lineage | Count |
---|---|
lineage4.3.3 | 100 |
lineage2.2.1 | 67 |
lineage3 | 11 |
lineage4.1.1.1 | 2 |
lineage2.2.1.1 | 5 |
lineage4.1.2.1 | 2 |
lineage2.2.2 | 2 |
lineage4.3.4.2 | 1 |
lineage2.2 | 5 |
lineage2.2.1.2 | 1 |
lineage4.5 | 2 |
lineage3;lineage2.2.1.1 | 1 |
lineage4.3.3;lineage4.3.2.1 | 1 |
lineage4.3.4.1 | 1 |
lineage3.1.2 | 1 |
lineage4.3.3;lineage2.2.1 | 1 |
lineage4.1.4 | 1 |
lineage4.2.2 | 1 |
lineage1.1.2 | 1 |
lineage4.4.2 | 3 |
lineage1.2.1.2.1 | 2 |
lineage4.4.1.1 | 2 |
lineage4.1 | 1 |
lineage4.8 | 1 |
lineage3.1 | 1 |
spoligotype | Count |
---|---|
None | 216 |
ID | Drug resistance | Lineage | Country iso2 | SRR847787 | Pre-XDR-TB | lineage4.3.3 | za | ERR7911295 | Pre-XDR-TB | lineage2.2.1 | vn | ERR2510292 | Pre-XDR-TB | lineage3 | pk | ERR2510602 | MDR-TB | lineage3 | None | ERR4810968 | Pre-XDR-TB | lineage2.2.1 | cn | ERR2510630 | RR-TB | lineage3 | pk | ERR4830515 | Pre-XDR-TB | lineage4.3.3 | za | SAMN02585981 | Pre-XDR-TB | lineage4.3.3 | za | ERR2515776 | Pre-XDR-TB | lineage4.3.3 | za | SRR6824307 | RR-TB | lineage2.2.1 | cn | ERR4808988 | Pre-XDR-TB | lineage4.3.3 | za | ERR1035021 | RR-TB | lineage4.1.1.1 | za | ERR2706996 | RR-TB | lineage3 | cd | ERR4798235 | Pre-XDR-TB | lineage2.2.1.1 | in | ERR4798741 | MDR-TB | lineage4.1.1.1 | in | SAMN02350417 | Pre-XDR-TB | lineage4.3.3 | za | SRR8651577 | Pre-XDR-TB | lineage2.2.1 | cn | SAMN02350414 | Pre-XDR-TB | lineage4.3.3 | za | SAMN02586069 | Pre-XDR-TB | lineage4.3.3 | za | SRR7341702 | HR-TB | lineage4.1.2.1 | ro | SRR847788 | Pre-XDR-TB | lineage4.3.3 | za | ERR4811324 | Pre-XDR-TB | lineage2.2.1 | cn | SRR847783 | Pre-XDR-TB | lineage4.3.3 | za | SAMN02628493 | Pre-XDR-TB | lineage2.2.1 | ir | SRR847801 | Pre-XDR-TB | lineage4.3.3 | None | SAMN03246215 | MDR-TB | lineage2.2.1 | cn | ERR4831843 | MDR-TB | lineage2.2.1 | vn | SAMN02360611 | Pre-XDR-TB | lineage2.2.2 | kr | ERR10969128 | RR-TB | lineage4.3.4.2 | None | SRR15014667 | MDR-TB | lineage2.2 | None | SRR16088471 | MDR-TB | lineage2.2 | None | SRR20969667 | MDR-TB | lineage2.2 | None | SRR20969462 | MDR-TB | lineage2.2 | None | SRR23310936 | Pre-XDR-TB | lineage2.2 | None | SRR20970056 | MDR-TB | lineage2.2.1.2 | None | SRR23691420 | MDR-TB | lineage2.2.2 | None | ERR4810985 | MDR-TB | lineage2.2.1 | cn | ERR7911101 | MDR-TB | lineage2.2.1 | vn | SAMN02586076 | Pre-XDR-TB | lineage4.3.3 | za | SAMN02360550 | MDR-TB | lineage2.2.1 | kr | ERR4811332 | RR-TB | lineage4.5 | cn | ERR4810934 | MDR-TB | lineage2.2.1 | cn | SAMN02403621 | Pre-XDR-TB | lineage4.3.3 | za | ERR2515319 | Pre-XDR-TB | lineage4.3.3 | za | SRR833105 | Pre-XDR-TB | lineage4.3.3 | za | ERR4797227 | Pre-XDR-TB | lineage2.2.1 | in | ERR4830554 | Pre-XDR-TB | lineage4.3.3 | None | ERR4797311 | Pre-XDR-TB | lineage3;lineage2.2.1.1 | in | SRR1723546 | MDR-TB | lineage2.2.1 | None | ERR2515622 | Pre-XDR-TB | lineage4.3.3;lineage4.3.2.1 | za | SAMN02586018 | Pre-XDR-TB | lineage4.3.3 | za | SRR1723738 | MDR-TB | lineage2.2.1 | None | SRR671721 | MDR-TB | lineage2.2.1 | cn | SAMN03246286 | MDR-TB | lineage2.2.1 | cn | SAMN01828243 | Pre-XDR-TB | lineage4.3.3 | za | SAMN02586104 | Pre-XDR-TB | lineage4.3.3 | za | ERR7910853 | MDR-TB | lineage4.3.4.1 | pe | SRR6824662 | RR-TB | lineage2.2.1 | cn | SRR847794_SRR924220 | Pre-XDR-TB | lineage4.3.3 | None | ERR4811327 | Pre-XDR-TB | lineage2.2.1 | cn | SAMN02350427 | Pre-XDR-TB | lineage4.3.3 | za | SAMN02053760 | Pre-XDR-TB | lineage4.3.3 | za | SAMN02586066 | Pre-XDR-TB | lineage4.3.3 | za | SAMN02403568 | Pre-XDR-TB | lineage4.3.3 | za | SAMN02350433 | Pre-XDR-TB | lineage4.3.3 | za | SAMN02586103 | MDR-TB | lineage2.2.1 | za | SAMN02403467 | Pre-XDR-TB | lineage4.3.3 | za | ERR8975819 | Pre-XDR-TB | lineage4.3.3 | None | ERR8975515 | Pre-XDR-TB | lineage4.3.3 | None | SAMN02586081 | Pre-XDR-TB | lineage4.3.3 | za | SAMN02350426 | Pre-XDR-TB | lineage4.3.3 | za | SAMN02403569 | Pre-XDR-TB | lineage4.3.3 | za | ERR2515682 | Pre-XDR-TB | lineage4.3.3 | za | SRR847794 | Pre-XDR-TB | lineage4.3.3 | za | ERR133933 | MDR-TB | lineage2.2.1 | ru | ERR4796355 | Pre-XDR-TB | lineage3.1.2 | in | ERR1034662 | Pre-XDR-TB | lineage4.1.2.1 | bg | SRR847791 | Pre-XDR-TB | lineage4.3.3 | za | ERR229964 | MDR-TB | lineage2.2.1 | ru | SRR6824630 | MDR-TB | lineage2.2.1 | cn | SRR671748 | MDR-TB | lineage2.2.1 | cn | ERR4830524 | Pre-XDR-TB | lineage4.3.3 | za | SRR833059 | Pre-XDR-TB | lineage4.3.3 | za | SRR833173 | Pre-XDR-TB | lineage4.3.3 | za | SAMN01925663 | Pre-XDR-TB | lineage4.3.3 | za | ERR4811337 | MDR-TB | lineage2.2.1 | cn | SRR6824341 | MDR-TB | lineage2.2.1 | cn | ERR4811288 | Pre-XDR-TB | lineage2.2.1 | cn | ERR4810948 | Pre-XDR-TB | lineage2.2.1 | cn | ERR7911627 | Pre-XDR-TB | lineage4.3.3;lineage2.2.1 | za | ERR4798282 | MDR-TB | lineage3 | in | ERR4812740 | MDR-TB | lineage4.1.4 | pe | ERR4811280 | Pre-XDR-TB | lineage2.2.1 | cn | ERR7911483 | MDR-TB | lineage2.2.1 | vn | SAMN02053773 | Pre-XDR-TB | lineage4.3.3 | za | ERR4810962 | MDR-TB | lineage2.2.1 | cn | SRR6257056 | MDR-TB | lineage2.2.1 | None | ERR7911412 | MDR-TB | lineage2.2.1 | us | ERR7911119 | MDR-TB | lineage2.2.1.1 | vn | ERR4810471 | Pre-XDR-TB | lineage4.5 | cn | ERR4828371 | RR-TB | lineage4.2.2 | vn | ERR5918119 | Pre-XDR-TB | lineage4.3.3 | za | ERR4810956 | MDR-TB | lineage2.2.1 | cn | SAMN02350411 | Pre-XDR-TB | lineage4.3.3 | za | ERR133873 | Pre-XDR-TB | lineage2.2.1 | ru | SRR847778 | Pre-XDR-TB | lineage4.3.3 | za | SAMN02586068 | Pre-XDR-TB | lineage4.3.3 | za | ERR8975080 | Pre-XDR-TB | lineage4.3.3 | None | ERR2510503 | MDR-TB | lineage3 | pk | SAMN02586073 | Pre-XDR-TB | lineage4.3.3 | za | ERR7911209 | MDR-TB | lineage4.3.3 | za | SAMN02586080 | Pre-XDR-TB | lineage4.3.3 | za | ERR4810938 | Pre-XDR-TB | lineage2.2.1 | cn | SRR833115 | Pre-XDR-TB | lineage4.3.3 | za | ERR4808877 | Pre-XDR-TB | lineage4.3.3 | za | SRR833086 | Pre-XDR-TB | lineage4.3.3 | za | SRR847800 | Pre-XDR-TB | lineage4.3.3 | za | SRR671785 | Pre-XDR-TB | lineage2.2.1 | cn | ERR4810867 | MDR-TB | lineage2.2.1 | cn | ERR8975018 | XDR-TB | lineage4.3.3 | None | ERR1034984 | Pre-XDR-TB | lineage4.3.3 | za | ERR4797758 | Pre-XDR-TB | lineage1.1.2 | in | ERR4810931 | MDR-TB | lineage2.2.1 | cn | SAMN01925619 | Pre-XDR-TB | lineage4.3.3 | za | ERR4799753 | Pre-XDR-TB | lineage2.2.1.1 | in | SRR671794 | Pre-XDR-TB | lineage2.2.1 | cn | SRR2024949 | Pre-XDR-TB | lineage4.4.2 | cn | ERR7911193 | MDR-TB | lineage2.2.1 | za | ERR4810791 | Pre-XDR-TB | lineage2.2.1 | cn | SRR6824292 | MDR-TB | lineage2.2.1 | cn | ERR7911687 | Pre-XDR-TB | lineage4.3.3 | za | SAMN02350413 | Pre-XDR-TB | lineage4.3.3 | za | ERR3275949 | MDR-TB | lineage1.2.1.2.1 | nl | SRR6824343 | MDR-TB | lineage2.2.1 | cn | SRR847779 | Pre-XDR-TB | lineage4.3.3 | za | SRR6339665 | MDR-TB | lineage2.2.1 | None | SAMN02586084 | Pre-XDR-TB | lineage4.3.3 | za | SAMN02586087 | Pre-XDR-TB | lineage4.3.3 | za | ERR2515754 | Pre-XDR-TB | lineage4.3.3 | za | ERR8975698 | Pre-XDR-TB | lineage4.3.3 | None | ERR4811298 | Pre-XDR-TB | lineage2.2.1 | cn | ERR4809307 | MDR-TB | lineage4.4.1.1 | za | ERR040136 | MDR-TB | lineage3 | ug | SAMN01925634 | Pre-XDR-TB | lineage4.3.3 | za | SAMN02350430 | Pre-XDR-TB | lineage4.3.3 | za | ERR4810995 | MDR-TB | lineage2.2.1 | cn | SAMN02586065 | Pre-XDR-TB | lineage4.3.3 | za | SAMN02586041 | Pre-XDR-TB | lineage4.3.3 | za | SAMN02350421 | Pre-XDR-TB | lineage4.3.3 | za | SRR847778_SRR924219 | Pre-XDR-TB | lineage4.3.3 | None | ERR2516794 | MDR-TB | lineage3 | gb | ERR4830523 | MDR-TB | lineage2.2.1 | za | SRR6257097 | Pre-XDR-TB | lineage2.2.1 | ru | ERR7911566 | Pre-XDR-TB | lineage4.3.3 | za | ERR4810793 | Pre-XDR-TB | lineage2.2.1 | cn | ERR4808975 | Pre-XDR-TB | lineage4.3.3 | None | ERR4830557 | Pre-XDR-TB | lineage4.3.3 | None | ERR8975004 | Pre-XDR-TB | lineage4.3.3 | None | ERR3256119 | MDR-TB | lineage1.2.1.2.1 | ph | SAMN02350416 | Pre-XDR-TB | lineage4.3.3 | za | SAMN02586079 | Pre-XDR-TB | lineage4.3.3 | za | SRR847789 | Pre-XDR-TB | lineage4.3.3 | za | SRR6824520 | MDR-TB | lineage2.2.1 | cn | SAMN02350422 | Pre-XDR-TB | lineage4.3.3 | za | SAMN02360625 | MDR-TB | lineage2.2.1 | kr | ERR2515175 | Pre-XDR-TB | lineage4.3.3 | za | ERR4811287 | MDR-TB | lineage2.2.1 | cn | SAMN03246246 | RR-TB | lineage2.2.1 | cn | SRR833058 | Pre-XDR-TB | lineage4.3.3 | za | SAMN02586074 | Pre-XDR-TB | lineage4.3.3 | None | ERR4830506 | Pre-XDR-TB | lineage4.3.3 | za | SRR847776 | Pre-XDR-TB | lineage4.3.3 | za | SAMN02360628 | MDR-TB | lineage2.2.1 | kr | ERR8975726 | RR-TB | lineage2.2.1.1 | None | SRR833078 | Pre-XDR-TB | lineage4.3.3 | za | SAMN02586017 | Pre-XDR-TB | lineage4.3.3 | za | ERR2516764 | Pre-XDR-TB | lineage3 | gb | ERR7911288 | MDR-TB | lineage2.2.1 | vn | SAMN02350425 | Pre-XDR-TB | lineage4.3.3 | za | ERR1193881 | Pre-XDR-TB | lineage4.3.3 | za | ERR2516555 | MDR-TB | lineage4.1 | nl | SRR2024903 | MDR-TB | lineage4.4.2 | cn | SAMN02350431 | Pre-XDR-TB | lineage4.3.3 | za | SAMN02586090 | Pre-XDR-TB | lineage4.3.3 | za | ERR3335729 | MDR-TB | lineage3 | pk | SRR847792 | Pre-XDR-TB | lineage4.3.3 | za | SRR671760 | Pre-XDR-TB | lineage4.4.2 | cn | SRR847785 | Pre-XDR-TB | lineage4.3.3 | za | SAMN02350415 | Pre-XDR-TB | lineage4.3.3 | za | ERR4830469 | Pre-XDR-TB | lineage4.3.3 | za | ERR4810951 | Pre-XDR-TB | lineage2.2.1 | cn | SAMN02350412 | Pre-XDR-TB | lineage4.3.3 | za | SRR6824677 | MDR-TB | lineage2.2.1 | cn | ERR7911279 | MDR-TB | lineage2.2.1 | vn | ERR4811295 | Pre-XDR-TB | lineage2.2.1 | cn | SAMN03246263 | MDR-TB | lineage2.2.1 | cn | ERR4811310 | Pre-XDR-TB | lineage2.2.1 | cn | SAMN02628481 | Pre-XDR-TB | lineage2.2.1 | ir | SRR833077 | Pre-XDR-TB | lineage4.3.3 | za | SRR847777 | Pre-XDR-TB | lineage4.3.3 | za | ERR4810485 | MDR-TB | lineage2.2.1 | cn | SRR6824543 | MDR-TB | lineage2.2.1 | cn | SAMN02586070 | Pre-XDR-TB | lineage4.3.3 | za | SRR1166228 | MDR-TB | lineage4.8 | ro | ERR4809057 | RR-TB | lineage4.3.3 | za | SRR7341682 | Pre-XDR-TB | lineage4.4.1.1 | ro | ERR4796541 | MDR-TB | lineage2.2.1.1 | in | ERR2510436 | MDR-TB | lineage3 | pk | ERR4809290 | Pre-XDR-TB | lineage4.3.3 | za | SRR847779_SRR924227 | Pre-XDR-TB | lineage4.3.3 | None | ERR4829143 | MDR-TB | lineage3.1 | pk | SAMN02350429 | Pre-XDR-TB | lineage4.3.3 | za | ERR4810933 | MDR-TB | lineage2.2.1 | cn | SRR847796 | Pre-XDR-TB | lineage4.3.3 | za | SAMN02053766 | Pre-XDR-TB | lineage4.3.3 | za | ERR4809308 | RR-TB | lineage2.2.1 | za |
---|