lineage | Count |
---|---|
lineage4.1.2.1 | 1 |
lineage1.2.1.2.1 | 1 |
lineage1.1.1.1 | 3 |
lineage4.3.2 | 1 |
lineage3 | 8 |
lineage5.2 | 22 |
lineage2.2.1 | 8 |
lineage4.2.2.2 | 11 |
lineage1.1.3.1 | 1 |
lineage4.3.3 | 1 |
lineage4.6.4 | 8 |
lineage4.6.4;lineage4.3.3 | 1 |
spoligotype | Count |
---|---|
None | 66 |
ID | Drug resistance | Lineage | Country iso2 | ERR2516674 | MDR-TB | lineage4.1.2.1 | None | SRR6152780 | Sensitive | lineage1.2.1.2.1 | ca | ERR4828510 | Sensitive | lineage1.1.1.1 | None | ERR2843454 | Sensitive | lineage1.1.1.1 | None | ERR4812206 | Sensitive | lineage4.3.2 | pe | ERR4799117 | Pre-XDR-TB | lineage3 | in | ERR4872090 | MDR-TB | lineage5.2 | None | ERR4872171 | MDR-TB | lineage5.2 | None | ERR4831499 | Pre-XDR-TB | lineage3 | None | ERR4872167 | MDR-TB | lineage5.2 | None | ERR4872077 | Pre-XDR-TB | lineage5.2 | None | ERR4872089 | MDR-TB | lineage5.2 | None | ERR4872093 | MDR-TB | lineage5.2 | None | ERR4872094 | MDR-TB | lineage5.2 | None | ERR4872123 | MDR-TB | lineage5.2 | None | ERR4872138 | MDR-TB | lineage5.2 | None | ERR4872157 | MDR-TB | lineage5.2 | None | ERR4830417 | Sensitive | lineage2.2.1 | vn | ERR4872233 | MDR-TB | lineage5.2 | None | ERR4829127 | Pre-XDR-TB | lineage3 | pk | SRR786668 | Pre-XDR-TB | lineage3 | None | ERR4821157 | HR-TB | lineage3 | gb | ERR3639816 | MDR-TB | lineage4.2.2.2 | None | ERR9119499 | MDR-TB | lineage5.2 | None | ERR9119410 | Sensitive | lineage2.2.1 | None | ERR9119483 | Pre-XDR-TB | lineage5.2 | None | ERR9119496 | MDR-TB | lineage5.2 | None | ERR4828505 | Sensitive | lineage1.1.1.1 | vn | ERR9119495 | MDR-TB | lineage5.2 | None | ERR9119559 | MDR-TB | lineage5.2 | None | ERR9119542 | MDR-TB | lineage5.2 | None | ERR9119500 | MDR-TB | lineage5.2 | None | ERR9119529 | MDR-TB | lineage5.2 | None | ERR9119567 | MDR-TB | lineage5.2 | None | ERR9119627 | MDR-TB | lineage5.2 | None | ERR9119569 | MDR-TB | lineage5.2 | None | SRR1146342 | MDR-TB | lineage4.2.2.2 | None | SRR1144806 | MDR-TB | lineage4.2.2.2 | None | SRR1163122 | MDR-TB | lineage4.2.2.2 | None | SRR1162856 | MDR-TB | lineage4.2.2.2 | None | SRR14088349 | Pre-XDR-TB | lineage3 | None | SRR14782138 | Sensitive | lineage2.2.1 | None | SRR14782035 | Sensitive | lineage2.2.1 | None | SRR14519666 | Sensitive | lineage3 | None | SRR14782244 | Sensitive | lineage2.2.1 | None | SRR14801553 | Sensitive | lineage2.2.1 | None | SRR14801361 | Sensitive | lineage2.2.1 | None | SRR26112684 | Sensitive | lineage1.1.3.1 | None | ERR11081140 | MDR-TB | lineage4.2.2.2 | None | ERR11069058 | MDR-TB | lineage4.2.2.2 | None | SRR22048326 | Sensitive | lineage4.3.3 | None | ERR11081137 | MDR-TB | lineage4.2.2.2 | None | ERR11081285 | MDR-TB | lineage4.2.2.2 | None | ERR11082876 | Sensitive | lineage3 | None | ERR11081392 | MDR-TB | lineage4.2.2.2 | None | ERR1035324 | MDR-TB | lineage4.6.4 | br | SRR26399790 | Sensitive | lineage2.2.1 | None | ERR1035290 | Pre-XDR-TB | lineage4.6.4 | br | ERR1035310 | MDR-TB | lineage4.6.4 | br | ERR1035319 | MDR-TB | lineage4.6.4;lineage4.3.3 | br | ERR1035274 | Pre-XDR-TB | lineage4.6.4 | br | ERR1035303 | Pre-XDR-TB | lineage4.6.4 | br | ERR1035307 | MDR-TB | lineage4.6.4 | br | ERR1035355 | Pre-XDR-TB | lineage4.6.4 | br | ERR1035363 | Pre-XDR-TB | lineage4.6.4 | br | SAMN02414861 | MDR-TB | lineage4.2.2.2 | se |
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