Rv3862c - c.49A>C
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
57 Sensitive
3 RR-TB
10 HR-TB
58 MDR-TB
64 Pre-XDR-TB
0 XDR-TB
13 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage2.2.1 | 111 |
| lineage2.2.2 | 11 |
| lineage4.8 | 11 |
| lineage4.3.4.1 | 3 |
| lineage4.2.2.2 | 3 |
| lineage3 | 4 |
| lineage4.1.2.1 | 10 |
| lineage4.3.4.2 | 5 |
| lineage2.2.1;lineage4.7 | 4 |
| lineage4.4.1.1 | 2 |
| lineage4 | 4 |
| lineage4.4.2 | 1 |
| lineage2.2.1.1 | 7 |
| lineage4.6.1.1 | 1 |
| lineage4.6.2.2 | 3 |
| lineage4.5 | 3 |
| lineage2.2.1;lineage4.3.3 | 1 |
| lineage4.3.3 | 6 |
| lineage4.1.2 | 3 |
| lineage4.9 | 1 |
| lineage4.1.2.1;lineage4.8 | 1 |
| lineage3.1.1 | 1 |
| lineage4.1.4 | 1 |
| lineage4.2.1 | 2 |
| lineage2.2.1;lineage4 | 1 |
| lineage4.1.1.1 | 1 |
| lineage2.2.1.2 | 1 |
| lineage2.2.1;lineage4.2.1 | 1 |
| lineage1.1.2 | 2 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 205 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR28045498 | Sensitive | lineage2.2.1 | None | ERR495022 | Other | lineage2.2.2 | None | SRR28646085 | RR-TB | lineage4.8 | None | SRR7069291 | Sensitive | lineage4.8 | None | ERR11466295 | Sensitive | lineage4.3.4.1 | None | SRR1723619 | Pre-XDR-TB | lineage2.2.1 | cn | SRR1723538 | MDR-TB | lineage2.2.1 | cn | SRR29093241 | Pre-XDR-TB | lineage2.2.2 | None | SRR29978525 | Pre-XDR-TB | lineage2.2.1 | None | ERR12117980 | Pre-XDR-TB | lineage2.2.1 | None | ERR7737882 | MDR-TB | lineage4.2.2.2 | None | SRR29097063 | Sensitive | lineage3 | None | ERR1633791 | Other | lineage2.2.2 | za | SRR6484957 | Sensitive | lineage4.8 | None | ERR13260339 | MDR-TB | lineage4.1.2.1 | None | ERR13261340 | Sensitive | lineage2.2.1 | None | SRR10869305 | Sensitive | lineage4.8 | None | SRR14802246 | Sensitive | lineage4.8 | None | SRR21657636 | Sensitive | lineage4.3.4.2 | None | ERR13248589 | Sensitive | lineage2.2.2 | None | ERR13260669 | Pre-XDR-TB | lineage2.2.1 | None | ERR9029917 | Pre-XDR-TB | lineage2.2.1;lineage4.7 | None | ERR13260379 | Other | lineage4.1.2.1 | None | SRR7653001 | MDR-TB | lineage2.2.1 | None | ERR11082841 | MDR-TB | lineage4.4.1.1 | None | ERR13291189 | Other | lineage2.2.1 | None | ERR4553987 | MDR-TB | lineage2.2.1 | None | ERR13265697 | MDR-TB | lineage2.2.1 | None | SRR21690377 | Sensitive | lineage4 | None | ERR13260616 | Pre-XDR-TB | lineage4.1.2.1 | None | ERR13260684 | MDR-TB | lineage2.2.1 | None | SRR29385263 | MDR-TB | lineage4.4.2 | None | SRR25207228 | MDR-TB | lineage2.2.1 | None | SRR29094463 | Pre-XDR-TB | lineage2.2.1 | None | ERR4800183 | Sensitive | lineage3 | None | SRR29356702 | MDR-TB | lineage2.2.1 | None | SRR26112462 | Other | lineage2.2.1 | None | ERR4813153 | MDR-TB | lineage2.2.1 | None | SRR29053547 | Sensitive | lineage4.3.4.2 | None | ERR13267064 | Pre-XDR-TB | lineage2.2.1 | None | SRR29056115 | Sensitive | lineage2.2.1.1 | None | SRR29093675 | Sensitive | lineage4.8 | None | SRR26399198 | Sensitive | lineage2.2.1 | None | ERR13260329 | MDR-TB | lineage4.1.2.1 | None | SRR28044418 | Sensitive | lineage3 | None | SRR29978523 | MDR-TB | lineage2.2.1 | None | ERR4798124 | Pre-XDR-TB | lineage2.2.1 | in | SRR10040340 | MDR-TB | lineage2.2.1 | None | ERR4797794 | MDR-TB | lineage2.2.1 | in | ERR4798715 | Pre-XDR-TB | lineage2.2.1 | in | ERR6358722 | MDR-TB | lineage4.6.1.1 | None | ERR4813574 | Pre-XDR-TB | lineage2.2.1 | None | SRR13870366 | Pre-XDR-TB | lineage2.2.1 | None | ERR9119221 | Sensitive | lineage2.2.1 | None | ERR13260191 | MDR-TB | lineage2.2.1 | None | SRR28385876 | Pre-XDR-TB | lineage2.2.2 | None | SRR28385882 | MDR-TB | lineage2.2.2 | None | SRR28385881 | MDR-TB | lineage2.2.2 | None | ERR11044606 | MDR-TB | lineage4.6.2.2 | None | ERR4813175 | Pre-XDR-TB | lineage2.2.1 | pe | ERR4813214 | MDR-TB | lineage2.2.1 | pe | ERR2184216 | Sensitive | lineage4 | pe | ERR4810926 | MDR-TB | lineage2.2.1 | cn | ERR4810989 | MDR-TB | lineage2.2.1 | cn | ERR4811368 | Pre-XDR-TB | lineage4.5 | cn | ERR3287837 | Pre-XDR-TB | lineage2.2.1 | pe | SRR25207211 | Pre-XDR-TB | lineage4.5 | None | ERR4822588 | Pre-XDR-TB | lineage2.2.1 | tm | ERR4830268 | Sensitive | lineage2.2.1 | vn | ERR4812705 | Pre-XDR-TB | lineage2.2.1 | pe | ERR4830209 | Sensitive | lineage2.2.1 | vn | SRR29772616 | Pre-XDR-TB | lineage2.2.1 | None | ERR4813042 | Pre-XDR-TB | lineage2.2.1 | pe | ERR4830591 | MDR-TB | lineage2.2.1 | tm | ERR4830586 | Pre-XDR-TB | lineage2.2.1 | tm | ERR4813067 | Pre-XDR-TB | lineage4.1.2.1 | pe | ERR4813155 | Pre-XDR-TB | lineage2.2.1 | pe | ERR4830621 | MDR-TB | lineage2.2.1 | tm | ERR4813170 | Pre-XDR-TB | lineage2.2.1 | pe | ERR4813180 | Pre-XDR-TB | lineage2.2.1;lineage4.3.3 | pe | ERR751623 | MDR-TB | lineage4.3.3 | pe | ERR4813351 | Pre-XDR-TB | lineage2.2.1 | None | SRR10305996 | MDR-TB | lineage2.2.1 | None | SRR10808400 | Pre-XDR-TB | lineage2.2.1;lineage4.7 | None | SRR18054810 | MDR-TB | lineage2.2.1 | None | SRR13870426 | Pre-XDR-TB | lineage2.2.1 | None | SAMEA2533546 | HR-TB | lineage2.2.1 | uz | ERR4817450 | Sensitive | lineage4.6.2.2 | gb | SRR6824379 | Pre-XDR-TB | lineage2.2.1 | cn | SRR6824694 | MDR-TB | lineage2.2.1 | cn | SRR14718673 | Other | lineage4.1.2 | None | SRR21277791 | Sensitive | lineage2.2.1.1 | None | SRR11972345 | MDR-TB | lineage2.2.1.1 | None | SRR19320530 | Sensitive | lineage4.3.4.2 | None | ERR11049630 | Sensitive | lineage4.2.2.2 | None | ERR1034711 | MDR-TB | lineage4.1.2.1 | pe | SRR25207257 | Pre-XDR-TB | lineage2.2.1 | None | ERR4024907 | Pre-XDR-TB | lineage2.2.1 | None | ERR13276058 | Sensitive | lineage4.8 | None | DRR188726 | Sensitive | lineage2.2.2 | None | ERR6866374 | Sensitive | lineage4.3.3 | None | SRR7131166 | Sensitive | lineage4.9 | None | SRR23340035 | Pre-XDR-TB | lineage4.3.3 | None | SRR28646074 | RR-TB | lineage4.8 | None | ERR12117996 | Pre-XDR-TB | lineage2.2.1 | None | SRR26399945 | Sensitive | lineage2.2.1 | None | ERR550893_ERR550892 | HR-TB | lineage2.2.1 | None | ERR3287741 | MDR-TB | lineage2.2.1 | pe | ERR4812905 | MDR-TB | lineage2.2.1 | pe | ERR4813162 | Pre-XDR-TB | lineage2.2.1 | pe | ERR4813398 | MDR-TB | lineage2.2.1 | pe | ERR9119242 | Sensitive | lineage2.2.1 | None | SRR15316133 | Sensitive | lineage2.2.1.1 | None | SRR28393388 | MDR-TB | lineage4.3.4.1 | None | SRR10380172 | Sensitive | lineage4.1.2.1;lineage4.8 | None | SAMEA104362086 | Pre-XDR-TB | lineage2.2.1;lineage4.7 | None | SRR29052959 | Sensitive | lineage4.3.4.2 | None | SRR13180330 | HR-TB | lineage4.3.3 | None | SRR29056233 | Other | lineage2.2.1 | None | ERR6865428 | Pre-XDR-TB | lineage2.2.1 | None | ERR13265510 | Sensitive | lineage4.1.2 | None | ERR13261698 | MDR-TB | lineage4.1.2.1 | None | SRR25534277 | Sensitive | lineage2.2.1 | None | SRR7535063 | Sensitive | lineage3.1.1 | None | SRR6785528 | Sensitive | lineage4.8 | None | SRR14781907 | Pre-XDR-TB | lineage2.2.1 | None | SRR29681340 | Pre-XDR-TB | lineage2.2.1 | None | DRR474037 | Sensitive | lineage2.2.1 | None | ERR13260221 | Pre-XDR-TB | lineage2.2.1 | None | ERR11050170 | Sensitive | lineage4.1.2.1 | None | ERR13261278 | MDR-TB | lineage2.2.1 | None | SRR28351596 | MDR-TB | lineage2.2.1.1 | None | ERR13284674 | MDR-TB | lineage4.4.1.1 | None | SRR16089406 | Other | lineage2.2.1 | None | SRR10869080 | Sensitive | lineage2.2.1.1 | None | SRR29017036 | Pre-XDR-TB | lineage2.2.1 | None | SRR21031703 | Sensitive | lineage2.2.1 | None | SRR20139558 | Pre-XDR-TB | lineage4.1.4 | None | ERR11466294 | Sensitive | lineage4.3.4.1 | None | SRR27450612 | Sensitive | lineage4.3.4.2 | None | ERR2510592 | Pre-XDR-TB | lineage4.6.2.2 | pk | ERR13260603 | MDR-TB | lineage4.1.2.1 | None | ERR2510537 | Other | lineage3 | pk | ERR13284442 | Other | lineage4.5 | None | DRR474201 | HR-TB | lineage2.2.1 | None | ERR13285581 | Sensitive | lineage4 | None | SRR28858393 | Sensitive | lineage4.8 | None | ERR4796771 | Pre-XDR-TB | lineage2.2.1 | in | ERR4798714 | Pre-XDR-TB | lineage2.2.1 | in | ERR13195610 | HR-TB | lineage2.2.2 | None | ERR4810778 | Sensitive | lineage2.2.1 | cn | SRR28394150 | MDR-TB | lineage2.2.1 | None | SRR22461710 | RR-TB | lineage4.3.3 | None | SRR10808431 | Sensitive | lineage4 | None | ERR4822587 | Pre-XDR-TB | lineage2.2.1 | tm | ERR4822590 | Pre-XDR-TB | lineage2.2.1 | tm | ERR4822591 | Pre-XDR-TB | lineage2.2.1 | tm | SRR28498580 | Pre-XDR-TB | lineage4.2.1 | None | SRR28044856 | Sensitive | lineage2.2.1 | None | ERR3287843 | Pre-XDR-TB | lineage2.2.1 | pe | SRR27069415 | HR-TB | lineage2.2.1 | None | ERR4812839 | MDR-TB | lineage2.2.1 | None | ERR7737745 | MDR-TB | lineage4.2.2.2 | None | ERR4830587 | Pre-XDR-TB | lineage2.2.1 | tm | ERR4812913 | MDR-TB | lineage2.2.1 | None | ERR4830604 | MDR-TB | lineage2.2.1 | tm | ERR4813188 | Pre-XDR-TB | lineage2.2.1;lineage4 | pe | ERR4813204 | Pre-XDR-TB | lineage2.2.1 | pe | ERR4813207 | Pre-XDR-TB | lineage2.2.1 | pe | ERR775382 | Pre-XDR-TB | lineage2.2.1 | pe | SRR23862151 | HR-TB | lineage2.2.1 | None | SRR21732409 | Sensitive | lineage4.1.1.1 | None | ERR2184245 | Pre-XDR-TB | lineage2.2.1;lineage4.7 | None | ERR2516697 | MDR-TB | lineage2.2.1 | pe | ERR2516624 | MDR-TB | lineage2.2.1 | pe | ERR2514017 | Sensitive | lineage4.8 | gb | ERR12117973 | Pre-XDR-TB | lineage2.2.1 | None | SRR9588566 | Sensitive | lineage4.1.2 | None | ERR13260306 | Pre-XDR-TB | lineage4.1.2.1 | None | SRR12420650 | MDR-TB | lineage2.2.1 | None | ERR550892 | HR-TB | lineage2.2.1 | None | SRR10808404 | MDR-TB | lineage2.2.1 | None | SRR5067387 | Other | lineage2.2.1 | vn | ERR279491 | Other | lineage2.2.2 | None | SRR11662547 | MDR-TB | lineage2.2.1 | None | SRR15315788 | HR-TB | lineage2.2.1.2 | None | SRR13870368 | MDR-TB | lineage2.2.1 | None | SRR7645874 | MDR-TB | lineage2.2.1;lineage4.2.1 | None | SRR16370282 | Other | lineage2.2.1 | None | SRR28044471 | Sensitive | lineage2.2.1 | None | SRR10869078 | Pre-XDR-TB | lineage2.2.2 | None | SRR16088407 | Pre-XDR-TB | lineage2.2.1 | None | SRR21277610 | Sensitive | lineage2.2.1.1 | None | ERR2184241 | MDR-TB | lineage2.2.1 | pe | ERR3287433 | MDR-TB | lineage2.2.1 | pe | ERR4813078 | Pre-XDR-TB | lineage2.2.1 | pe | ERR3287584 | Pre-XDR-TB | lineage2.2.1 | None | ERR9121250 | Sensitive | lineage1.1.2 | None | SRR25534337 | MDR-TB | lineage2.2.1 | None | ERR2124101 | MDR-TB | lineage2.2.1 | None | ERR4815373 | Sensitive | lineage4.3.3 | None | SRR14801551 | HR-TB | lineage4.2.1 | None | ERR4195318 | Sensitive | lineage1.1.2 | None | SRR18714857 | MDR-TB | lineage2.2.1 | None | SRR13870406 | Pre-XDR-TB | lineage2.2.1 | None |
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