Rv3854c - c.639_640delGT


Drug resistance types
0 Sensitive 0 RR-TB 29 HR-TB 179 MDR-TB 60 Pre-XDR-TB 2 XDR-TB 19 Other
lineage Counts
lineage Count
lineage2.2.1 285
lineage2.2.1;lineage1.1.1 1
lineage2.2.1;lineage1.2.1.2 1
lineage4.1.1 1
lineage2.2.1;La3 1
spoligotype Counts
spoligotype Count
None 289
Geographic prevalence
Country level data for this variant is available for 83 isolates.
Statisctical support
Not enough data to calculate support.
Samples
ID Drug resistance Lineage Country iso2
SRR11662463 Pre-XDR-TB lineage2.2.1 None
SRR11662246 Pre-XDR-TB lineage2.2.1 None
SRR11662243 MDR-TB lineage2.2.1 None
SRR11662527 Pre-XDR-TB lineage2.2.1 None
SRR11662242 MDR-TB lineage2.2.1 None
SRR11662238 MDR-TB lineage2.2.1 None
SRR11662455 MDR-TB lineage2.2.1 None
SRR11662438 Pre-XDR-TB lineage2.2.1 None
SRR11662452 Pre-XDR-TB lineage2.2.1 None
SRR11662367 MDR-TB lineage2.2.1 None
SRR11662443 MDR-TB lineage2.2.1 None
SRR11662431 Pre-XDR-TB lineage2.2.1 None
SRR11662361 MDR-TB lineage2.2.1 None
SRR11662365 HR-TB lineage2.2.1 None
SRR11662357 MDR-TB lineage2.2.1 None
SRR11662358 MDR-TB lineage2.2.1 None
SRR11662138 Pre-XDR-TB lineage2.2.1 None
SRR11662356 MDR-TB lineage2.2.1 None
SRR11662599 MDR-TB lineage2.2.1 None
SRR1162726 Pre-XDR-TB lineage2.2.1 None
SRR11662411 MDR-TB lineage2.2.1 None
SRR11662601 MDR-TB lineage2.2.1 None
SRR11662595 MDR-TB lineage2.2.1 None
SRR11662168 MDR-TB lineage2.2.1 None
SRR11662165 MDR-TB lineage2.2.1 None
SRR11662158 MDR-TB lineage2.2.1 None
SRR1166938 Pre-XDR-TB lineage2.2.1 None
SRR11662593 MDR-TB lineage2.2.1 None
SRR11662494 MDR-TB lineage2.2.1 None
SRR11662497 MDR-TB lineage2.2.1 None
SRR11662495 MDR-TB lineage2.2.1 None
SRR11662501 Pre-XDR-TB lineage2.2.1 None
SRR11662155 MDR-TB lineage2.2.1 None
SRR11662149 MDR-TB lineage2.2.1 None
SRR11662152 Pre-XDR-TB lineage2.2.1 None
SRR11662147 MDR-TB lineage2.2.1 None
SRR11662485 Pre-XDR-TB lineage2.2.1 None
SRR11662191 MDR-TB lineage2.2.1 None
SRR11662146 Pre-XDR-TB lineage2.2.1 None
SRR11662479 Pre-XDR-TB lineage2.2.1 None
SRR11662190 MDR-TB lineage2.2.1 None
SRR12072594 Pre-XDR-TB lineage2.2.1 None
SRR11662189 MDR-TB lineage2.2.1 None
SRR12072601 Pre-XDR-TB lineage2.2.1 None
SRR11662187 Pre-XDR-TB lineage2.2.1 None
SRR11662176 MDR-TB lineage2.2.1 None
SRR14636673 Other lineage2.2.1 None
SRR12072588 MDR-TB lineage2.2.1 None
SRR12072602 Pre-XDR-TB lineage2.2.1 None
SRR14520068 Other lineage2.2.1 None
SRR11662394 Pre-XDR-TB lineage2.2.1 None
SRR11662398 MDR-TB lineage2.2.1 None
SRR11662315 Pre-XDR-TB lineage2.2.1 None
SRR11662311 MDR-TB lineage2.2.1 None
SRR11662221 MDR-TB lineage2.2.1 None
SRR11662310 MDR-TB lineage2.2.1 None
SRR11662305 Pre-XDR-TB lineage2.2.1 None
SRR11662302 HR-TB lineage2.2.1 None
SRR11662219 MDR-TB lineage2.2.1 None
SRR11662316 MDR-TB lineage2.2.1 None
SRR11662309 MDR-TB lineage2.2.1 None
SRR11662721 MDR-TB lineage2.2.1 None
SRR11662713 Pre-XDR-TB lineage2.2.1 None
SRR18213900 MDR-TB lineage2.2.1 None
SRR11662718 Pre-XDR-TB lineage2.2.1 None
SRR11662716 MDR-TB lineage2.2.1 None
SRR11662717 Pre-XDR-TB lineage2.2.1 None
SRR11662715 MDR-TB lineage2.2.1 None
SRR11662714 MDR-TB lineage2.2.1 None
SRR11662587 MDR-TB lineage2.2.1 None
SRR11662586 MDR-TB lineage2.2.1 None
SRR11662711 MDR-TB lineage2.2.1 None
SRR11662585 MDR-TB lineage2.2.1 None
SRR11662574 MDR-TB lineage2.2.1 None
SRR11662579 HR-TB lineage2.2.1 None
SRR11662578 MDR-TB lineage2.2.1 None
SRR11662567 MDR-TB lineage2.2.1 None
SRR11662568 MDR-TB lineage2.2.1 None
SRR11662475 MDR-TB lineage2.2.1 None
SRR11662518 MDR-TB lineage2.2.1 None
SRR11662522 MDR-TB lineage2.2.1 None
SRR11662469 MDR-TB lineage2.2.1 None
SRR11662472 MDR-TB lineage2.2.1 None
SRR11662385 MDR-TB lineage2.2.1 None
SRR11662204 MDR-TB lineage2.2.1 None
SRR11662471 MDR-TB lineage2.2.1 None
SRR11662470 MDR-TB lineage2.2.1 None
SRR20969940 Other lineage2.2.1 None
SRR11662378 MDR-TB lineage2.2.1 None
ERR11083016 MDR-TB lineage2.2.1 None
SRR5709967 MDR-TB lineage2.2.1 None
ERR11081271 MDR-TB lineage2.2.1 None
ERR11068040 HR-TB lineage2.2.1 None
SRR23316633 HR-TB lineage2.2.1 None
SRR23316632 HR-TB lineage2.2.1;lineage1.1.1 None
SRR23316612 HR-TB lineage2.2.1 None
SRR3205960 Pre-XDR-TB lineage2.2.1 None
SRR23316635 HR-TB lineage2.2.1 None
SRR21733012 HR-TB lineage2.2.1 None
SRR26558634 HR-TB lineage2.2.1 None
SRR22249825 HR-TB lineage2.2.1 None
SRR3205961 Pre-XDR-TB lineage2.2.1 None
SRR21732856 HR-TB lineage2.2.1 None
SRR5709818 MDR-TB lineage2.2.1;lineage1.2.1.2 th
SRR5709815 Pre-XDR-TB lineage2.2.1 th
SRR5837706 MDR-TB lineage2.2.1 th
SRR5709885 Pre-XDR-TB lineage2.2.1 th
SRR5709951 MDR-TB lineage2.2.1 th
SRR5709775 MDR-TB lineage2.2.1 th
SRR5709769 MDR-TB lineage2.2.1 th
SRR5710011 Pre-XDR-TB lineage2.2.1 th
SRR5709867 Pre-XDR-TB lineage2.2.1 th
SRR5709961 MDR-TB lineage2.2.1 th
SRR5709812 MDR-TB lineage2.2.1 th
SRR5709797 Pre-XDR-TB lineage2.2.1 th
SRR5709807 MDR-TB lineage2.2.1 th
SRR5709964 MDR-TB lineage2.2.1 th
SRR5709811 MDR-TB lineage2.2.1 th
SRR5710010 Pre-XDR-TB lineage2.2.1 th
SRR5709843 Pre-XDR-TB lineage2.2.1 th
SRR5709952 MDR-TB lineage2.2.1 th
SRR5709935 Pre-XDR-TB lineage2.2.1 th
SRR5709805 MDR-TB lineage2.2.1 th
SRR5709993 Pre-XDR-TB lineage2.2.1 th
SRR5709918 Pre-XDR-TB lineage2.2.1 th
SRR5709751 Pre-XDR-TB lineage2.2.1 th
SRR5709817 MDR-TB lineage2.2.1 th
SRR5709853 HR-TB lineage2.2.1 th
SRR5709990 Pre-XDR-TB lineage2.2.1 th
SRR5837707 MDR-TB lineage2.2.1 th
SRR5709773 MDR-TB lineage2.2.1 th
SRR5709879 MDR-TB lineage2.2.1 th
SRR5709930 MDR-TB lineage2.2.1 th
SRR5709965 MDR-TB lineage2.2.1 th
SRR5710007 MDR-TB lineage2.2.1 th
SRR5709877 MDR-TB lineage2.2.1 th
SRR5709793 Pre-XDR-TB lineage2.2.1 th
SRR5710025 MDR-TB lineage2.2.1 th
SRR5710023 XDR-TB lineage2.2.1 th
SRR5709889 Pre-XDR-TB lineage2.2.1 th
SRR5709754 Pre-XDR-TB lineage2.2.1 th
SRR5837709 Pre-XDR-TB lineage2.2.1 th
SRR5709927 MDR-TB lineage2.2.1 th
SRR5709806 MDR-TB lineage2.2.1 th
SRR5709888 Pre-XDR-TB lineage2.2.1 th
SRR5709931 Pre-XDR-TB lineage2.2.1 th
SRR5709809 MDR-TB lineage2.2.1 th
SRR5709753 MDR-TB lineage2.2.1 th
SRR5709886 Pre-XDR-TB lineage2.2.1 th
SRR5709901 MDR-TB lineage2.2.1 th
SRR5709836 HR-TB lineage2.2.1 th
SRR5709875 MDR-TB lineage2.2.1 th
SRR5709808 MDR-TB lineage2.2.1 th
SRR5709825 Pre-XDR-TB lineage2.2.1 th
SRR5709939 HR-TB lineage2.2.1 th
SRR5709894 Pre-XDR-TB lineage2.2.1 th
SRR5710009 MDR-TB lineage2.2.1 th
SRR5709756 Pre-XDR-TB lineage2.2.1 th
SRR3055243 MDR-TB lineage2.2.1 None
SRR5709844 MDR-TB lineage2.2.1 th
ERR4816996 Other lineage2.2.1 None
SRR3725012 MDR-TB lineage2.2.1 th
ERR11049209 MDR-TB lineage2.2.1 None
ERR718314 HR-TB lineage2.2.1 th
SRR7517778 MDR-TB lineage2.2.1 th
SRR7517777 MDR-TB lineage2.2.1 th
ERR751692 HR-TB lineage2.2.1 th
ERR718521 MDR-TB lineage2.2.1 th
ERR718493 MDR-TB lineage2.2.1 th
ERR751751 MDR-TB lineage2.2.1 th
ERR751775 HR-TB lineage2.2.1 th
ERR3275639 Other lineage2.2.1 nl
ERR718266 Other lineage2.2.1 th
ERR718316 Other lineage2.2.1 th
ERR718462 HR-TB lineage2.2.1 th
SAMEA2534474 Other lineage2.2.1 th
ERR752225 MDR-TB lineage2.2.1 th
ERR752228 Other lineage2.2.1 th
ERR751742 Other lineage2.2.1 th
SAMN02414989 Pre-XDR-TB lineage2.2.1 se
SAMEA2535154 HR-TB lineage2.2.1 None
ERR2446135 Other lineage2.2.1 nl
SAMEA2533646 HR-TB lineage2.2.1 None
SRR2100335 MDR-TB lineage2.2.1 None
SRR2100367 MDR-TB lineage2.2.1 None
SRR2100390 MDR-TB lineage2.2.1 None
ERR4798306 Other lineage2.2.1 in
ERR4797307 Other lineage2.2.1 in
ERR4800488 Other lineage2.2.1 in
SRR6982227 Other lineage4.1.1 None
ERR10465838 HR-TB lineage2.2.1 None
ERR10465963 HR-TB lineage2.2.1 None
ERR1367667 MDR-TB lineage2.2.1 None
ERR117716 MDR-TB lineage2.2.1 None
ERR4821736 HR-TB lineage2.2.1 gb
ERR11043746 Pre-XDR-TB lineage2.2.1 None
ERR114488 MDR-TB lineage2.2.1 None
ERR117735 MDR-TB lineage2.2.1 None
ERR4821221 HR-TB lineage2.2.1 gb
ERR3639710 MDR-TB lineage2.2.1 None
ERR2513260 Other lineage2.2.1 gb
ERR3639764 Pre-XDR-TB lineage2.2.1 None
SRR11662347 MDR-TB lineage2.2.1 None
ERR2514679 HR-TB lineage2.2.1 gb
SRR11662353 MDR-TB lineage2.2.1 None
ERR2514931 Other lineage2.2.1 gb
SRR11662427 MDR-TB lineage2.2.1 None
SRR11662351 MDR-TB lineage2.2.1;La3 None
SRR11662271 Pre-XDR-TB lineage2.2.1 None
SRR11662344 Pre-XDR-TB lineage2.2.1 None
SRR11662261 MDR-TB lineage2.2.1 None
SRR11662269 MDR-TB lineage2.2.1 None
SRR11662237 MDR-TB lineage2.2.1 None
ERR12311961 Other lineage2.2.1 None
SRR21732907 HR-TB lineage2.2.1 None
SRR11662256 MDR-TB lineage2.2.1 None
SRR11662251 MDR-TB lineage2.2.1 None
SRR11662235 MDR-TB lineage2.2.1 None
SRR11662340 MDR-TB lineage2.2.1 None
SRR21733225 HR-TB lineage2.2.1 None
SRR11662682 Pre-XDR-TB lineage2.2.1 None
SRR11662664 MDR-TB lineage2.2.1 None
SRR11662341 MDR-TB lineage2.2.1 None
SRR5184978 MDR-TB lineage2.2.1 None
SRR11662339 MDR-TB lineage2.2.1 None
SRR5184980 MDR-TB lineage2.2.1 None
SRR5184979 MDR-TB lineage2.2.1 None
SRR5184977 MDR-TB lineage2.2.1 None
SRR1595972 MDR-TB lineage2.2.1 None
SRR5184976 MDR-TB lineage2.2.1 None
SRR5184975 MDR-TB lineage2.2.1 None
SRR11662336 MDR-TB lineage2.2.1 None
SRR1595971 MDR-TB lineage2.2.1 None
SRR11662662 MDR-TB lineage2.2.1 None
SRR1564305 MDR-TB lineage2.2.1 None
SRR1595970 MDR-TB lineage2.2.1 None
SRR5184988 MDR-TB lineage2.2.1 None
SRR5184987 MDR-TB lineage2.2.1 None
SRR11662337 MDR-TB lineage2.2.1 None
SRR5184989 XDR-TB lineage2.2.1 None
SRR5184983 MDR-TB lineage2.2.1 None
SRR5184985 MDR-TB lineage2.2.1 None
SRR11662466 MDR-TB lineage2.2.1 None
SRR22251950 HR-TB lineage2.2.1 None
SRR5184984 MDR-TB lineage2.2.1 None
SRR5184986 MDR-TB lineage2.2.1 None
SRR5184982 MDR-TB lineage2.2.1 None
SRR5184981 MDR-TB lineage2.2.1 None
SRR11662630 MDR-TB lineage2.2.1 None
SRR11662654 MDR-TB lineage2.2.1 None
SRR11662442 MDR-TB lineage2.2.1 None
SRR11662453 MDR-TB lineage2.2.1 None
SRR11662359 Pre-XDR-TB lineage2.2.1 None
SRR11662631 MDR-TB lineage2.2.1 None
SRR11662348 Pre-XDR-TB lineage2.2.1 None
SRR11662629 MDR-TB lineage2.2.1 None
SRR11662186 MDR-TB lineage2.2.1 None
SRR11662254 MDR-TB lineage2.2.1 None
SRR11662681 MDR-TB lineage2.2.1 None
SRR11662335 MDR-TB lineage2.2.1 None
SRR11662241 MDR-TB lineage2.2.1 None
SRR11662544 MDR-TB lineage2.2.1 None
SRR11662157 MDR-TB lineage2.2.1 None
SRR11662616 MDR-TB lineage2.2.1 None
SRR11662660 MDR-TB lineage2.2.1 None
SRR11662320 MDR-TB lineage2.2.1 None
SRR11662175 MDR-TB lineage2.2.1 None
SRR11662153 MDR-TB lineage2.2.1 None
SRR11662228 MDR-TB lineage2.2.1 None
SRR11662468 MDR-TB lineage2.2.1 None
SRR11662614 MDR-TB lineage2.2.1 None
SRR11662373 Pre-XDR-TB lineage2.2.1 None
SRR11662641 MDR-TB lineage2.2.1 None
SRR11662646 MDR-TB lineage2.2.1 None
SRR11662645 MDR-TB lineage2.2.1 None
SRR11662639 MDR-TB lineage2.2.1 None
SRR11662653 MDR-TB lineage2.2.1 None
SRR11662652 MDR-TB lineage2.2.1 None
SRR11662651 MDR-TB lineage2.2.1 None
SRR22249474 Other lineage2.2.1 None
SRR11662638 MDR-TB lineage2.2.1 None
SRR11662565 MDR-TB lineage2.2.1 None
SRR11662538 Pre-XDR-TB lineage2.2.1 None
SRR11662564 MDR-TB lineage2.2.1 None
SRR11662244 Pre-XDR-TB lineage2.2.1 None
SRR11662535 MDR-TB lineage2.2.1 None
SRR11662245 MDR-TB lineage2.2.1 None
SRR11662226 Pre-XDR-TB lineage2.2.1 None
SRR11662533 MDR-TB lineage2.2.1 None