Rv3862c - c.-75_-73delGCTinsCC
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
49 Sensitive
2 RR-TB
12 HR-TB
41 MDR-TB
29 Pre-XDR-TB
5 XDR-TB
1 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.1.1;lineage4.3.2 | 1 |
| lineage2.2.1 | 38 |
| lineage4.4.1.1 | 7 |
| lineage2.2.1;lineage4.1.1.3 | 1 |
| lineage3 | 5 |
| lineage4.9 | 4 |
| lineage4.1.2.1 | 4 |
| lineage4.4.1.2 | 2 |
| lineage4.3.3 | 19 |
| lineage2.2.1.1 | 7 |
| lineage4.1.1.3.1 | 2 |
| lineage1.1.1 | 1 |
| lineage2.2.2 | 3 |
| lineage2.2.1;lineage4 | 1 |
| lineage3.1.1 | 2 |
| lineage4.8 | 5 |
| La1.3;lineage2.2.1 | 1 |
| lineage2.2.1;lineage4.5 | 1 |
| lineage2.2.1;lineage4.4.2 | 2 |
| lineage4.5 | 4 |
| lineage4.1.1.3 | 2 |
| lineage4.3.4.2 | 1 |
| lineage4.3.4.2.1 | 2 |
| lineage4.1.2 | 4 |
| lineage4.2.1 | 2 |
| lineage4.4.2 | 2 |
| lineage4.1.2.1;lineage4.3.4.1 | 1 |
| lineage4.3.2 | 4 |
| lineage4.3.2.1 | 2 |
| lineage4.6.1.1 | 2 |
| lineage1.1.3.2;lineage4.3.4.2.1 | 1 |
| lineage4.1.2.1;lineage4.3.1 | 1 |
| lineage4.1.2.1;lineage4.3.2 | 1 |
| lineage4.3.1 | 2 |
| lineage2.2.1.2 | 1 |
| lineage4.1.1.1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 139 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR22528561 | Sensitive | lineage4.1.1;lineage4.3.2 | None | SRR24256362 | Pre-XDR-TB | lineage2.2.1 | None | SRR24256362 | Pre-XDR-TB | lineage2.2.1 | None | ERR3063109 | Sensitive | lineage4.4.1.1 | None | ERR3063110 | Sensitive | lineage4.4.1.1 | None | SRR7653022 | MDR-TB | lineage2.2.1 | None | ERR13266441 | XDR-TB | lineage2.2.1;lineage4.1.1.3 | None | ERR13266420 | Pre-XDR-TB | lineage2.2.1 | None | SRR24222908 | Sensitive | lineage3 | None | SRR24222908 | Sensitive | lineage3 | None | SRR17567898 | Sensitive | lineage4.9 | None | ERR4814050 | Sensitive | lineage4.1.2.1 | br | SRR28046262 | Sensitive | lineage4.4.1.2 | None | SRR28046262 | Sensitive | lineage4.4.1.2 | None | ERR4831826 | MDR-TB | lineage2.2.1 | vn | ERR4829017 | HR-TB | lineage4.1.2.1 | None | ERR4812995 | MDR-TB | lineage4.3.3 | None | ERR4830696 | Sensitive | lineage4.1.2.1 | dz | SRR21277842 | HR-TB | lineage2.2.1.1 | None | SRR6046673 | HR-TB | lineage4.1.1.3.1 | gb | ERR10868185 | Pre-XDR-TB | lineage2.2.1 | None | ERR13290103 | HR-TB | lineage4.1.1.3.1 | None | DRR184614 | Sensitive | lineage1.1.1 | vn | SRR5065361 | HR-TB | lineage2.2.1 | vn | SRR24256115 | MDR-TB | lineage4.3.3 | None | SRR24256115 | MDR-TB | lineage4.3.3 | None | SRR6824612 | MDR-TB | lineage2.2.1 | cn | SRR6824612 | MDR-TB | lineage2.2.1 | cn | SRR15368806 | HR-TB | lineage2.2.1.1 | None | SRR14782308 | Sensitive | lineage4.3.3 | None | SRR14782308 | Sensitive | lineage4.3.3 | None | ERR13289363 | MDR-TB | lineage2.2.2 | None | ERR12916913 | XDR-TB | lineage4.3.3 | None | SRR13232655 | MDR-TB | lineage2.2.1;lineage4 | None | ERR7737794 | MDR-TB | lineage3.1.1 | None | ERR7737794 | MDR-TB | lineage3.1.1 | None | SRR16156805 | Pre-XDR-TB | lineage2.2.1.1 | None | SRR16156805 | Pre-XDR-TB | lineage2.2.1.1 | None | ERR3063106 | Sensitive | lineage4.4.1.1 | None | SRR28239801 | HR-TB | lineage4.8 | None | SRR29385477 | Pre-XDR-TB | La1.3;lineage2.2.1 | None | ERR13290620 | Pre-XDR-TB | lineage2.2.1 | None | SRR29538984 | MDR-TB | lineage2.2.1 | None | SRR14782090 | HR-TB | lineage4.3.3 | None | SRR29772620 | Pre-XDR-TB | lineage4.3.3 | None | ERR13290848 | Pre-XDR-TB | lineage2.2.1;lineage4.5 | None | SRR25207356 | Pre-XDR-TB | lineage2.2.1 | None | SRR10808922 | HR-TB | lineage2.2.1;lineage4.4.2 | None | SRR10808922 | HR-TB | lineage2.2.1;lineage4.4.2 | None | SRR26936942 | Pre-XDR-TB | lineage2.2.1.1 | None | SRR26936942 | Pre-XDR-TB | lineage2.2.1.1 | None | SRR21240212 | Sensitive | lineage4.3.3 | None | SRR29914411 | MDR-TB | lineage2.2.1 | None | SRR11972432 | MDR-TB | lineage2.2.1 | None | SRR6785279 | MDR-TB | lineage4.3.3 | None | SRR16087891 | MDR-TB | lineage2.2.1 | None | SRR16087891 | MDR-TB | lineage2.2.1 | None | SRR25206900 | MDR-TB | lineage4.5 | None | ERR13260381 | MDR-TB | lineage4.1.1.3 | None | SRR6982465 | Sensitive | lineage4.3.4.2 | None | ERR181741 | Sensitive | lineage4.3.4.2.1 | mw | ERR3148225 | MDR-TB | lineage4.1.2 | mx | ERR212041 | Sensitive | lineage4.3.4.2.1 | mw | ERR3148185 | MDR-TB | lineage4.1.2.1 | mx | ERR2864285 | MDR-TB | lineage4.1.1.3 | pt | SRR28351398 | XDR-TB | lineage4.2.1 | None | SRR27069406 | Pre-XDR-TB | lineage4.4.2 | None | SRR27069406 | Pre-XDR-TB | lineage4.4.2 | None | ERR718299 | Sensitive | lineage2.2.1 | th | ERR1034680 | Pre-XDR-TB | lineage4.1.2.1;lineage4.3.4.1 | co | ERR751561 | MDR-TB | lineage4.3.2 | pe | ERR11775565 | Sensitive | lineage4.3.2.1 | None | SRR1173835 | Sensitive | lineage4.6.1.1 | None | SRR14802072 | Sensitive | lineage2.2.1 | None | ERR144621 | Sensitive | lineage4.3.3 | ru | ERR181813 | Sensitive | lineage1.1.3.2;lineage4.3.4.2.1 | mw | ERR12117933 | MDR-TB | lineage4.3.3 | None | SRR16962461 | Sensitive | lineage4.8 | None | SRR28394229 | MDR-TB | lineage4.3.3 | None | ERR5865532 | MDR-TB | lineage4.2.1 | None | ERR11551983 | MDR-TB | lineage4.1.2.1;lineage4.3.1 | None | ERR10748576 | MDR-TB | lineage4.3.3 | None | SRR1162812 | Pre-XDR-TB | lineage2.2.1 | None | SRR29356609 | Sensitive | lineage3 | None | ERR11243579 | MDR-TB | lineage2.2.1 | None | ERR108146 | Sensitive | lineage4.3.2.1 | za | SRR12420638 | RR-TB | lineage2.2.1 | None | SRR12420638 | RR-TB | lineage2.2.1 | None | ERR13266614 | Sensitive | lineage3 | None | SRR10397136 | Pre-XDR-TB | lineage2.2.1 | None | SRR10397136 | Pre-XDR-TB | lineage2.2.1 | None | SRR29051205 | MDR-TB | lineage4.1.2 | None | ERR6866848 | Sensitive | lineage4.1.2.1;lineage4.3.2 | None | ERR5864660 | Pre-XDR-TB | lineage2.2.1 | None | ERR5864660 | Pre-XDR-TB | lineage2.2.1 | None | SRR10040530 | MDR-TB | lineage4.5 | None | SRR10040530 | MDR-TB | lineage4.5 | None | ERR8774473 | Sensitive | lineage4.3.3 | None | ERR8774473 | Sensitive | lineage4.3.3 | None | SRR3082101 | MDR-TB | lineage4.3.1 | None | SRR3082101 | MDR-TB | lineage4.3.1 | None | ERR13290621 | Pre-XDR-TB | lineage2.2.1 | None | SRR28498395 | MDR-TB | lineage2.2.1 | None | ERR13290619 | Pre-XDR-TB | lineage2.2.1 | None | SRR25207015 | Pre-XDR-TB | lineage2.2.1.2 | None | ERR3063108 | Sensitive | lineage4.4.1.1 | None | ERR3063108 | Sensitive | lineage4.4.1.1 | None | ERR403246 | Sensitive | lineage2.2.2 | None | ERR403246 | Sensitive | lineage2.2.2 | None | ERR14708078 | Pre-XDR-TB | lineage4.9 | None | ERR14708082 | Pre-XDR-TB | lineage4.9 | None | ERR14708081 | Pre-XDR-TB | lineage4.9 | None | SAMN02567683 | Sensitive | lineage4.6.1.1 | ug | ERR4809086 | Sensitive | lineage4.1.1.1 | za | SRR28045438 | Sensitive | lineage3 | None | ERR4814012 | Sensitive | lineage4.3.3 | br | ERR4832010 | HR-TB | lineage2.2.1 | vn | ERR2206047 | Sensitive | lineage4.3.2 | None | SRR6824479 | MDR-TB | lineage4.5 | cn | SRR12931727 | Sensitive | lineage4.3.3 | None | SRR5067638 | Other | lineage2.2.1.1 | vn | SRR5073936 | Sensitive | lineage2.2.1 | vn | ERR4820996 | Sensitive | lineage4.3.2 | None | ERR4820996 | Sensitive | lineage4.3.2 | None | SRR25827540 | XDR-TB | lineage2.2.1 | None | SRR25827540 | XDR-TB | lineage2.2.1 | None | SRR13583369 | MDR-TB | lineage4.1.2 | None | SRR13583369 | MDR-TB | lineage4.1.2 | None | ERR8774475 | Sensitive | lineage4.3.3 | None | SRR19304007 | Sensitive | lineage4.8 | None | SRR21887674 | MDR-TB | lineage2.2.1 | None | SRR21887674 | MDR-TB | lineage2.2.1 | None | SRR10397130 | Pre-XDR-TB | lineage2.2.1 | None | SRR29273602 | MDR-TB | lineage4.8 | None | ERR11067573 | Sensitive | lineage4.8 | None | ERR3063107 | Sensitive | lineage4.4.1.1 | None | ERR3063107 | Sensitive | lineage4.4.1.1 | None | ERR13290618 | Pre-XDR-TB | lineage2.2.1 | None | ERR13439882 | HR-TB | lineage2.2.1 | None |
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