRR10828185 | Pre-XDR-TB | lineage2.2.1 | None | SRR10828621 | Pre-XDR-TB | lineage2.2.1 | None | SRR10828618 | MDR-TB | lineage2.2.1 | None | SRR11662494 | MDR-TB | lineage2.2.1 | None | ERR551029 | HR-TB | lineage2.2.1 | None | SRR5709853 | HR-TB | lineage2.2.1 | th | SRR21733225 | HR-TB | lineage2.2.1 | None | ERR3639764 | Pre-XDR-TB | lineage2.2.1 | None | SRR11662187 | Pre-XDR-TB | lineage2.2.1 | None | ERR752228 | Other | lineage2.2.1 | th | SRR23316633 | HR-TB | lineage2.2.1 | None | ERR11043746 | Pre-XDR-TB | lineage2.2.1 | None | SRR11662717 | Pre-XDR-TB | lineage2.2.1 | None | SRR3055243 | MDR-TB | lineage2.2.1 | None | SRR11662158 | MDR-TB | lineage2.2.1 | None | SRR20969940 | Other | lineage2.2.1 | None | ERR553121 | HR-TB | lineage2.2.1 | None | ERR2446135 | Other | lineage2.2.1 | nl | SRR11662256 | MDR-TB | lineage2.2.1 | None | ERR13290668 | Pre-XDR-TB | lineage2.2.1 | None | SRR11662682 | Pre-XDR-TB | lineage2.2.1 | None | ERR4816996 | Other | lineage2.2.1 | None | SRR11662189 | MDR-TB | lineage2.2.1 | None | SRR11662302 | HR-TB | lineage2.2.1 | None | SRR11662358 | MDR-TB | lineage2.2.1 | None | SRR11662378 | MDR-TB | lineage2.2.1 | None | SRR11662443 | MDR-TB | lineage2.2.1 | None | SRR1166938 | Pre-XDR-TB | lineage2.2.1 | None | ERR718316 | Other | lineage2.2.1 | th | SRR11662138 | Pre-XDR-TB | lineage2.2.1 | None | SRR11662254 | MDR-TB | lineage2.2.1 | None | SRR11662372 | Pre-XDR-TB | lineage2.2.1 | None | SRR11662638 | MDR-TB | lineage2.2.1 | None | SRR5710007 | MDR-TB | lineage2.2.1 | th | SRR5184982 | MDR-TB | lineage2.2.1 | None | SRR1595971 | MDR-TB | lineage2.2.1 | None | SRR11662586 | MDR-TB | lineage2.2.1 | None | SRR11662472 | MDR-TB | lineage2.2.1 | None | SRR11662645 | MDR-TB | lineage2.2.1 | None | SRR11662316 | MDR-TB | lineage2.2.1 | None | SRR11662219 | MDR-TB | lineage2.2.1 | None | SRR11662427 | MDR-TB | lineage2.2.1 | None | SRR5184988 | MDR-TB | lineage2.2.1 | None | SRR11662411 | MDR-TB | lineage2.2.1 | None | SRR11662361 | MDR-TB | lineage2.2.1 | None | SRR11662371 | MDR-TB | lineage2.2.1 | None | ERR13284208 | MDR-TB | lineage2.2.1 | None | SRR5184979 | MDR-TB | lineage2.2.1 | None | SRR3205960 | Pre-XDR-TB | lineage2.2.1 | None | SRR22251950 | HR-TB | lineage2.2.1 | None | SRR11662518 | MDR-TB | lineage2.2.1 | None | SRR11662681 | MDR-TB | lineage2.2.1 | None | SRR1162726 | Pre-XDR-TB | lineage2.2.1 | None | SRR5709901 | MDR-TB | lineage2.2.1 | th | SRR11662191 | MDR-TB | lineage2.2.1 | None | SRR11662271 | Pre-XDR-TB | lineage2.2.1 | None | ERR552190 | Other | lineage2.2.1 | None | ERR4800488 | Other | lineage2.2.1 | in | SRR5184984 | MDR-TB | lineage2.2.1 | None | SRR10341355 | Pre-XDR-TB | lineage2.2.1 | None | ERR13290667 | Pre-XDR-TB | lineage2.2.1 | None | SRR11662442 | MDR-TB | lineage2.2.1 | None | SRR11662469 | MDR-TB | lineage2.2.1 | None | ERR751742 | Other | lineage2.2.1 | th | SRR11662385 | MDR-TB | lineage2.2.1 | None | SRR11662585 | MDR-TB | lineage2.2.1 | None | SRR11662654 | MDR-TB | lineage2.2.1 | None | SRR5709844 | MDR-TB | lineage2.2.1 | th | SRR11662367 | MDR-TB | lineage2.2.1 | None | ERR718521 | MDR-TB | lineage2.2.1 | th | SRR11662485 | Pre-XDR-TB | lineage2.2.1 | None | ERR12311961 | Other | lineage2.2.1 | None | SRR11662501 | Pre-XDR-TB | lineage2.2.1 | None | SRR5184981 | MDR-TB | lineage2.2.1 | None | ERR3639710 | MDR-TB | lineage2.2.1 | None | SRR5709930 | MDR-TB | lineage2.2.1 | th | SRR5709754 | Pre-XDR-TB | lineage2.2.1 | th | SRR14520068 | Other | lineage2.2.1 | None | SAMN02414989 | Pre-XDR-TB | lineage2.2.1 | se | SRR5709875 | MDR-TB | lineage2.2.1 | th | SRR5709809 | MDR-TB | lineage2.2.1 | th | SRR5709818 | MDR-TB | lineage1.2.1.2;lineage2.2.1 | th | SRR12072588 | MDR-TB | lineage2.2.1 | None | ERR11049209 | MDR-TB | lineage2.2.1 | None | SRR11662639 | MDR-TB | lineage2.2.1 | None | SRR11662614 | MDR-TB | lineage2.2.1 | None | SRR11662714 | MDR-TB | lineage2.2.1 | None | SRR11662356 | MDR-TB | lineage2.2.1 | None | SRR5709918 | Pre-XDR-TB | lineage2.2.1 | th | SRR5709967 | MDR-TB | lineage2.2.1 | None | SRR2100335 | MDR-TB | lineage2.2.1 | None | SRR5709807 | MDR-TB | lineage2.2.1 | th | SRR10828205 | Pre-XDR-TB | lineage2.2.1 | None | ERR114488 | MDR-TB | lineage2.2.1 | None | SRR11662452 | Pre-XDR-TB | lineage2.2.1 | None | SRR5709993 | Pre-XDR-TB | lineage2.2.1 | th | SRR5184975 | MDR-TB | lineage2.2.1 | None | SRR5184985 | MDR-TB | lineage2.2.1 | None | SRR5709867 | Pre-XDR-TB | lineage2.2.1 | th | SRR1595970 | MDR-TB | lineage2.2.1 | None | SRR26558634 | HR-TB | lineage2.2.1 | None | SRR11662373 | Pre-XDR-TB | lineage2.2.1 | None | SRR11662261 | MDR-TB | lineage2.2.1 | None | SRR11662348 | Pre-XDR-TB | lineage2.2.1 | None | SRR11662578 | MDR-TB | lineage2.2.1 | None | SAMEA2535154 | HR-TB | lineage2.2.1 | None | SRR7517777 | MDR-TB | lineage2.2.1 | th | SRR11662309 | MDR-TB | lineage2.2.1 | None | SRR5709805 | MDR-TB | lineage2.2.1 | th | SAMEA2534474 | Other | lineage2.2.1 | th | ERR2513260 | Other | lineage2.2.1 | gb | SRR5709951 | MDR-TB | lineage2.2.1 | th | SRR11662353 | MDR-TB | lineage2.2.1 | None | SRR11662276 | MDR-TB | lineage2.2.1 | None | SRR11662593 | MDR-TB | lineage2.2.1 | None | SRR5709812 | MDR-TB | lineage2.2.1 | th | SRR11662587 | MDR-TB | lineage2.2.1 | None | SRR5184977 | MDR-TB | lineage2.2.1 | None | SRR5709815 | Pre-XDR-TB | lineage2.2.1 | th | SRR5709877 | MDR-TB | lineage2.2.1 | th | SRR5709939 | HR-TB | lineage2.2.1 | th | SRR21732856 | HR-TB | lineage2.2.1 | None | SRR11662147 | MDR-TB | lineage2.2.1 | None | ERR13290665 | Pre-XDR-TB | lineage2.2.1 | None | ERR13290716 | Pre-XDR-TB | lineage2.2.1 | None | SRR11662365 | HR-TB | lineage2.2.1 | None | SAMEA2533646 | HR-TB | lineage2.2.1 | None | SRR7070322 | HR-TB | lineage2.2.1 | None | SRR5184987 | MDR-TB | lineage2.2.1 | None | ERR10465963 | HR-TB | lineage2.2.1 | None | ERR3275639 | Other | lineage2.2.1 | nl | SRR10828202 | Pre-XDR-TB | lineage2.2.1 | None | SRR11662653 | MDR-TB | lineage2.2.1 | None | SRR11662662 | MDR-TB | lineage2.2.1 | None | ERR2514679 | HR-TB | lineage2.2.1 | gb | SRR11662157 | MDR-TB | lineage2.2.1 | None | SRR11662175 | MDR-TB | lineage2.2.1 | None | SRR11662238 | MDR-TB | lineage2.2.1 | None | SRR11662320 | MDR-TB | lineage2.2.1 | None | SRR11662431 | Pre-XDR-TB | lineage2.2.1 | None | SRR11662564 | MDR-TB | lineage2.2.1 | None | SRR11662641 | MDR-TB | lineage2.2.1 | None | SRR12072602 | Pre-XDR-TB | lineage2.2.1 | None | SRR2100367 | MDR-TB | lineage2.2.1 | None | SRR11662340 | MDR-TB | lineage2.2.1 | None | SRR5709952 | MDR-TB | lineage2.2.1 | th | SRR5710010 | Pre-XDR-TB | lineage2.2.1 | th | SRR11662165 | MDR-TB | lineage2.2.1 | None | SRR11662522 | MDR-TB | lineage2.2.1 | None | SRR23316632 | HR-TB | lineage1.1.1;lineage2.2.1 | None | SRR5709797 | Pre-XDR-TB | lineage2.2.1 | th | SRR5709825 | Pre-XDR-TB | lineage2.2.1 | th | SRR5709836 | HR-TB | lineage2.2.1 | th | SRR11662375 | MDR-TB | lineage2.2.1 | None | SRR10828638 | MDR-TB | lineage2.2.1 | None | SRR11662344 | Pre-XDR-TB | lineage2.2.1 | None | SRR11662450 | Pre-XDR-TB | lineage2.2.1 | None | SRR11662579 | MDR-TB | lineage2.2.1 | None | SRR10828620 | MDR-TB | lineage2.2.1 | None | SRR11662339 | MDR-TB | lineage2.2.1 | None | SRR11662246 | Pre-XDR-TB | lineage2.2.1 | None | SRR11662310 | MDR-TB | lineage2.2.1 | None | SRR11662652 | MDR-TB | lineage2.2.1 | None |
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