Run ID: DRR034424
Sample name:
Date: 31-03-2023 06:58:19
Number of reads: 607261
Percentage reads mapped: 99.57
Strain: lineage2.2.1
Drug-resistance: RR-TB
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage2 | East-Asian | Beijing | RD105 | 1.0 |
lineage2.2 | East-Asian (Beijing) | Beijing-RD207 | RD105;RD207 | 1.0 |
lineage2.2.1 | East-Asian (Beijing) | Beijing-RD181 | RD105;RD207;RD181 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
rpoB | 761110 | p.Asp435Val | missense_variant | 0.11 | rifampicin |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
gyrA | 9323 | c.2022C>T | synonymous_variant | 1.0 |
gyrA | 9324 | p.Ser675Thr | missense_variant | 1.0 |
fgd1 | 491742 | c.960T>C | synonymous_variant | 1.0 |
mshA | 575500 | c.153G>T | synonymous_variant | 0.14 |
mshA | 575907 | p.Ala187Val | missense_variant | 1.0 |
ccsA | 620517 | c.627A>G | synonymous_variant | 0.12 |
ccsA | 620625 | p.Ile245Met | missense_variant | 1.0 |
ccsA | 620780 | p.Val297Gly | missense_variant | 1.0 |
rpoB | 760597 | p.Thr264Ile | missense_variant | 0.15 |
rpoB | 761029 | p.Pro408Arg | missense_variant | 0.11 |
rpoC | 763031 | c.-339T>C | upstream_gene_variant | 1.0 |
rpoC | 764393 | p.Asp342Asn | missense_variant | 0.11 |
rpoC | 765428 | p.Gln687* | stop_gained | 0.11 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 776100 | p.Thr794Ile | missense_variant | 1.0 |
mmpL5 | 776182 | p.Asp767Asn | missense_variant | 1.0 |
mmpL5 | 777947 | c.534G>A | synonymous_variant | 0.14 |
mmpS5 | 779615 | c.-710C>G | upstream_gene_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
fbiC | 1303063 | p.Ala45Thr | missense_variant | 0.12 |
Rv1258c | 1406760 | c.580_581insC | frameshift_variant | 1.0 |
Rv1258c | 1407324 | p.Arg6His | missense_variant | 0.22 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rpsA | 1833494 | c.-48T>C | upstream_gene_variant | 1.0 |
rpsA | 1834177 | c.636A>C | synonymous_variant | 1.0 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
katG | 2154724 | p.Arg463Leu | missense_variant | 1.0 |
katG | 2155450 | p.Ala221Val | missense_variant | 0.11 |
katG | 2155919 | p.Ala65Pro | missense_variant | 0.11 |
katG | 2156003 | p.Asp37Tyr | missense_variant | 0.11 |
PPE35 | 2167926 | p.Leu896Ser | missense_variant | 1.0 |
PPE35 | 2168128 | p.Ile829Phe | missense_variant | 0.1 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
pncA | 2289938 | c.-697T>A | upstream_gene_variant | 0.25 |
pncA | 2290059 | c.-818T>C | upstream_gene_variant | 0.17 |
kasA | 2518598 | p.Ala162Thr | missense_variant | 0.33 |
kasA | 2518606 | c.492G>C | synonymous_variant | 0.33 |
kasA | 2518609 | p.Met165Ile | missense_variant | 0.4 |
kasA | 2518809 | p.Lys232Met | missense_variant | 0.12 |
Rv2752c | 3066169 | p.Pro8Gln | missense_variant | 0.12 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
ald | 3086997 | p.Thr60Gly | missense_variant | 0.11 |
ald | 3087839 | c.1020C>A | synonymous_variant | 0.12 |
ald | 3087897 | p.Gly360Trp | missense_variant | 0.17 |
fbiD | 3339415 | p.Glu100Lys | missense_variant | 0.22 |
Rv3083 | 3448505 | c.2T>C | start_lost | 0.11 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
fprA | 3474843 | p.Lys279Asn | missense_variant | 0.17 |
Rv3236c | 3612813 | p.Thr102Ala | missense_variant | 1.0 |
clpC1 | 4039390 | p.Ile439Val | missense_variant | 0.13 |
panD | 4044427 | c.-146C>T | upstream_gene_variant | 0.13 |
embC | 4240840 | p.Trp326Cys | missense_variant | 0.15 |
embC | 4242263 | p.Glu801Gln | missense_variant | 0.11 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embA | 4243460 | c.228C>T | synonymous_variant | 1.0 |
embA | 4243593 | p.Ser121Pro | missense_variant | 0.25 |
embA | 4243621 | p.Thr130Lys | missense_variant | 0.17 |
embA | 4244803 | p.Leu524Ser | missense_variant | 0.12 |
embA | 4244935 | p.Thr568Ile | missense_variant | 0.12 |
embA | 4245196 | p.Ile655Thr | missense_variant | 0.11 |
embA | 4246395 | p.Gly1055* | stop_gained | 0.12 |
embB | 4247123 | p.Ala204Thr | missense_variant | 0.12 |
embB | 4249212 | p.Leu900Pro | missense_variant | 0.18 |
embB | 4249352 | p.Arg947Gly | missense_variant | 0.18 |
aftB | 4267579 | p.His420Asp | missense_variant | 0.11 |
aftB | 4267647 | p.Asp397Gly | missense_variant | 1.0 |
aftB | 4267711 | p.Ser376Gly | missense_variant | 0.14 |
aftB | 4267908 | p.Ala310Val | missense_variant | 0.15 |
aftB | 4268519 | c.318C>T | synonymous_variant | 0.12 |
ethR | 4326808 | c.-741G>C | upstream_gene_variant | 1.0 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
gid | 4407588 | c.615A>G | synonymous_variant | 1.0 |
gid | 4407688 | p.Arg172Pro | missense_variant | 1.0 |
gid | 4407927 | p.Glu92Asp | missense_variant | 1.0 |
gid | 4408134 | c.69C>T | synonymous_variant | 0.12 |