SRR5065328
|
Other
|
lineage2.2.2
|
vn
|
ERR2653067
|
MDR-TB
|
lineage4.7
|
None
|
SRR25827769
|
Pre-XDR-TB
|
lineage2.2.1;lineage4.5
|
None
|
ERR11080936
|
MDR-TB
|
lineage3
|
None
|
SRR10851694
|
Sensitive
|
lineage4.7
|
None
|
ERR11489046
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14782298
|
HR-TB
|
lineage2.2.1
|
None
|
ERR751988
|
Other
|
lineage2.2.1
|
th
|
SRR20969645
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR5709853
|
HR-TB
|
lineage2.2.1
|
th
|
ERR9806931
|
MDR-TB
|
lineage4.1.1.3
|
None
|
SRR29096398
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR22249372
|
Sensitive
|
lineage2.2.1
|
None
|
ERR2677415
|
MDR-TB
|
lineage4
|
de
|
SRR28868348
|
Sensitive
|
lineage2.2.1
|
None
|
ERR13191059
|
MDR-TB
|
lineage2.2.2
|
None
|
ERR5987378
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4831535
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR13292058
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR10112868
|
Pre-XDR-TB
|
lineage2.2.1.1
|
None
|
ERR10748299
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR12420396
|
Sensitive
|
lineage2.2.1
|
None
|
SRR22175269
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28045263
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR25628599
|
Sensitive
|
lineage2.2.1
|
None
|
ERR4830363
|
HR-TB
|
lineage2.1
|
vn
|
SRR8651655
|
Pre-XDR-TB
|
lineage2.2.1
|
cn
|
ERR13297994
|
MDR-TB
|
lineage2.2.2
|
None
|
SRR29440582
|
Sensitive
|
lineage4.6.1.1
|
None
|
ERR4800389
|
Sensitive
|
lineage3
|
None
|
ERR11774978
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29093808
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR30182886
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR22137422
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29093846
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29093765
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR4799908
|
Pre-XDR-TB
|
lineage3
|
in
|
SRR26112565
|
Sensitive
|
lineage4.1.1.1
|
None
|
ERR13260562
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR1873474
|
Pre-XDR-TB
|
lineage2.2.1
|
za
|
SRR10869258
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR15014678
|
MDR-TB
|
lineage2.2.1.1
|
None
|
ERR108462
|
MDR-TB
|
lineage2.2.1
|
ru
|
SRR29096347
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13266572
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR13195552
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR13260563
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR29052921
|
Sensitive
|
lineage4.1.1.1
|
None
|
ERR13261392
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13285221
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR133828
|
Sensitive
|
lineage4.8
|
ru
|
ERR4011077
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR8651570
|
Pre-XDR-TB
|
lineage2.2.1
|
cn
|
ERR8975774
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR752070
|
RR-TB
|
lineage2.2.1
|
th
|
DRR188616
|
Other
|
lineage2.2.1
|
None
|
ERR9119983
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR9806873
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4011057
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29096216
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29096668
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4799540
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR7911611
|
XDR-TB
|
lineage2.2.1
|
za
|
SRR25827813
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR22250246
|
Sensitive
|
lineage3
|
None
|
ERR1873560
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29093421
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR18714947
|
Sensitive
|
lineage4.1.2.1
|
None
|
ERR8025496
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29096772
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR403274
|
Sensitive
|
lineage4.8
|
None
|
SRR29231056
|
Sensitive
|
lineage4.7
|
None
|
SRR22251524
|
Sensitive
|
lineage3
|
None
|
ERR4799491
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4799621
|
Sensitive
|
lineage3.1.2.1
|
in
|
ERR13266946
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR6824581
|
MDR-TB
|
lineage2.2.1;lineage2.2.2
|
cn
|
SRR29096827
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR9030318
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR28044663
|
Sensitive
|
lineage2.2.1
|
None
|
ERR10748379
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29093840
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR182023
|
Sensitive
|
lineage4.3.4.2.1
|
mw
|
ERR6362178
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR6982187
|
Sensitive
|
lineage3
|
None
|
ERR7911553
|
Pre-XDR-TB
|
lineage2.2.1
|
za
|
ERR9119821
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29096855
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR25515885
|
Sensitive
|
lineage4.5
|
None
|
SRR21732333
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29093636
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR22251631
|
Sensitive
|
lineage2.2.1
|
None
|
ERR4830031
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR718345
|
Other
|
lineage2.2.1
|
th
|
SRR10305947
|
HR-TB
|
lineage2.2.1
|
None
|
ERR9992676
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13291866
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1140640
|
HR-TB
|
lineage3
|
None
|
ERR13286137
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR1873432
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4812421
|
Sensitive
|
lineage4.1.2.1
|
pe
|
SRR26936988
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29094075
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR6153172
|
Sensitive
|
lineage2.2.1
|
ca
|
ERR13284646
|
MDR-TB
|
lineage3
|
None
|
SRR13232617
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29096596
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR1199110
|
MDR-TB
|
lineage4.6.1.2
|
cd
|
ERR6866497
|
Sensitive
|
lineage4.1.2.1
|
None
|
ERR13288954
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR10040339
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR10040445
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR11489004
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4831536
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR11444291
|
Sensitive
|
lineage4.6.2.2
|
None
|
ERR13286098
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR25827669
|
XDR-TB
|
lineage2.2.1;lineage3
|
None
|
ERR10112888
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR25515709
|
Sensitive
|
lineage4.4
|
None
|
ERR4799764
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4011065
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR30180252
|
MDR-TB
|
lineage4.5
|
None
|
ERR13252663
|
Sensitive
|
lineage4.9
|
None
|
ERR13288994
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4809261
|
MDR-TB
|
lineage4.3.2.1
|
za
|
ERR9992778
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR2707076
|
MDR-TB
|
lineage4.6.1.2
|
cd
|
SRR13888772
|
Other
|
La2
|
None
|
SRR2100827
|
HR-TB
|
lineage3
|
None
|
SRR12420565
|
Sensitive
|
lineage2.2.1
|
None
|
SRR12420830
|
Sensitive
|
lineage2.2.1
|
None
|
ERR8025625
|
Pre-XDR-TB
|
lineage2.2.1;lineage2.2.2
|
None
|
SRR6785503
|
HR-TB
|
lineage2.2.1
|
None
|
SRR1710081
|
Other
|
lineage2.2.1
|
cn
|
SRR20969668
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR16088314
|
RR-TB
|
lineage2.2.1
|
None
|
SRR29093827
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR9119984
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR21732819
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR1654680
|
MDR-TB
|
lineage4.6.1.2
|
None
|
SRR24799256
|
Other
|
lineage2.2.1
|
None
|
SRR19267905
|
Sensitive
|
lineage4.1.1.1
|
None
|
ERR8975714
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29230784
|
MDR-TB
|
lineage4.6.1.2
|
None
|
SRR20969457
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR11043607
|
MDR-TB
|
lineage4
|
None
|
SRR29096372
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR7911539
|
Pre-XDR-TB
|
lineage2.2.1
|
za
|
ERR7911652
|
MDR-TB
|
lineage2.2.1
|
za
|
SRR10040354
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR10040463
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR067682
|
Sensitive
|
lineage4.8
|
ru
|
SRR11567811
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR22424732
|
RR-TB
|
lineage4.5
|
None
|
SRR29096519
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29096612
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29056303
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR1034647
|
MDR-TB
|
lineage4.1.1.3
|
None
|
DRR034443
|
Sensitive
|
lineage2.2.1
|
None
|
ERR3275961
|
Other
|
lineage4.9
|
nl
|
ERR2707095
|
MDR-TB
|
lineage4.6.1.2
|
cd
|
ERR2653219
|
MDR-TB
|
lineage4.1.1.1
|
None
|
ERR5865970
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR7162985
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28868906
|
Sensitive
|
lineage2.2.1
|
None
|
SRR29093655
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR28706591
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR28409329
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR25207291
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR21690581
|
Other
|
lineage4.9
|
None
|
SRR9971120
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13261389
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13261365
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4011051
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29096484
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR11774833
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29093807
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29096839
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5758371
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR9119830
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR20969672
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR16370654
|
Sensitive
|
lineage4.1.1.1
|
None
|
SRR1723539
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29093596
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29096952
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29093584
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13261560
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5979417
|
Pre-XDR-TB
|
lineage3
|
None
|
ERR13288992
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR13289403
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR1768627
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR7737939
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1181090
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8025497
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR25515255
|
Other
|
lineage2.2.1
|
None
|
SRR29096489
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13266809
|
MDR-TB
|
lineage2.2.2
|
None
|
ERR4831019
|
Pre-XDR-TB
|
lineage2.2.1
|
np
|
SRR29126863
|
Sensitive
|
lineage2.2.1
|
None
|
ERR13249158
|
Sensitive
|
lineage2.2.1
|
None
|
ERR13249162
|
HR-TB
|
lineage2.2.1
|
None
|
ERR4796388
|
MDR-TB
|
lineage2.2.1
|
in
|
ERR9992832
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR9285851
|
HR-TB
|
lineage3
|
None
|
SRR29096326
|
Pre-XDR-TB
|
lineage2.2.1.1
|
None
|
SRR29093270
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29096321
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29096947
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29539805
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28409449
|
Sensitive
|
lineage4.1.1.1
|
None
|
SRR29093548
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR22424942
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR8237351
|
MDR-TB
|
lineage2.2.1
|
np
|
ERR270717
|
HR-TB
|
lineage3
|
None
|
ERR9119713
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4011082
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13291620
|
Sensitive
|
lineage4.1.1.1
|
None
|
SRR10869280
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR25628600
|
Sensitive
|
lineage2.2.1
|
None
|
SRR5217422
|
Other
|
lineage2.2.1
|
None
|
ERR7911653
|
Pre-XDR-TB
|
lineage2.2.1
|
za
|
ERR3340710
|
MDR-TB
|
lineage2.2.1;lineage4.1.1.3
|
za
|
ERR7911664
|
Pre-XDR-TB
|
lineage2.2.1
|
za
|
ERR4830911
|
Pre-XDR-TB
|
lineage2.2.1
|
np
|
SRR14801914
|
HR-TB
|
lineage2.2.1
|
None
|
SRR22137480
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR6824451
|
MDR-TB
|
lineage2.2.1
|
cn
|
ERR13266143
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR12882743
|
Sensitive
|
lineage3.1.1
|
None
|
SRR7131183
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR3639800
|
Pre-XDR-TB
|
lineage3
|
None
|
SRR7069455
|
Pre-XDR-TB
|
lineage3
|
None
|
SRR6339637
|
MDR-TB
|
lineage2.2.1;lineage4.1.2.1
|
au
|
ERR1873562
|
Pre-XDR-TB
|
lineage2.2.1
|
za
|
SRR11662634
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR718490
|
Sensitive
|
lineage2.2.1
|
th
|
ERR4011058
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29093656
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29052652
|
Other
|
lineage2.2.1
|
None
|
ERR11465274
|
Sensitive
|
lineage4.9
|
None
|
SRR21277144
|
Sensitive
|
lineage2.2.1
|
None
|
ERR3148167
|
Pre-XDR-TB
|
lineage4.3.2
|
mx
|
SRR22137465
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR11972235
|
MDR-TB
|
lineage2.2.2
|
None
|
ERR7911615
|
Pre-XDR-TB
|
lineage2.2.1
|
za
|
SRR5709795
|
Pre-XDR-TB
|
lineage2.2.1
|
th
|
ERR9993142
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR25827391
|
Sensitive
|
lineage3
|
None
|
SRR29093563
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
DRR185089
|
HR-TB
|
lineage2.2.1
|
vn
|
SRR29093666
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR7911557
|
Pre-XDR-TB
|
lineage2.2.1
|
za
|
ERR10748240
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR16100710
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR10748349
|
MDR-TB
|
lineage2.2.1;lineage4.3.3
|
None
|
SRR29093263
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR9286052
|
HR-TB
|
lineage2.2.1
|
None
|
ERR8975808
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR21277519
|
HR-TB
|
lineage2.2.1
|
None
|
SRR29096629
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29093628
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR22137415
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR1035218
|
HR-TB
|
lineage4.3.4.2
|
pt
|
ERR10748152
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR10748382
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR10748502
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR7911619
|
Pre-XDR-TB
|
lineage2.2.1
|
za
|
SRR10869058
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR16156802
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR22137420
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4896313
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SAMN03246463
|
Pre-XDR-TB
|
lineage2.2.1
|
cn
|
ERR10112833
|
Pre-XDR-TB
|
lineage2.2.1.1
|
None
|
ERR8025420
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR10112885
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR15316314
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR5217421
|
Sensitive
|
lineage2.2.1
|
None
|
SRR27069445
|
Other
|
lineage2.2.1
|
None
|
SRR18496008
|
Sensitive
|
lineage2.2.1
|
None
|
SRR6485034
|
Sensitive
|
lineage2.2.1
|
None
|
ERR11773714
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR6052097
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR6280232
|
Sensitive
|
lineage2.2.1
|
cn
|
SRR10869059
|
Pre-XDR-TB
|
lineage2.2.1.1
|
None
|
SRR6153253
|
HR-TB
|
lineage3
|
ca
|
SRR15723073
|
Sensitive
|
lineage2.2.1
|
None
|
SRR10040408
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4011063
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4797934
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR10869232
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29093527
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR26937035
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR18715074
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR9807039
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5987226
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR10112836
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
DRR188780
|
Sensitive
|
lineage2.2.1
|
None
|
SRR12634630
|
Sensitive
|
lineage2.2.1
|
None
|
ERR13286117
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR12142388
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR22137411
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5865677
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR671858
|
Sensitive
|
lineage2.2.1
|
cn
|
SRR6389898
|
Sensitive
|
lineage4.8
|
gt
|
ERR13286097
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5987240
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29093562
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13266843
|
Sensitive
|
lineage3.1.2
|
None
|
ERR9992618
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR7911707
|
Pre-XDR-TB
|
lineage2.2.1
|
za
|
SRR6153234
|
HR-TB
|
lineage2.2.1
|
ca
|
ERR11044591
|
Sensitive
|
lineage3.1.3
|
None
|
ERR4796872
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR28859677
|
Sensitive
|
lineage3.1.2
|
None
|
ERR403317
|
Sensitive
|
lineage4.8
|
None
|
ERR10748114
|
Pre-XDR-TB
|
lineage2.2.1;lineage4.8.1
|
None
|
ERR1034644
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR9992782
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR7911547
|
Pre-XDR-TB
|
lineage2.2.1;lineage2.2.2
|
za
|
ERR11466234
|
Sensitive
|
lineage4.9
|
None
|
ERR2515159
|
Pre-XDR-TB
|
lineage2.2.1.1
|
za
|
SRR1723670
|
Sensitive
|
lineage2.2.1
|
cn
|
ERR7911526
|
Pre-XDR-TB
|
lineage2.2.1
|
za
|
ERR1023465
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR6832241
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR16156774
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR10112834
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR1873509
|
Pre-XDR-TB
|
lineage2.2.1
|
za
|
ERR8025626
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4829277
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR11567823
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR7911579
|
Pre-XDR-TB
|
lineage2.2.1;lineage4.3.3
|
za
|
ERR10748337
|
MDR-TB
|
lineage2.2.1;lineage4.3.3
|
None
|
ERR9119231
|
HR-TB
|
lineage2.1
|
None
|
SRR12420495
|
Sensitive
|
lineage2.2.1
|
None
|
ERR10748116
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11138656
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29096799
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR28351466
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR5065371
|
Pre-XDR-TB
|
lineage2.2.2
|
vn
|
SRR29231814
|
MDR-TB
|
lineage4.6.1.2
|
None
|
ERR13288928
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13267080
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8025609
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29096487
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR15315887
|
Sensitive
|
lineage2.2.1
|
None
|
ERR9806937
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29094081
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR21690631
|
Sensitive
|
lineage2.2.1
|
None
|
ERR2660450
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR20969426
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR4800577
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR24710117
|
HR-TB
|
lineage2.2.1
|
None
|
ERR13284131
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29096597
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29096513
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29093857
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29230681
|
Sensitive
|
lineage3.1.2
|
None
|
ERR12328190
|
Other
|
lineage2.2.1
|
None
|
SRR25827321
|
Pre-XDR-TB
|
lineage2.2.1;lineage4.2.2.2
|
None
|
SRR29096352
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR3794549
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4828763
|
Sensitive
|
lineage3.1.1
|
None
|
ERR10112905
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR25515261
|
Other
|
lineage2.2.1
|
None
|
SRR29094002
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5865678
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13261333
|
XDR-TB
|
lineage4.3.4.2
|
None
|
SRR29539262
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29017310
|
Sensitive
|
lineage3.1.1
|
None
|
ERR13242803
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR9119875
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR8217919
|
HR-TB
|
lineage2.2.1
|
None
|
SRR1181121
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR10748099
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4011076
|
MDR-TB
|
lineage2.2.1
|
None
|
DRR473854
|
Sensitive
|
lineage2.2.1
|
None
|
ERR13246383
|
Other
|
lineage2.2.1
|
None
|
ERR2707077
|
MDR-TB
|
lineage4.6.1.2
|
cd
|
ERR751973
|
Other
|
lineage2.2.1
|
th
|
ERR1873410
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR1873470
|
Pre-XDR-TB
|
lineage2.2.1
|
za
|
SRR5709847
|
Pre-XDR-TB
|
lineage2.2.1
|
th
|
SRR10869276
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4827675
|
HR-TB
|
lineage2.2.1
|
None
|
SAMN02381020
|
HR-TB
|
lineage3
|
ug
|
ERR8025622
|
HR-TB
|
lineage2.2.1
|
None
|
SRR13232477
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
DRR188784
|
HR-TB
|
lineage2.2.1
|
None
|
ERR1654684
|
MDR-TB
|
lineage4.6.1.2
|
None
|
ERR3639794
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4011086
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13260532
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR13261224
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR5341378
|
Other
|
lineage3
|
in
|
SRR15723268
|
Sensitive
|
lineage2.2.1
|
None
|
SRR25827601
|
XDR-TB
|
lineage2.2.1.1
|
None
|
ERR1034638
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4831584
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR20969763
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR5065471
|
Sensitive
|
lineage2.2.1
|
vn
|
SRR1062910
|
HR-TB
|
lineage3
|
None
|
SRR24710052
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR6485033
|
Sensitive
|
lineage2.2.1
|
None
|
SRR12420482
|
Sensitive
|
lineage2.2.1
|
None
|
ERR067640
|
Sensitive
|
lineage4.8
|
ru
|
ERR13262030
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR133934
|
Sensitive
|
lineage4.8
|
ru
|
ERR12311970
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR20969709
|
HR-TB
|
lineage2.2.1
|
None
|
ERR13284164
|
Pre-XDR-TB
|
lineage3
|
None
|
SRR29093757
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29096298
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29230791
|
MDR-TB
|
lineage4.6.1.2
|
None
|
SRR16103913
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR12708408
|
Other
|
lineage4.1.1.1
|
None
|
SRR29093606
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR1199031
|
Sensitive
|
lineage4.6.1.1
|
ug
|
SRR26399834
|
HR-TB
|
lineage2.1
|
None
|
ERR1873556
|
Pre-XDR-TB
|
lineage2.2.1
|
za
|
ERR9992829
|
MDR-TB
|
lineage2.2.1
|
None
|
DRR188961
|
Sensitive
|
lineage4.9
|
None
|
SRR12420752
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR10040197
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28868783
|
HR-TB
|
lineage2.2.1
|
None
|
SRR29096974
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR20969651
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR21576662
|
RR-TB
|
lineage2.2.1
|
None
|
ERR4811487
|
MDR-TB
|
lineage2.2.1
|
cn
|
ERR7911542
|
Pre-XDR-TB
|
lineage2.2.1
|
za
|
SRR20969591
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR7911647
|
Pre-XDR-TB
|
lineage2.2.1
|
za
|
ERR7911704
|
MDR-TB
|
lineage4.1.1.3
|
za
|
ERR13292144
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR20969630
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4797980
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR752034
|
Sensitive
|
lineage2.2.1
|
None
|
SRR26112130
|
Other
|
lineage2.2.1
|
None
|
ERR11080959
|
MDR-TB
|
lineage2.2.1;lineage4.3.3
|
None
|
SRR16156798
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR16156819
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR551144
|
Other
|
lineage4.8
|
de
|
SRR21001885
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR161071
|
Sensitive
|
La1.1;lineage3
|
mw
|
ERR11465157
|
Pre-XDR-TB
|
lineage2.2.1;lineage4.3.2.1
|
None
|
SRR21001884
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR671819
|
Pre-XDR-TB
|
lineage2.2.1
|
cn
|
ERR10748133
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR16156799
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR6357006
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR10465879
|
Sensitive
|
lineage3
|
None
|
ERR7911548
|
Pre-XDR-TB
|
lineage2.2.1
|
za
|
SRR1181120
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR2515371
|
Pre-XDR-TB
|
lineage2.2.1
|
za
|
ERR4011061
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR234135
|
Sensitive
|
lineage2.2.1
|
cn
|
ERR4011075
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR27980494
|
Sensitive
|
lineage2.2.1
|
None
|
SRR29093506
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29093431
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29093583
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR8758881
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4800051
|
MDR-TB
|
lineage2.2.2
|
in
|
ERR9806878
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR751683
|
Other
|
lineage2.2.1
|
th
|
ERR4799850
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR24710097
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR12420812
|
Sensitive
|
lineage2.2.1
|
None
|
SRR1180972
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR8025608
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR10748288
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR718460
|
Other
|
lineage2.2.1
|
th
|
ERR13195509
|
MDR-TB
|
lineage2.2.2
|
None
|
ERR8975031
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4828770
|
Sensitive
|
lineage3.1.1
|
None
|
ERR6052045
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR16156733
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR1034637
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR1873447
|
Pre-XDR-TB
|
lineage2.2.1
|
za
|
SRR10040443
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4827588
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29093854
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR18897161
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29093617
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29096499
|
MDR-TB
|
lineage2.2.1;lineage4.2.2.2
|
None
|
ERR12796611
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR5535715
|
HR-TB
|
lineage2.2.1
|
None
|
ERR4812313
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR15368910
|
Sensitive
|
lineage2.2.1
|
None
|
ERR5758354
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR10040159
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29096310
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR16156777
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|