Rv3854c - c.672dupG
Drug resistance types
0 Sensitive
0 RR-TB
0 HR-TB
20 MDR-TB
68 Pre-XDR-TB
4 XDR-TB
0 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.3.3 | 32 |
| lineage4.4.1.1 | 13 |
| lineage3 | 8 |
| lineage3.1.2 | 2 |
| lineage2.2.1 | 21 |
| lineage4.2.2 | 1 |
| lineage4 | 2 |
| lineage2.2.2 | 1 |
| lineage2.2.1.1 | 1 |
| lineage4.8 | 8 |
| lineage4.2.2.2 | 1 |
| lineage4.3.2.1 | 1 |
| lineage1.2.2.2;lineage2.2.1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 92 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR12117933 | MDR-TB | lineage4.3.3 | None | SRR26387481 | Pre-XDR-TB | lineage4.3.3 | None | SRR26387478 | Pre-XDR-TB | lineage4.3.3 | None | SRR1062836 | Pre-XDR-TB | lineage4.4.1.1 | None | ERR688026 | MDR-TB | lineage3 | None | SRR29772623 | Pre-XDR-TB | lineage3.1.2 | None | SRR833034 | Pre-XDR-TB | lineage4.4.1.1 | None | ERR13261975 | Pre-XDR-TB | lineage2.2.1 | None | SRR28351520 | Pre-XDR-TB | lineage2.2.1 | None | ERR13266500 | Pre-XDR-TB | lineage2.2.1 | None | SRR1011464 | Pre-XDR-TB | lineage4.4.1.1 | None | SAMN02585966 | Pre-XDR-TB | lineage4.4.1.1 | za | SRR26387500 | Pre-XDR-TB | lineage4.3.3 | None | SRR1172305 | Pre-XDR-TB | lineage2.2.1 | None | SRR3105739 | Pre-XDR-TB | lineage4.2.2 | None | SRR26387463 | Pre-XDR-TB | lineage4.3.3 | None | ERR13267085 | Pre-XDR-TB | lineage2.2.1 | None | SRR1180185 | Pre-XDR-TB | lineage2.2.1 | None | ERR13264983 | MDR-TB | lineage2.2.1 | None | SRR26387461 | Pre-XDR-TB | lineage4.3.3 | None | SRR26387477 | Pre-XDR-TB | lineage4.3.3 | None | SRR28393572 | MDR-TB | lineage4 | None | SRR25827419 | Pre-XDR-TB | lineage3 | None | SRR28351272 | Pre-XDR-TB | lineage2.2.1 | None | ERR2653107 | Pre-XDR-TB | lineage4.3.3 | None | ERR751459 | MDR-TB | lineage4.3.3 | pe | ERR1034594 | MDR-TB | lineage3 | pk | SRR5266543 | Pre-XDR-TB | lineage4.3.3 | ru | SRR21276952 | MDR-TB | lineage2.2.1 | None | SRR25207263 | Pre-XDR-TB | lineage2.2.2 | None | SRR1180314 | Pre-XDR-TB | lineage4.4.1.1 | None | ERR5863694 | Pre-XDR-TB | lineage2.2.1 | None | SRR1174896 | Pre-XDR-TB | lineage2.2.1 | None | SRR25827387 | Pre-XDR-TB | lineage3 | None | SRR833175 | Pre-XDR-TB | lineage4.4.1.1 | None | SRR7652969 | MDR-TB | lineage4.3.3 | None | SRR1180392 | Pre-XDR-TB | lineage4.4.1.1 | None | SRR1181106 | Pre-XDR-TB | lineage4.4.1.1 | None | SRR26387479 | Pre-XDR-TB | lineage4.3.3 | None | ERR13266617 | Pre-XDR-TB | lineage2.2.1.1 | None | ERR12118042 | MDR-TB | lineage4.3.3 | None | SRR29273715 | Pre-XDR-TB | lineage4.8 | None | SRR1166208 | Pre-XDR-TB | lineage4.8 | ro | SRR29274282 | Pre-XDR-TB | lineage4.8 | None | SRR9971343 | Pre-XDR-TB | lineage4.4.1.1 | None | SAMN02350423 | Pre-XDR-TB | lineage4.4.1.1 | za | ERR6865455 | Pre-XDR-TB | lineage4.3.3 | None | ERR13284776 | MDR-TB | lineage3 | None | SRR25207304 | XDR-TB | lineage2.2.1 | None | SRR13870376 | Pre-XDR-TB | lineage4.3.3 | None | ERR4813220 | Pre-XDR-TB | lineage4.3.3 | None | ERR4799874 | Pre-XDR-TB | lineage3.1.2 | in | SRR26387476 | Pre-XDR-TB | lineage4.3.3 | None | SRR29273728 | Pre-XDR-TB | lineage4.8 | None | SRR29289204 | XDR-TB | lineage4.2.2.2 | None | ERR11773713 | MDR-TB | lineage4.8 | None | ERR2516504 | MDR-TB | lineage4.3.3 | pe | ERR2516665 | Pre-XDR-TB | lineage2.2.1 | pe | ERR4813201 | Pre-XDR-TB | lineage4.3.3 | pe | ERR3287451 | MDR-TB | lineage4.3.3 | pe | SRR7341707 | MDR-TB | lineage4.8 | ro | SRR16088050 | Pre-XDR-TB | lineage2.2.1 | None | SRR28393312 | Pre-XDR-TB | lineage2.2.1 | None | SRR8698484 | Pre-XDR-TB | lineage4.3.3 | None | SRR22175197 | Pre-XDR-TB | lineage2.2.1 | None | SAMN02053758 | Pre-XDR-TB | lineage4.4.1.1 | za | ERR11080892 | MDR-TB | lineage3 | None | SRR7592389 | Pre-XDR-TB | lineage4.8 | None | ERR13266504 | Pre-XDR-TB | lineage2.2.1 | None | ERR4024976 | Pre-XDR-TB | lineage4.3.3 | None | SRR24466786 | Pre-XDR-TB | lineage4.8 | None | SRR29772620 | Pre-XDR-TB | lineage4.3.3 | None | SRR28394084 | MDR-TB | lineage4.3.3 | None | SRR26387501 | Pre-XDR-TB | lineage4.3.3 | None | SRR10315584 | Pre-XDR-TB | lineage4.4.1.1 | None | ERR5863693 | Pre-XDR-TB | lineage2.2.1 | None | SRR26387462 | Pre-XDR-TB | lineage4.3.3 | None | SRR15901696 | Pre-XDR-TB | lineage4.3.3 | None | ERR13288990 | MDR-TB | lineage4.3.2.1 | None | SAMN02628527 | Pre-XDR-TB | lineage2.2.1 | ir | SRR1181217 | Pre-XDR-TB | lineage4.4.1.1 | None | SRR11638839 | XDR-TB | lineage3 | None | ERR2510611 | Pre-XDR-TB | lineage3 | pk | SRR1183041 | Pre-XDR-TB | lineage2.2.1 | None | SRR21776297 | Pre-XDR-TB | lineage4.3.3 | None | SRR28393305 | MDR-TB | lineage4.3.3 | None | ERR751411 | MDR-TB | lineage4 | pe | SRR6257020 | Pre-XDR-TB | lineage2.2.1 | None | SRR26387460 | Pre-XDR-TB | lineage4.3.3 | None | SRR25827479 | XDR-TB | lineage1.2.2.2;lineage2.2.1 | None | ERR3287678 | MDR-TB | lineage4.3.3 | pe | ERR5917769 | Pre-XDR-TB | lineage4.3.3 | by |
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