Rv3862c - c.-54A>G
Drug resistance types
157 Sensitive
7 RR-TB
19 HR-TB
55 MDR-TB
32 Pre-XDR-TB
3 XDR-TB
19 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage2.2.1 | 277 |
| La3;lineage2.2.1 | 2 |
| lineage3 | 6 |
| lineage2.2 | 1 |
| lineage2.2.1.1 | 1 |
| lineage2.2.1;lineage4.5 | 2 |
| lineage2.2.1;lineage2.2.2 | 1 |
| lineage1.1.1.1;lineage2.2.1 | 2 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 292 |
Geographic prevalence
Country level data for this variant is available for 78 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR15315888 | Sensitive | lineage2.2.1 | None | SRR17687521 | Sensitive | La3;lineage2.2.1 | None | SRR10808947 | Sensitive | lineage2.2.1 | None | SRR6280167 | Sensitive | lineage2.2.1 | cn | ERR4810992 | Pre-XDR-TB | lineage2.2.1 | cn | ERR4813157 | Pre-XDR-TB | lineage2.2.1 | None | ERR11067340 | Sensitive | lineage3 | None | SRR15368735 | Sensitive | lineage2.2.1 | None | SRR15723177 | Sensitive | lineage2.2.1 | None | ERR4810902 | RR-TB | lineage2.2.1 | None | SRR5067574 | Sensitive | lineage2.2.1 | vn | SRR20969400 | HR-TB | lineage2.2.1 | None | ERR4810566 | Sensitive | lineage2.2.1 | cn | SRR18002930 | MDR-TB | lineage2.2.1 | None | SRR12199441 | HR-TB | lineage2.2.1 | None | SRR15368832 | Sensitive | lineage2.2.1 | None | SRR21732091 | Sensitive | lineage2.2.1 | None | ERR4822329 | Sensitive | lineage2.2.1 | None | ERR11050787 | Sensitive | lineage3 | None | ERR1035124 | Sensitive | lineage2.2.1 | vn | SRR19612355 | Sensitive | lineage2.2.1 | None | SRR25207093 | MDR-TB | lineage2.2.1 | None | SRR18002950 | MDR-TB | lineage2.2.1 | None | SRR15315752 | Other | lineage2.2.1 | None | SRR21732480 | Sensitive | lineage2.2.1 | None | SRR15723249 | Sensitive | lineage2.2.1 | None | SRR5067557 | Sensitive | lineage2.2.1 | vn | SRR12420688 | Sensitive | lineage2.2.1 | None | SRR18911133 | HR-TB | lineage2.2.1 | None | SRR15723056 | Sensitive | lineage2.2.1 | None | SRR25207098 | MDR-TB | lineage2.2.1 | None | SRR21277772 | Sensitive | lineage2.2.1 | None | SRR17688640 | HR-TB | lineage2.2.1 | None | SRR18054797 | MDR-TB | lineage2.2.1 | None | SRR10040198 | MDR-TB | lineage2.2.1 | None | SRR5709900 | Pre-XDR-TB | lineage2.2.1 | th | ERR4831732 | MDR-TB | lineage2.2.1 | vn | SRR5073972 | MDR-TB | lineage2.2.1 | vn | ERR2184564 | Sensitive | lineage2.2.1 | pe | SRR20970016 | Other | lineage2.2 | None | SRR25207002 | Pre-XDR-TB | lineage2.2.1 | None | SRR22251639 | Sensitive | lineage2.2.1 | None | SRR21277794 | Other | lineage2.2.1 | None | SRR5067326 | HR-TB | lineage2.2.1.1 | vn | SRR25515559 | Pre-XDR-TB | lineage2.2.1 | None | SRR27069451 | Pre-XDR-TB | lineage2.2.1 | None | SRR27069402 | Pre-XDR-TB | lineage2.2.1 | None | SRR27069437 | MDR-TB | lineage2.2.1 | None | SRR8651554 | MDR-TB | lineage2.2.1 | cn | SRR29914411 | MDR-TB | lineage2.2.1 | None | SRR25207158 | Pre-XDR-TB | lineage2.2.1 | None | SRR25207157 | Pre-XDR-TB | lineage2.2.1 | None | SRR20632824 | XDR-TB | lineage2.2.1 | None | SRR21658554 | Sensitive | lineage2.2.1 | None | ERR11043948 | Sensitive | lineage3 | None | SRR21728725 | Sensitive | lineage2.2.1 | None | SRR12420357 | Sensitive | lineage2.2.1 | None | SRR25515464 | Pre-XDR-TB | lineage2.2.1 | None | SRR5065226 | Sensitive | lineage2.2.1 | vn | SRR6152820 | Sensitive | lineage2.2.1 | ca | SRR20969483 | Sensitive | lineage2.2.1 | None | SRR15723253 | Sensitive | lineage2.2.1 | None | SRR25207226 | Pre-XDR-TB | lineage2.2.1 | None | SRR25207309 | Pre-XDR-TB | lineage2.2.1 | None | SRR20632777 | XDR-TB | lineage2.2.1 | None | SRR17712106 | HR-TB | lineage2.2.1 | None | SRR26399527 | Sensitive | lineage2.2.1 | None | SRR25207097 | MDR-TB | lineage2.2.1 | None | SRR10808913 | Sensitive | lineage2.2.1 | None | SRR18912553 | Sensitive | lineage2.2.1 | None | ERR4810794 | Pre-XDR-TB | lineage2.2.1 | cn | SRR15723202 | MDR-TB | lineage2.2.1 | None | SRR20632800 | RR-TB | lineage2.2.1 | None | SRR6152890 | Other | lineage2.2.1 | ca | ERR4811299 | MDR-TB | lineage2.2.1 | cn | ERR4195612 | Sensitive | lineage2.2.1 | None | SRR20969874 | HR-TB | lineage2.2.1 | None | ERR11050890 | Sensitive | lineage3 | None | ERR4811202 | Sensitive | lineage2.2.1 | cn | ERR552976 | Sensitive | lineage2.2.1 | de | SRR20969750 | Sensitive | lineage2.2.1;lineage4.5 | None | SRR6153051 | Sensitive | lineage2.2.1 | ca | SRR14519101 | Sensitive | lineage2.2.1 | None | SRR12420768 | MDR-TB | lineage2.2.1 | None | DRR188951 | Sensitive | lineage2.2.1 | None | DRR130210 | MDR-TB | lineage2.2.1 | None | SRR2024981 | MDR-TB | lineage2.2.1 | cn | SRR20969837 | Sensitive | lineage2.2.1 | None | SRR25206907 | Pre-XDR-TB | lineage2.2.1 | None | ERR4811543 | Sensitive | lineage2.2.1 | cn | SRR5067374 | HR-TB | lineage2.2.1;lineage2.2.2 | vn | SRR10040369 | MDR-TB | lineage2.2.1 | None | ERR4830305 | Sensitive | lineage2.2.1 | vn | SRR11662596 | MDR-TB | lineage2.2.1 | None | DRR130164 | Pre-XDR-TB | lineage2.2.1 | None | ERR4811548 | Sensitive | lineage2.2.1 | cn | SRR5067319 | Sensitive | lineage2.2.1 | vn | ERR502937 | MDR-TB | lineage2.2.1 | None | SRR21733368 | Sensitive | lineage2.2.1 | None | ERR031476 | Sensitive | lineage2.2.1 | None | ERR7339129 | Sensitive | lineage2.2.1 | None | SRR21279419 | HR-TB | lineage2.2.1 | None | SRR1723829 | Sensitive | lineage2.2.1 | None | SRR5067590 | Sensitive | lineage2.2.1 | vn | SRR12420665 | Sensitive | lineage2.2.1 | None | ERR11043969 | Sensitive | lineage3 | None | SRR5067403 | Sensitive | lineage2.2.1 | vn | SRR10305992 | MDR-TB | lineage2.2.1 | None | SRR15316008 | Sensitive | lineage2.2.1 | None | ERR4810470 | MDR-TB | lineage2.2.1 | cn | ERR270627 | Sensitive | lineage2.2.1 | None | ERR4828275 | Sensitive | lineage2.2.1 | None | ERR551106 | Sensitive | lineage2.2.1 | de | DRR188670 | HR-TB | lineage2.2.1 | None | SRR5073933 | HR-TB | lineage2.2.1 | vn | SRR21291134 | Sensitive | lineage2.2.1 | None | SRR23316629 | HR-TB | lineage2.2.1 | None | SRR16089683 | Sensitive | lineage2.2.1 | None | ERR6866735 | Other | lineage2.2.1 | None | SRR21277441 | Sensitive | lineage2.2.1 | None | SRR6280332 | Sensitive | lineage2.2.1 | cn | ERR4810866 | Pre-XDR-TB | lineage2.2.1 | cn | SRR21576730 | RR-TB | lineage2.2.1 | None | DRR261161 | Sensitive | lineage2.2.1 | None | SRR16370692 | MDR-TB | lineage2.2.1 | None | ERR7911515 | Other | lineage2.2.1 | vn | SRR26112532 | Sensitive | lineage2.2.1 | None | ERR4811278 | RR-TB | lineage2.2.1 | cn | ERR11043228 | Sensitive | lineage2.2.1 | None | SRR5065354 | Sensitive | lineage2.2.1 | vn | ERR9119412 | Sensitive | lineage2.2.1 | None | SRR25389531 | MDR-TB | lineage2.2.1 | None | SRR21677934 | Other | lineage2.2.1 | None | SRR21031721 | Sensitive | lineage2.2.1 | None | SRR25515728 | Sensitive | lineage2.2.1 | None | SRR15315782 | Sensitive | lineage2.2.1 | None | SRR22251550 | HR-TB | lineage2.2.1 | None | SRR3724756 | Sensitive | lineage2.2.1 | None | SRR10305711 | Sensitive | lineage2.2.1 | None | ERR4828208 | Sensitive | lineage1.1.1.1;lineage2.2.1 | vn | ERR751725 | Other | lineage2.2.1 | th | SRR18511644 | Sensitive | lineage2.2.1 | None | SRR25515436 | Pre-XDR-TB | lineage2.2.1 | None | SRR27069382 | Pre-XDR-TB | lineage2.2.1 | None | SRR27069404 | Pre-XDR-TB | lineage2.2.1 | None | SRR27069401 | MDR-TB | lineage2.2.1 | None | ERR4831135 | Sensitive | lineage2.2.1 | de | ERR13289416 | HR-TB | lineage2.2.1 | None | SRR29914415 | Pre-XDR-TB | lineage2.2.1 | None | ERR4811316 | MDR-TB | lineage2.2.1 | cn | SRR6824571 | MDR-TB | lineage2.2.1 | cn | SRR25207001 | Pre-XDR-TB | lineage2.2.1 | None | ERR234100 | Sensitive | lineage2.2.1 | cn | ERR4830424 | Sensitive | lineage2.2.1 | vn | SRR1723828 | RR-TB | lineage2.2.1 | cn | SRR5067499 | Sensitive | lineage2.2.1 | vn | SRR20632806 | XDR-TB | lineage2.2.1 | None | SRR21277244 | Sensitive | lineage2.2.1 | None | ERR7911169 | MDR-TB | lineage2.2.1 | vn | SRR25515558 | Pre-XDR-TB | lineage2.2.1 | None | SRR22251468 | HR-TB | lineage2.2.1 | None | ERR4828180 | Sensitive | lineage2.2.1 | vn | SRR15723159 | Sensitive | lineage2.2.1 | None | SRR15368845 | Sensitive | lineage2.2.1 | None | ERR4810469 | MDR-TB | lineage2.2.1 | cn | SRR5073815 | Sensitive | lineage2.2.1 | vn | ERR4811076 | Sensitive | lineage2.2.1;lineage4.5 | cn | SRR21277425 | Sensitive | lineage2.2.1 | None | ERR11082016 | Sensitive | lineage3 | None | SRR15368985 | Sensitive | lineage2.2.1 | None | SRR18500612 | Sensitive | lineage2.2.1 | None | SRR20969911 | Sensitive | lineage2.2.1 | None | ERR4810691 | Sensitive | lineage2.2.1 | cn | SRR25207390 | Pre-XDR-TB | lineage2.2.1 | None | SRR22251858 | Sensitive | lineage2.2.1 | None | SRR15316439 | Other | lineage2.2.1 | None | SRR10040382 | Pre-XDR-TB | lineage2.2.1 | None | DRR188743 | MDR-TB | lineage2.2.1 | None | SRR12142401 | Sensitive | lineage2.2.1 | None | SRR12420417 | Sensitive | lineage2.2.1 | None | SRR20969390 | MDR-TB | lineage2.2.1 | None | SRR21277669 | Other | lineage2.2.1 | None | SRR15316163 | Sensitive | lineage2.2.1 | None | SRR15315828 | MDR-TB | lineage2.2.1 | None | SRR22249915 | Sensitive | lineage2.2.1 | None | SRR25207298 | Pre-XDR-TB | lineage2.2.1 | None | SRR5067413 | Other | lineage2.2.1 | vn | ERR718484 | Other | lineage2.2.1 | th | SRR10040220 | MDR-TB | lineage2.2.1 | None | ERR4828270 | Sensitive | lineage2.2.1 | vn | SRR21291163 | Sensitive | lineage2.2.1 | None | SRR17712082 | Sensitive | lineage2.2.1 | None | ERR553387 | Sensitive | lineage2.2.1 | de | ERR4810907 | Sensitive | lineage2.2.1 | cn | SRR10040380 | MDR-TB | lineage2.2.1 | None | SRR20970029 | Sensitive | lineage2.2.1 | None | SRR15316389 | Sensitive | lineage2.2.1 | None | SRR25206930 | MDR-TB | lineage2.2.1 | None | SRR15315889 | Other | lineage2.2.1 | None | SRR10040375 | Pre-XDR-TB | lineage2.2.1 | None | SRR10305712 | Sensitive | lineage2.2.1 | None | SRR15368861 | Sensitive | lineage2.2.1 | None | SRR15316057 | Sensitive | lineage2.2.1 | None | SRR671814 | Sensitive | lineage2.2.1 | cn | SRR25389426 | MDR-TB | lineage2.2.1 | None | SRR6824514 | Sensitive | lineage2.2.1 | cn | SRR25534145 | Sensitive | lineage2.2.1 | None | SRR25207367 | MDR-TB | lineage2.2.1 | None | SRR25206948 | MDR-TB | lineage2.2.1 | None | SRR26400031 | Sensitive | lineage1.1.1.1;lineage2.2.1 | None | DRR034532 | HR-TB | lineage2.2.1 | None | SRR5073681 | Other | lineage2.2.1 | vn | SRR8237320 | Sensitive | lineage2.2.1 | np | SRR12142375 | MDR-TB | lineage2.2.1 | None | SRR671735 | MDR-TB | lineage2.2.1 | cn | SRR21277763 | Sensitive | lineage2.2.1 | None | SRR16115027 | HR-TB | lineage2.2.1 | None | SRR26400100 | Sensitive | lineage2.2.1 | None | SRR20970059 | Sensitive | lineage2.2.1 | None | SRR15316027 | Sensitive | lineage2.2.1 | None | SRR25207185 | MDR-TB | lineage2.2.1 | None | SRR15315827 | MDR-TB | lineage2.2.1 | None | SRR21277224 | Sensitive | lineage2.2.1 | None | ERR502936 | RR-TB | lineage2.2.1 | None | ERR4830442 | Sensitive | lineage2.2.1 | vn | SRR25206956 | Pre-XDR-TB | lineage2.2.1 | None | SRR2024984 | MDR-TB | lineage2.2.1 | cn | SRR10040260 | MDR-TB | lineage2.2.1 | None | SRR20969898 | MDR-TB | lineage2.2.1 | None | ERR2513391 | Sensitive | lineage2.2.1 | gb | ERR9121738 | Sensitive | lineage2.2.1 | None | SRR27069379 | MDR-TB | lineage2.2.1 | None | SRR25207388 | Pre-XDR-TB | lineage2.2.1 | None | SRR27069374 | Pre-XDR-TB | lineage2.2.1 | None | SRR27069460 | MDR-TB | lineage2.2.1 | None | SRR27069459 | MDR-TB | lineage2.2.1 | None | SRR27069435 | MDR-TB | lineage2.2.1 | None | SRR29126501 | Sensitive | lineage2.2.1 | None | SRR29440598 | Sensitive | lineage2.2.1 | None | SRR29126561 | Sensitive | lineage2.2.1 | None | SRR30182692 | Sensitive | lineage2.2.1 | None | SRR1723831 | HR-TB | lineage2.2.1 | cn | ERR2184594 | Sensitive | lineage2.2.1 | pe | SRR22250208 | Sensitive | lineage2.2.1 | None | DRR034501 | Sensitive | lineage2.2.1 | None | SRR26399505 | Sensitive | lineage2.2.1 | None | SRR1723830 | Sensitive | lineage2.2.1 | cn | SRR25207000 | MDR-TB | lineage2.2.1 | None | SRR6480522 | Sensitive | lineage2.2.1 | None | SRR15316467 | Sensitive | lineage2.2.1 | None | ERR752091 | Sensitive | lineage2.2.1 | th | SRR26399781 | Sensitive | lineage2.2.1 | None | SRR26400103 | Sensitive | lineage2.2.1 | None | SRR15369044 | Sensitive | lineage2.2.1 | None | DRR474124 | Sensitive | lineage2.2.1 | None | SRR18495622 | Sensitive | lineage2.2.1 | None | ERR4810953 | MDR-TB | lineage2.2.1 | cn | ERR502915 | Sensitive | lineage2.2.1 | None | SRR15316293 | Sensitive | lineage2.2.1 | None | SRR25206909 | Pre-XDR-TB | lineage2.2.1 | None | SRR15723057 | Sensitive | lineage2.2.1 | None | SRR15723026 | Sensitive | lineage2.2.1 | None | SRR21711106 | Other | lineage2.2.1 | None | SRR6280163 | Sensitive | lineage2.2.1 | cn | ERR234253 | Sensitive | lineage2.2.1 | us | SRR21277035 | Other | lineage2.2.1 | None | SRR18500610 | Sensitive | lineage2.2.1 | None | SRR15315961 | HR-TB | lineage2.2.1 | None | ERR4810690 | Sensitive | lineage2.2.1 | cn | SRR12420409 | Sensitive | lineage2.2.1 | None | ERR6866941 | Sensitive | lineage2.2.1 | None | ERR031453 | Sensitive | lineage2.2.1 | None | SRR1723833 | Sensitive | lineage2.2.1 | cn | SRR15316006 | Sensitive | lineage2.2.1 | None | ERR502893 | Pre-XDR-TB | lineage2.2.1 | None | ERR4810474 | MDR-TB | lineage2.2.1 | cn | ERR4828303 | Other | lineage2.2.1 | vn | SRR19612244 | Other | lineage2.2.1 | None | SRR5067351 | Sensitive | lineage2.2.1 | vn | SRR21689987 | Sensitive | lineage2.2.1 | None | ERR4810837 | Other | lineage2.2.1 | cn | ERR9119428 | Sensitive | lineage2.2.1 | None | SRR26399992 | Sensitive | lineage2.2.1 | None | SRR671743 | MDR-TB | lineage2.2.1 | cn | SRR17787485 | Sensitive | La3;lineage2.2.1 | None | SRR10040160 | MDR-TB | lineage2.2.1 | None | ERR6866942 | Sensitive | lineage2.2.1 | None | ERR9119319 | Sensitive | lineage2.2.1 | None | SRR12420455 | RR-TB | lineage2.2.1 | None | SRR10828199 | Pre-XDR-TB | lineage2.2.1 | None | SRR21887684 | MDR-TB | lineage2.2.1 | None | SRR21732319 | Sensitive | lineage2.2.1 | None |
|---|
