Rv3862c - c.-79T>G
Drug resistance types
63 Sensitive
6 RR-TB
14 HR-TB
40 MDR-TB
26 Pre-XDR-TB
2 XDR-TB
5 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage2.2.1 | 39 |
| lineage3 | 6 |
| lineage4.3.3 | 18 |
| lineage4.8 | 9 |
| lineage4.1.2.1 | 9 |
| lineage4.3.4.2 | 3 |
| lineage2.2.1.1 | 4 |
| lineage2.2.2 | 3 |
| lineage4.5 | 2 |
| lineage4.7 | 1 |
| lineage4.6 | 1 |
| lineage3.1.2.1 | 2 |
| lineage3;lineage2.2.1 | 1 |
| lineage4.6.1.1 | 2 |
| lineage4.1.1.1 | 1 |
| lineage4.3.1 | 1 |
| lineage4 | 2 |
| lineage4.4.2 | 3 |
| lineage4.1 | 1 |
| lineage4.1.1.3 | 2 |
| lineage4.9 | 2 |
| lineage4.3.2 | 31 |
| lineage4.3.4.1 | 4 |
| lineage4.3.4 | 1 |
| lineage4.1.3 | 1 |
| lineage4.3 | 2 |
| lineage4.3.4.2.1 | 2 |
| lineage4.6.1.2 | 1 |
| lineage2.1 | 2 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 156 |
Geographic prevalence
Country level data for this variant is available for 45 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR11972350 | MDR-TB | lineage2.2.1 | None | SRR12142417 | Pre-XDR-TB | lineage2.2.1 | None | SRR12882774 | MDR-TB | lineage3 | None | SRR16370337 | Sensitive | lineage4.3.3 | None | ERR11050596 | Sensitive | lineage4.8 | None | SRR15399222 | Other | lineage4.1.2.1 | None | SRR16370539 | MDR-TB | lineage2.2.1 | None | SRR16370546 | MDR-TB | lineage2.2.1 | None | SRR19325680 | Sensitive | lineage4.3.3 | None | SRR18911588 | Sensitive | lineage4.3.4.2 | None | SRR18911913 | Sensitive | lineage4.3.3 | None | SRR18715111 | Pre-XDR-TB | lineage4.8 | None | SRR20632826 | Pre-XDR-TB | lineage2.2.1 | None | SRR25827367 | MDR-TB | lineage2.2.1.1 | None | SRR20969764 | Other | lineage2.2.1 | None | SRR20969892 | MDR-TB | lineage2.2.2 | None | SRR26112829 | Sensitive | lineage2.2.1 | None | SRR25206909 | Pre-XDR-TB | lineage2.2.1 | None | SRR25207309 | Pre-XDR-TB | lineage2.2.1 | None | SRR21277370 | Sensitive | lineage4.5 | None | ERR11082819 | MDR-TB | lineage4.8 | None | SRR21658527 | Sensitive | lineage2.2.1 | None | SRR21676928 | Sensitive | lineage4.1.2.1 | None | SRR22048415 | Sensitive | lineage4.7 | None | ERR11050961 | Sensitive | lineage4.6 | None | SRR23861859 | Sensitive | lineage4.3.3 | None | SRR23862168 | Sensitive | lineage4.3.3 | None | SRR22251139 | Sensitive | lineage4.8 | None | SRR24256316 | MDR-TB | lineage4.3.3 | None | SRR21732980 | Other | lineage4.3.3 | None | SRR24223029 | HR-TB | lineage4.3.3 | None | SRR25340852 | Sensitive | lineage3.1.2.1 | None | SRR25827665 | Pre-XDR-TB | lineage3;lineage2.2.1 | None | ERR1035276 | MDR-TB | lineage4.3.3 | br | SRR1723792 | MDR-TB | lineage2.2.1 | cn | ERR2513895 | Sensitive | lineage4.8 | None | ERR1035163 | Sensitive | lineage4.3.3 | sa | SRR5152915 | Sensitive | lineage4.8 | None | ERR1199043 | Sensitive | lineage4.6.1.1 | ug | ERR8699147 | Sensitive | lineage4.1.1.1 | None | SRR6824403 | MDR-TB | lineage2.2.1 | cn | ERR3014597 | MDR-TB | lineage4.3.1 | tn | ERR2184327 | Sensitive | lineage4 | None | SRR5067384 | HR-TB | lineage4.4.2 | vn | ERR7911326 | MDR-TB | lineage2.2.1 | vn | SRR5153907 | MDR-TB | lineage4.1 | None | ERR7911334 | MDR-TB | lineage2.2.1 | vn | ERR2707126 | MDR-TB | lineage4.1.1.3 | cd | ERR2707006 | MDR-TB | lineage4.9 | cd | SRR2100385 | MDR-TB | lineage3 | None | ERR2707155 | MDR-TB | lineage4.9 | cd | ERR779867 | HR-TB | lineage4.3.2 | pe | ERR2679272 | HR-TB | lineage4.1.2.1 | None | ERR1199014 | Sensitive | lineage4.6.1.1 | ug | ERR067708 | Sensitive | lineage4.8 | ru | ERR4799150 | HR-TB | lineage3 | in | ERR2677430 | MDR-TB | lineage2.2.1 | de | ERR4831071 | MDR-TB | lineage3 | np | ERR2179755 | HR-TB | lineage4.4.2 | cn | ERR3148200 | MDR-TB | lineage4.3.4.2 | mx | ERR4831131 | Sensitive | lineage4.1.2.1 | de | ERR4831414 | MDR-TB | lineage2.2.1 | de | ERR4811125 | Sensitive | lineage4.5 | cn | ERR2516520 | Sensitive | lineage4.3.2 | pe | ERR2516464 | MDR-TB | lineage4.1.2.1 | pe | ERR3256134 | MDR-TB | lineage4.3.4.1 | ph | ERR4796823 | MDR-TB | lineage2.2.1.1 | in | ERR4828988 | RR-TB | lineage4.3.4.2 | None | ERR4830980 | MDR-TB | lineage3.1.2.1 | np | ERR4822326 | MDR-TB | lineage2.2.1 | de | ERR4811889 | Sensitive | lineage4.3.2 | pe | ERR4800394 | Pre-XDR-TB | lineage2.2.1.1 | in | ERR4811860 | Sensitive | lineage4.3.2 | pe | ERR4829811 | Sensitive | lineage4.8 | it | ERR5917742 | HR-TB | lineage4.8 | by | ERR4811673 | Sensitive | lineage4.3.2 | pe | ERR2510130 | HR-TB | lineage4.3.2 | pe | ERR4815077 | Other | lineage2.2.1.1 | gb | ERR4813434 | HR-TB | lineage4.3.4 | pe | ERR4812392 | Sensitive | lineage4.3.2 | pe | ERR3132168 | MDR-TB | lineage4.3.2 | None | ERR2184354 | Pre-XDR-TB | lineage4.3.2 | pe | ERR2184555 | Sensitive | lineage4.3.2 | pe | SRR7276714 | Sensitive | lineage4.3.4.1 | None | SRR7276685 | Sensitive | lineage4.3.4.1 | None | SRR8651633 | Pre-XDR-TB | lineage4.4.2 | None | SRR7516312 | Pre-XDR-TB | lineage2.2.1 | None | ERR11044066 | RR-TB | lineage2.2.1 | None | SRR9224924 | MDR-TB | lineage4.3.3 | None | ERR4818768 | MDR-TB | lineage4.3.3 | gb | ERR10680116 | MDR-TB | lineage4.1.3 | None | ERR11044120 | Sensitive | lineage4.3.2 | None | ERR1213919 | MDR-TB | lineage4.3 | None | ERR11044121 | Sensitive | lineage4.3.2 | None | ERR11044383 | Sensitive | lineage4.3.2 | None | ERR11044513 | Sensitive | lineage4.3.2 | None | ERR117734 | MDR-TB | lineage3 | None | ERR4024771 | Sensitive | lineage4.3.2 | None | ERR2513240 | MDR-TB | lineage2.2.1 | gb | ERR4011937 | Sensitive | lineage4.3.4.2.1 | None | ERR4011987 | Sensitive | lineage4.3.4.2.1 | None | ERR4024942 | Sensitive | lineage4.3.3 | None | ERR4024865 | Sensitive | lineage4.3.2 | None | ERR4024782 | Sensitive | lineage4.3.2 | None | ERR4800152 | HR-TB | lineage3 | None | ERR4025148 | Sensitive | lineage4.3.2 | None | ERR133985 | HR-TB | lineage4.3.3 | ru | ERR4195267 | Sensitive | lineage4.3.3 | None | ERR4195406 | HR-TB | lineage4.3.2 | None | ERR8975635 | HR-TB | lineage4.1.1.3 | None | ERR4813966 | MDR-TB | lineage4.3.4.1 | br | ERR4812084 | Sensitive | lineage4.3 | None | ERR5864858 | Pre-XDR-TB | lineage2.2.1 | None | ERR5864849 | Pre-XDR-TB | lineage2.2.1 | None | ERR5864855 | Pre-XDR-TB | lineage2.2.1 | None | ERR5864853 | Pre-XDR-TB | lineage2.2.1 | None | ERR5864854 | Pre-XDR-TB | lineage2.2.1 | None | ERR5864857 | Pre-XDR-TB | lineage2.2.1 | None | ERR5864856 | Pre-XDR-TB | lineage2.2.1 | None | ERR5864859 | Pre-XDR-TB | lineage2.2.1 | None | ERR5864850 | Pre-XDR-TB | lineage2.2.1 | None | ERR5864851 | Pre-XDR-TB | lineage2.2.1 | None | ERR5864852 | Pre-XDR-TB | lineage2.2.1 | None | ERR5864860 | Pre-XDR-TB | lineage2.2.1 | None | ERR5864907 | Pre-XDR-TB | lineage2.2.1 | None | ERR6865959 | Sensitive | lineage4.3.2 | None | ERR6358773 | MDR-TB | lineage4.6.1.2 | None | ERR6865330 | Sensitive | lineage4.3.3 | None | ERR6865409 | Sensitive | lineage4.3.2 | None | ERR6865803 | Sensitive | lineage4.3.2 | None | ERR6866644 | Sensitive | lineage4.3.2 | None | ERR6866117 | Sensitive | lineage4.3.2 | None | ERR6865983 | Sensitive | lineage4.3.2 | None | SRR16088503 | Sensitive | lineage4.3.3 | None | ERR6866684 | Sensitive | lineage4.3.2 | None | ERR6866876 | Other | lineage4.1.2.1 | None | ERR6866933 | Sensitive | lineage4.3.2 | None | ERR6866762 | Sensitive | lineage4.3.2 | None | SRR22250208 | Sensitive | lineage2.2.1 | None | SRR27241220 | MDR-TB | lineage2.2.1 | None | ERR970451 | RR-TB | lineage4.1.2.1 | None | SRR11662326 | Pre-XDR-TB | lineage2.1 | None | SRR11662436 | MDR-TB | lineage2.2.1 | None | ERR972799 | RR-TB | lineage4.1.2.1 | None | ERR9121690 | Sensitive | lineage4.3.3 | None | ERR9121743 | HR-TB | lineage4.3.2 | None | ERR970452 | RR-TB | lineage4.1.2.1 | None | SRR10185946 | Pre-XDR-TB | lineage2.1 | None | ERR9993004 | XDR-TB | lineage2.2.2 | None | ERR9993005 | XDR-TB | lineage2.2.2 | None | SRR10808957 | Sensitive | lineage4.3.2 | None | SRR10305747 | RR-TB | lineage2.2.1 | None | SRR10305778 | Sensitive | lineage2.2.1 | None | SRR10808670 | Pre-XDR-TB | lineage4.3.2 | None | SRR10808699 | Sensitive | lineage4 | None | SRR10305980 | MDR-TB | lineage2.2.1 | None |
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