Run ID: ERR10748172
Sample name:
Date: 31-03-2023 10:46:23
Number of reads: 390186
Percentage reads mapped: 98.68
Strain: lineage4.1.1
Drug-resistance: MDR-TB
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.1 | Euro-American | T;X;H | None | 1.0 |
lineage4.1.1 | Euro-American (X-type) | X1;X2;X3 | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
rpoB | 761110 | p.Asp435Gly | missense_variant | 1.0 | rifampicin |
katG | 2155168 | p.Ser315Thr | missense_variant | 1.0 | isoniazid |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
fgd1 | 491510 | p.Leu243Ser | missense_variant | 0.18 |
rpoB | 760024 | p.Asp73Gly | missense_variant | 0.1 |
rpoB | 761277 | p.Ile491Leu | missense_variant | 1.0 |
rpoC | 765150 | p.Gly594Glu | missense_variant | 1.0 |
rpoC | 766706 | p.Glu1113Gln | missense_variant | 0.15 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rplC | 800690 | c.-119C>T | upstream_gene_variant | 0.2 |
fbiC | 1303891 | p.Ala321Thr | missense_variant | 0.13 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
katG | 2154331 | p.Phe594Tyr | missense_variant | 0.12 |
katG | 2154459 | c.1653C>G | synonymous_variant | 0.1 |
katG | 2154899 | p.Ala405Ser | missense_variant | 0.13 |
katG | 2154952 | p.Asp387Gly | missense_variant | 0.18 |
PPE35 | 2169519 | p.Gly365Asp | missense_variant | 0.15 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
kasA | 2518344 | p.Met77Arg | missense_variant | 0.12 |
folC | 2746161 | p.Thr480Ala | missense_variant | 0.13 |
thyX | 3067559 | c.387C>A | synonymous_variant | 0.11 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
fbiD | 3339346 | p.Ala77Thr | missense_variant | 0.18 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
fprA | 3474539 | p.Ile178Asn | missense_variant | 0.15 |
fprA | 3474960 | c.954C>T | synonymous_variant | 0.17 |
Rv3236c | 3612479 | p.Pro213Leu | missense_variant | 0.22 |
fbiA | 3641447 | p.Thr302Met | missense_variant | 1.0 |
rpoA | 3877553 | p.Glu319Lys | missense_variant | 1.0 |
rpoA | 3878601 | c.-95delG | upstream_gene_variant | 0.43 |
rpoA | 3878613 | c.-113_-107delCAACCCA | upstream_gene_variant | 0.33 |
clpC1 | 4038396 | c.2308dupG | frameshift_variant | 0.14 |
panD | 4044471 | c.-190T>C | upstream_gene_variant | 0.1 |
embC | 4240897 | c.1035C>G | synonymous_variant | 1.0 |
embC | 4241588 | p.Phe576Leu | missense_variant | 0.14 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embC | 4242803 | p.Val981Leu | missense_variant | 1.0 |
embB | 4249408 | c.2895G>A | synonymous_variant | 1.0 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
gid | 4408271 | c.-69A>C | upstream_gene_variant | 0.15 |