Run ID: SRR1723829
Sample name:
Date: 18-08-2022 08:13:58
Number of reads: 3802820
Percentage reads mapped: 94.53
Strain: lineage2.2.1
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage2 | East-Asian | Beijing | RD105 | 1.0 |
lineage2.2 | East-Asian (Beijing) | Beijing-RD207 | RD105;RD207 | 1.0 |
lineage2.2.1 | East-Asian (Beijing) | Beijing-RD181 | RD105;RD207;RD181 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
fgd1 | 491742 | c.960T>C | synonymous_variant | 1.0 |
mshA | 575907 | p.Ala187Val | missense_variant | 1.0 |
rpoC | 763031 | c.-339T>C | upstream_gene_variant | 1.0 |
rpoC | 767314 | p.Tyr1315* | stop_gained | 0.23 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1472742 | n.897C>T | non_coding_transcript_exon_variant | 0.11 |
rrs | 1472754 | n.909G>T | non_coding_transcript_exon_variant | 0.21 |
rrs | 1472781 | n.936C>T | non_coding_transcript_exon_variant | 0.24 |
rrs | 1472793 | n.948A>T | non_coding_transcript_exon_variant | 0.18 |
rrs | 1473177 | n.1332G>A | non_coding_transcript_exon_variant | 0.1 |
rrs | 1473202 | n.1357C>T | non_coding_transcript_exon_variant | 0.1 |
rrs | 1473205 | n.1360T>C | non_coding_transcript_exon_variant | 0.11 |
rrl | 1475803 | n.2146T>C | non_coding_transcript_exon_variant | 0.13 |
rrl | 1475804 | n.2147G>C | non_coding_transcript_exon_variant | 0.13 |
rrl | 1475816 | n.2159C>G | non_coding_transcript_exon_variant | 0.17 |
rrl | 1475817 | n.2160A>G | non_coding_transcript_exon_variant | 0.17 |
rrl | 1476442 | n.2785T>A | non_coding_transcript_exon_variant | 0.17 |
rrl | 1476443 | n.2786G>T | non_coding_transcript_exon_variant | 0.17 |
rrl | 1476455 | n.2798C>A | non_coding_transcript_exon_variant | 0.17 |
rrl | 1476456 | n.2799A>T | non_coding_transcript_exon_variant | 0.16 |
rrl | 1476463 | n.2806C>A | non_coding_transcript_exon_variant | 0.16 |
rrl | 1476466 | n.2809C>T | non_coding_transcript_exon_variant | 0.16 |
rpsA | 1834177 | c.636A>C | synonymous_variant | 1.0 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
katG | 2154724 | p.Arg463Leu | missense_variant | 1.0 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embA | 4243460 | c.228C>T | synonymous_variant | 1.0 |
ubiA | 4269944 | c.-111G>A | upstream_gene_variant | 0.33 |
gid | 4407588 | c.615A>G | synonymous_variant | 1.0 |
gid | 4407927 | p.Glu92Asp | missense_variant | 1.0 |