Rv3862c - c.-54A>G
Drug resistance types
174 Sensitive
7 RR-TB
22 HR-TB
56 MDR-TB
32 Pre-XDR-TB
3 XDR-TB
22 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage2.2.1 | 300 |
| La3;lineage2.2.1 | 2 |
| lineage3 | 6 |
| lineage1.1.1.1;lineage2.2.1 | 3 |
| lineage2.2 | 1 |
| lineage2.2.1.1 | 1 |
| lineage2.2.1;lineage4.5 | 2 |
| lineage2.2.1;lineage2.2.2 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 316 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Variant Proportion
Hover over a Country 0–0.1
0.1–0.2
0.2–0.3
0.3–0.4
0.4–0.5
0.5–0.6
0.6–0.8
0.8+
0.1–0.2
0.2–0.3
0.3–0.4
0.4–0.5
0.5–0.6
0.6–0.8
0.8+
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 |
|---|---|---|---|
| SRR21576730 | RR-TB | lineage2.2.1 | None |
| SRR25515436 | Pre-XDR-TB | lineage2.2.1 | None |
| ERR13291405 | Sensitive | lineage2.2.1 | None |
| SRR29126561 | Sensitive | lineage2.2.1 | None |
| ERR9119319 | Sensitive | lineage2.2.1 | None |
| SRR28859786 | Sensitive | lineage2.2.1 | None |
| ERR4830305 | Sensitive | lineage2.2.1 | vn |
| SRR10040220 | MDR-TB | lineage2.2.1 | None |
| SRR21887684 | MDR-TB | lineage2.2.1 | None |
| SRR29051066 | Sensitive | lineage2.2.1 | None |
| SRR17687521 | Sensitive | La3;lineage2.2.1 | None |
| SRR6280167 | Sensitive | lineage2.2.1 | cn |
| SRR29017270 | Sensitive | lineage2.2.1 | None |
| SRR15723177 | Sensitive | lineage2.2.1 | None |
| SRR15316027 | Sensitive | lineage2.2.1 | None |
| SRR20970029 | Sensitive | lineage2.2.1 | None |
| SRR21658554 | Sensitive | lineage2.2.1 | None |
| SRR18054797 | MDR-TB | lineage2.2.1 | None |
| SRR18495622 | Sensitive | lineage2.2.1 | None |
| SRR25206930 | MDR-TB | lineage2.2.1 | None |
| ERR4810907 | Sensitive | lineage2.2.1 | cn |
| ERR4811316 | MDR-TB | lineage2.2.1 | cn |
| SRR6280332 | Sensitive | lineage2.2.1 | cn |
| SRR21732091 | Sensitive | lineage2.2.1 | None |
| SRR10305712 | Sensitive | lineage2.2.1 | None |
| SRR10305992 | MDR-TB | lineage2.2.1 | None |
| ERR11082016 | Sensitive | lineage3 | None |
| SRR15315782 | Sensitive | lineage2.2.1 | None |
| SRR15316389 | Sensitive | lineage2.2.1 | None |
| SRR15368735 | Sensitive | lineage2.2.1 | None |
| DRR188670 | HR-TB | lineage2.2.1 | None |
| ERR4828208 | Sensitive | lineage1.1.1.1;lineage2.2.1 | vn |
| SRR19612355 | Sensitive | lineage2.2.1 | None |
| SRR29914415 | Pre-XDR-TB | lineage2.2.1 | None |
| SRR12142375 | MDR-TB | lineage2.2.1 | None |
| ERR4828180 | Sensitive | lineage2.2.1 | vn |
| ERR4828303 | Other | lineage2.2.1 | vn |
| SRR25207158 | Pre-XDR-TB | lineage2.2.1 | None |
| SRR671735 | MDR-TB | lineage2.2.1 | cn |
| SRR23316622 | HR-TB | lineage2.2.1 | None |
| SRR15315888 | Sensitive | lineage2.2.1 | None |
| ERR4811299 | MDR-TB | lineage2.2.1 | cn |
| SRR16115027 | HR-TB | lineage2.2.1 | None |
| SRR23316629 | HR-TB | lineage2.2.1 | None |
| SRR25389426 | MDR-TB | lineage2.2.1 | None |
| SRR18002950 | MDR-TB | lineage2.2.1 | None |
| SRR16089683 | Sensitive | lineage2.2.1 | None |
| ERR6866735 | Other | lineage2.2.1 | None |
| SRR25207390 | Pre-XDR-TB | lineage2.2.1 | None |
| SRR5067557 | Sensitive | lineage2.2.1 | vn |
| ERR13248738 | MDR-TB | lineage2.2.1 | None |
| ERR4810866 | Pre-XDR-TB | lineage2.2.1 | cn |
| SRR25207185 | MDR-TB | lineage2.2.1 | None |
| ERR4810469 | MDR-TB | lineage2.2.1 | cn |
| ERR4810794 | Pre-XDR-TB | lineage2.2.1 | cn |
| SRR21277035 | Other | lineage2.2.1 | None |
| SRR26112532 | Sensitive | lineage2.2.1 | None |
| ERR6866941 | Sensitive | lineage2.2.1 | None |
| SRR25207093 | MDR-TB | lineage2.2.1 | None |
| SRR27069435 | MDR-TB | lineage2.2.1 | None |
| SRR12420665 | Sensitive | lineage2.2.1 | None |
| ERR4830442 | Sensitive | lineage2.2.1 | vn |
| SRR15315752 | Other | lineage2.2.1 | None |
| SRR25206956 | Pre-XDR-TB | lineage2.2.1 | None |
| SRR21031721 | Sensitive | lineage2.2.1 | None |
| SRR3724756 | Sensitive | lineage2.2.1 | None |
| ERR2513391 | Sensitive | lineage2.2.1 | gb |
| ERR9121738 | Sensitive | lineage2.2.1 | None |
| SRR20970016 | Other | lineage2.2 | None |
| SRR25207002 | Pre-XDR-TB | lineage2.2.1 | None |
| SRR22251639 | Sensitive | lineage2.2.1 | None |
| ERR751725 | Other | lineage2.2.1 | th |
| SRR18511644 | Sensitive | lineage2.2.1 | None |
| SRR17787485 | Sensitive | La3;lineage2.2.1 | None |
| SRR6152820 | Sensitive | lineage2.2.1 | ca |
| ERR752091 | Sensitive | lineage2.2.1 | th |
| SRR21277441 | Sensitive | lineage2.2.1 | None |
| SRR27069374 | Pre-XDR-TB | lineage2.2.1 | None |
| SRR6280163 | Sensitive | lineage2.2.1 | cn |
| SRR27069437 | MDR-TB | lineage2.2.1 | None |
| ERR7911515 | Other | lineage2.2.1 | vn |
| ERR502937 | MDR-TB | lineage2.2.1 | None |
| ERR502893 | Pre-XDR-TB | lineage2.2.1 | None |
| ERR4830424 | Sensitive | lineage2.2.1 | vn |
| ERR502936 | RR-TB | lineage2.2.1 | None |
| SRR10040160 | MDR-TB | lineage2.2.1 | None |
| SRR25515464 | Pre-XDR-TB | lineage2.2.1 | None |
| SRR27069459 | MDR-TB | lineage2.2.1 | None |
| ERR9119412 | Sensitive | lineage2.2.1 | None |
| SRR15315828 | MDR-TB | lineage2.2.1 | None |
| SRR21277794 | Other | lineage2.2.1 | None |
| ERR4811278 | RR-TB | lineage2.2.1 | cn |
| SRR6824571 | MDR-TB | lineage2.2.1 | cn |
| SRR15316057 | Sensitive | lineage2.2.1 | None |
| ERR552976 | Sensitive | lineage2.2.1 | de |
| ERR11050787 | Sensitive | lineage3 | None |
| SRR5065354 | Sensitive | lineage2.2.1 | vn |
| SRR5065226 | Sensitive | lineage2.2.1 | vn |
| ERR4810992 | Pre-XDR-TB | lineage2.2.1 | cn |
| SRR21732480 | Sensitive | lineage2.2.1 | None |
| SRR15315827 | MDR-TB | lineage2.2.1 | None |
| SRR29055966 | Sensitive | lineage2.2.1 | None |
| SRR18002930 | MDR-TB | lineage2.2.1 | None |
| SRR25534145 | Sensitive | lineage2.2.1 | None |
| SRR25389531 | MDR-TB | lineage2.2.1 | None |
| SRR25206948 | MDR-TB | lineage2.2.1 | None |
| SRR20969390 | MDR-TB | lineage2.2.1 | None |
| SRR20969874 | HR-TB | lineage2.2.1 | None |
| ERR7339129 | Sensitive | lineage2.2.1 | None |
| ERR031453 | Sensitive | lineage2.2.1 | None |
| SRR15723249 | Sensitive | lineage2.2.1 | None |
| SRR20632824 | XDR-TB | lineage2.2.1 | None |
| ERR4810902 | RR-TB | lineage2.2.1 | None |
| ERR031476 | Sensitive | lineage2.2.1 | None |
| DRR474124 | Sensitive | lineage2.2.1 | None |
| SRR5067319 | Sensitive | lineage2.2.1 | vn |
| SRR21733368 | Sensitive | lineage2.2.1 | None |
| SRR25207001 | Pre-XDR-TB | lineage2.2.1 | None |
| ERR11043948 | Sensitive | lineage3 | None |
| ERR4822329 | Sensitive | lineage2.2.1 | None |
| SRR1723830 | Sensitive | lineage2.2.1 | cn |
| SRR25207000 | MDR-TB | lineage2.2.1 | None |
| SRR25207098 | MDR-TB | lineage2.2.1 | None |
| SRR15369044 | Sensitive | lineage2.2.1 | None |
| SRR20970059 | Sensitive | lineage2.2.1 | None |
| ERR4811202 | Sensitive | lineage2.2.1 | cn |
| SRR12420357 | Sensitive | lineage2.2.1 | None |
| SRR25206909 | Pre-XDR-TB | lineage2.2.1 | None |
| SRR10040369 | MDR-TB | lineage2.2.1 | None |
| SRR15368985 | Sensitive | lineage2.2.1 | None |
| SRR15723253 | Sensitive | lineage2.2.1 | None |
| SRR15723026 | Sensitive | lineage2.2.1 | None |
| SRR26400100 | Sensitive | lineage2.2.1 | None |
| SRR12142401 | Sensitive | lineage2.2.1 | None |
| SRR17712082 | Sensitive | lineage2.2.1 | None |
| ERR234253 | Sensitive | lineage2.2.1 | us |
| SRR25207226 | Pre-XDR-TB | lineage2.2.1 | None |
| SRR5067326 | HR-TB | lineage2.2.1.1 | vn |
| SRR26399505 | Sensitive | lineage2.2.1 | None |
| SRR15723159 | Sensitive | lineage2.2.1 | None |
| SRR20632777 | XDR-TB | lineage2.2.1 | None |
| SRR5073815 | Sensitive | lineage2.2.1 | vn |
| SRR6824514 | Sensitive | lineage2.2.1 | cn |
| SRR17712106 | HR-TB | lineage2.2.1 | None |
| ERR4811076 | Sensitive | lineage2.2.1;lineage4.5 | cn |
| DRR034532 | HR-TB | lineage2.2.1 | None |
| SRR12420409 | Sensitive | lineage2.2.1 | None |
| SRR5073933 | HR-TB | lineage2.2.1 | vn |
| SRR26399527 | Sensitive | lineage2.2.1 | None |
| SRR25207097 | MDR-TB | lineage2.2.1 | None |
| SRR1723833 | Sensitive | lineage2.2.1 | cn |
| SRR15316006 | Sensitive | lineage2.2.1 | None |
| SRR29096811 | Other | lineage2.2.1 | None |
| SRR27069451 | Pre-XDR-TB | lineage2.2.1 | None |
| SRR21277425 | Sensitive | lineage2.2.1 | None |
| ERR4831732 | MDR-TB | lineage2.2.1 | vn |
| SRR20969911 | Sensitive | lineage2.2.1 | None |
| SRR15723202 | MDR-TB | lineage2.2.1 | None |
| ERR4810474 | MDR-TB | lineage2.2.1 | cn |
| SRR5065334 | Sensitive | lineage2.2.1 | vn |
| ERR4810691 | Sensitive | lineage2.2.1 | cn |
| ERR1035124 | Sensitive | lineage2.2.1 | vn |
| SRR5067351 | Sensitive | lineage2.2.1 | vn |
| SRR15316163 | Sensitive | lineage2.2.1 | None |
| SRR22251858 | Sensitive | lineage2.2.1 | None |
| SRR29017501 | Sensitive | lineage1.1.1.1;lineage2.2.1 | None |
| ERR4811543 | Sensitive | lineage2.2.1 | cn |
| ERR11050890 | Sensitive | lineage3 | None |
| SRR18500610 | Sensitive | lineage2.2.1 | None |
| SRR10040382 | Pre-XDR-TB | lineage2.2.1 | None |
| DRR188743 | MDR-TB | lineage2.2.1 | None |
| ERR4810837 | Other | lineage2.2.1 | cn |
| SRR21277772 | Sensitive | lineage2.2.1 | None |
| SRR12420768 | MDR-TB | lineage2.2.1 | None |
| DRR188951 | Sensitive | lineage2.2.1 | None |
| SRR671743 | MDR-TB | lineage2.2.1 | cn |
| SRR12420417 | Sensitive | lineage2.2.1 | None |
| SRR29440598 | Sensitive | lineage2.2.1 | None |
| DRR130210 | MDR-TB | lineage2.2.1 | None |
| SRR29050957 | Other | lineage2.2.1 | None |
| SRR26400031 | Sensitive | lineage1.1.1.1;lineage2.2.1 | None |
| SRR26400103 | Sensitive | lineage2.2.1 | None |
| SRR21675431 | Sensitive | lineage2.2.1 | None |
| SRR26399992 | Sensitive | lineage2.2.1 | None |
| SRR25206907 | Pre-XDR-TB | lineage2.2.1 | None |
| SRR15316293 | Sensitive | lineage2.2.1 | None |
| SRR25207298 | Pre-XDR-TB | lineage2.2.1 | None |
| ERR4828270 | Sensitive | lineage2.2.1 | vn |
| SRR10305711 | Sensitive | lineage2.2.1 | None |
| SRR21277763 | Sensitive | lineage2.2.1 | None |
| SRR5073972 | MDR-TB | lineage2.2.1 | vn |
| SRR21291163 | Sensitive | lineage2.2.1 | None |
| SRR10808947 | Sensitive | lineage2.2.1 | None |
| DRR130164 | Pre-XDR-TB | lineage2.2.1 | None |
| ERR4811548 | Sensitive | lineage2.2.1 | cn |
| ERR4813157 | Pre-XDR-TB | lineage2.2.1 | None |
| ERR11067340 | Sensitive | lineage3 | None |
| SRR10040380 | MDR-TB | lineage2.2.1 | None |
| SRR6480522 | Sensitive | lineage2.2.1 | None |
| SRR11662596 | MDR-TB | lineage2.2.1 | None |
| SRR19612244 | Other | lineage2.2.1 | None |
| SRR21279419 | HR-TB | lineage2.2.1 | None |
| SRR12199441 | HR-TB | lineage2.2.1 | None |
| SRR15368832 | Sensitive | lineage2.2.1 | None |
| SRR21291134 | Sensitive | lineage2.2.1 | None |
| ERR270627 | Sensitive | lineage2.2.1 | None |
| SRR25207157 | Pre-XDR-TB | lineage2.2.1 | None |
| SRR29017300 | Sensitive | lineage2.2.1 | None |
| SRR21711106 | Other | lineage2.2.1 | None |
| SRR26399504 | Sensitive | lineage2.2.1 | None |
| SRR29914411 | MDR-TB | lineage2.2.1 | None |
| SRR22250208 | Sensitive | lineage2.2.1 | None |
| SRR10040375 | Pre-XDR-TB | lineage2.2.1 | None |
| SRR5067237 | Sensitive | lineage2.2.1 | vn |
| SRR5067590 | Sensitive | lineage2.2.1 | vn |
| ERR11043969 | Sensitive | lineage3 | None |
| SRR25207388 | Pre-XDR-TB | lineage2.2.1 | None |
| SRR5067403 | Sensitive | lineage2.2.1 | vn |
| SRR15316008 | Sensitive | lineage2.2.1 | None |
| ERR4810470 | MDR-TB | lineage2.2.1 | cn |
| SRR21728721 | HR-TB | lineage2.2.1 | None |
| SRR671814 | Sensitive | lineage2.2.1 | cn |
| SRR22251550 | HR-TB | lineage2.2.1 | None |
| ERR4828275 | Sensitive | lineage2.2.1 | None |
| SRR25207367 | MDR-TB | lineage2.2.1 | None |
| ERR4831135 | Sensitive | lineage2.2.1 | de |
| SRR8237320 | Sensitive | lineage2.2.1 | np |
| ERR13292259 | HR-TB | lineage2.2.1 | None |
| SRR10040198 | MDR-TB | lineage2.2.1 | None |
| SRR10808913 | Sensitive | lineage2.2.1 | None |
| SRR10828199 | Pre-XDR-TB | lineage2.2.1 | None |
| SRR26399681 | Sensitive | lineage2.2.1 | None |
| SRR12420455 | RR-TB | lineage2.2.1 | None |
| SRR27069460 | MDR-TB | lineage2.2.1 | None |
| SRR27069404 | Pre-XDR-TB | lineage2.2.1 | None |
| SRR5067499 | Sensitive | lineage2.2.1 | vn |
| SRR12420688 | Sensitive | lineage2.2.1 | None |
| SRR18911133 | HR-TB | lineage2.2.1 | None |
| SRR15723056 | Sensitive | lineage2.2.1 | None |
| SRR27069379 | MDR-TB | lineage2.2.1 | None |
| SRR15315961 | HR-TB | lineage2.2.1 | None |
| DRR261161 | Sensitive | lineage2.2.1 | None |
| ERR234269 | Sensitive | lineage2.2.1 | us |
| SRR17688640 | HR-TB | lineage2.2.1 | None |
| SRR14519122 | Sensitive | lineage2.2.1 | None |
| SRR5709900 | Pre-XDR-TB | lineage2.2.1 | th |
| SRR21677934 | Other | lineage2.2.1 | None |
| SRR10040260 | MDR-TB | lineage2.2.1 | None |
| SRR25515728 | Sensitive | lineage2.2.1 | None |
| SRR20969898 | MDR-TB | lineage2.2.1 | None |
| ERR4195612 | Sensitive | lineage2.2.1 | None |
| DRR034501 | Sensitive | lineage2.2.1 | None |
| ERR2184564 | Sensitive | lineage2.2.1 | pe |
| SRR15723057 | Sensitive | lineage2.2.1 | None |
| SRR25515558 | Pre-XDR-TB | lineage2.2.1 | None |
| SRR27069382 | Pre-XDR-TB | lineage2.2.1 | None |
| SRR21277669 | Other | lineage2.2.1 | None |
| ERR718484 | Other | lineage2.2.1 | th |
| SRR25515559 | Pre-XDR-TB | lineage2.2.1 | None |
| SRR6152890 | Other | lineage2.2.1 | ca |
| ERR502915 | Sensitive | lineage2.2.1 | None |
| SRR5067374 | HR-TB | lineage2.2.1;lineage2.2.2 | vn |
| SRR5067413 | Other | lineage2.2.1 | vn |
| SRR5067574 | Sensitive | lineage2.2.1 | vn |
| SRR27069402 | Pre-XDR-TB | lineage2.2.1 | None |
| SRR6152830 | Sensitive | lineage2.2.1 | ca |
| SRR6153051 | Sensitive | lineage2.2.1 | ca |
| SRR8651554 | MDR-TB | lineage2.2.1 | cn |
| ERR7911169 | MDR-TB | lineage2.2.1 | vn |
| SRR2024984 | MDR-TB | lineage2.2.1 | cn |
| SRR2024981 | MDR-TB | lineage2.2.1 | cn |
| SRR16370692 | MDR-TB | lineage2.2.1 | None |
| SRR20969400 | HR-TB | lineage2.2.1 | None |
| SRR26399781 | Sensitive | lineage2.2.1 | None |
| SRR15316467 | Sensitive | lineage2.2.1 | None |
| ERR551106 | Sensitive | lineage2.2.1 | de |
| ERR553387 | Sensitive | lineage2.2.1 | de |
| SRR21277224 | Sensitive | lineage2.2.1 | None |
| SRR20632806 | XDR-TB | lineage2.2.1 | None |
| SRR15316439 | Other | lineage2.2.1 | None |
| SRR1723828 | RR-TB | lineage2.2.1 | cn |
| SRR29053195 | Sensitive | lineage2.2.1 | None |
| ERR234100 | Sensitive | lineage2.2.1 | cn |
| SRR29053401 | Other | lineage2.2.1 | None |
| SRR30182692 | Sensitive | lineage2.2.1 | None |
| SRR21732319 | Sensitive | lineage2.2.1 | None |
| ERR2184594 | Sensitive | lineage2.2.1 | pe |
| ERR11043228 | Sensitive | lineage2.2.1 | None |
| ERR4810566 | Sensitive | lineage2.2.1 | cn |
| SRR27069401 | MDR-TB | lineage2.2.1 | None |
| SRR1723829 | Sensitive | lineage2.2.1 | None |
| ERR9119428 | Sensitive | lineage2.2.1 | None |
| ERR6866942 | Sensitive | lineage2.2.1 | None |
| SRR21728725 | Sensitive | lineage2.2.1 | None |
| SRR21277244 | Sensitive | lineage2.2.1 | None |
| SRR18912553 | Sensitive | lineage2.2.1 | None |
| ERR4810953 | MDR-TB | lineage2.2.1 | cn |
| SRR22251468 | HR-TB | lineage2.2.1 | None |
| SRR15368861 | Sensitive | lineage2.2.1 | None |
| SRR20969483 | Sensitive | lineage2.2.1 | None |
| SRR20632800 | RR-TB | lineage2.2.1 | None |
| SRR18500612 | Sensitive | lineage2.2.1 | None |
| SRR25207309 | Pre-XDR-TB | lineage2.2.1 | None |
| SRR15368845 | Sensitive | lineage2.2.1 | None |
| ERR4810690 | Sensitive | lineage2.2.1 | cn |
| SRR1723831 | HR-TB | lineage2.2.1 | cn |
| ERR13292414 | Sensitive | lineage2.2.1 | None |
| SRR5073681 | Other | lineage2.2.1 | vn |
| SRR29126501 | Sensitive | lineage2.2.1 | None |
| SRR21689987 | Sensitive | lineage2.2.1 | None |
| SRR15315889 | Other | lineage2.2.1 | None |
| ERR13289416 | HR-TB | lineage2.2.1 | None |
| SRR20969837 | Sensitive | lineage2.2.1 | None |
| SRR20969750 | Sensitive | lineage2.2.1;lineage4.5 | None |
| SRR14519101 | Sensitive | lineage2.2.1 | None |
| SRR22249915 | Sensitive | lineage2.2.1 | None |
