SRR21576642
|
MDR-TB
|
lineage2.2.1
|
None
|
SAMEA5569971
|
MDR-TB
|
lineage4.3.4.1
|
None
|
ERR5865162
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4872200
|
MDR-TB
|
lineage5
|
None
|
ERR5865277
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR12420301
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13267430
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR5865746
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR18054780
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR8975698
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR13423565
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR25389524
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR7361984
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR5864852
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR9971123
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR2510602
|
MDR-TB
|
lineage3
|
None
|
ERR7361995
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR11043570
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR25207045
|
MDR-TB
|
lineage4.4.2
|
None
|
SRR1196575
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR11067724
|
Pre-XDR-TB
|
lineage1.2.2.2;lineage4.8
|
None
|
ERR8025683
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR11488367
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SAMN01925666
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR28409592
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4828067
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR15661588
|
MDR-TB
|
lineage2.2.1.1
|
None
|
SRR3743200
|
Pre-XDR-TB
|
lineage4.4.1.1
|
None
|
SRR23691420
|
MDR-TB
|
lineage2.2.2
|
None
|
SRR10303349
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR11488368
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR8758885
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR6797778
|
MDR-TB
|
lineage1.2.2.2
|
None
|
SRR1173200
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR5918119
|
Pre-XDR-TB
|
lineage4.3.3
|
za
|
ERR7361959
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR28393275
|
MDR-TB
|
lineage4.3.4.1
|
None
|
SRR25389486
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29273897
|
Pre-XDR-TB
|
lineage4.8
|
None
|
ERR11773758
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28923833
|
MDR-TB
|
lineage2.2.2
|
None
|
SRR25515697
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1175325
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR27069466
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR11773727
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR1173130
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1003107
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR3335729
|
MDR-TB
|
lineage3
|
pk
|
ERR4829143
|
MDR-TB
|
lineage3.1
|
pk
|
ERR13289280
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR13430445
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR9971230
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR9971248
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4798235
|
Pre-XDR-TB
|
lineage2.2.1.1
|
in
|
SRR1169277
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR11773752
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR29539669
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SAMN02586018
|
Pre-XDR-TB
|
lineage4.3.3
|
za
|
SRR1013664
|
XDR-TB
|
lineage2.2.2
|
None
|
SRR1062842
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR15316035
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11044245
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13267108
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29385511
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR2510503
|
MDR-TB
|
lineage3
|
pk
|
ERR2515175
|
Pre-XDR-TB
|
lineage4.3.3
|
za
|
ERR4810867
|
MDR-TB
|
lineage2.2.1
|
cn
|
ERR4812740
|
MDR-TB
|
lineage4.1.4
|
pe
|
ERR7911627
|
Pre-XDR-TB
|
lineage2.2.1;lineage4.3.3
|
za
|
SRR11349167
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR1167183
|
Pre-XDR-TB
|
lineage3.1.1;lineage4.3.3
|
None
|
SRR6650126
|
MDR-TB
|
lineage1.1.3.1
|
None
|
SRR671748
|
MDR-TB
|
lineage2.2.1
|
cn
|
ERR11080895
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11082256
|
MDR-TB
|
lineage4.7
|
None
|
SRR28888062
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR11773709
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR9992614
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR9992908
|
XDR-TB
|
lineage2.2.1;lineage4.3.3
|
None
|
SRR1172793
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR11082377
|
Pre-XDR-TB
|
lineage4.7
|
None
|
SRR1184301
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR1169155
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR1180379
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR2706996
|
RR-TB
|
lineage3
|
cd
|
ERR5866386
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR9971166
|
XDR-TB
|
lineage4.3.3
|
None
|
SAMN01925661
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SAMN01925634
|
Pre-XDR-TB
|
lineage4.3.3
|
za
|
SRR1062826
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR4808877
|
Pre-XDR-TB
|
lineage4.3.3
|
za
|
ERR4810931
|
MDR-TB
|
lineage2.2.1
|
cn
|
ERR4811324
|
Pre-XDR-TB
|
lineage2.2.1
|
cn
|
ERR13289283
|
RR-TB
|
lineage2.2.1.1
|
None
|
SRR6824341
|
MDR-TB
|
lineage2.2.1
|
cn
|
ERR9806708
|
MDR-TB
|
lineage4.3.2.1
|
None
|
ERR5865255
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5866385
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR15368764
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR4423692
|
MDR-TB
|
lineage4.6.2.2
|
None
|
ERR11773756
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4809290
|
Pre-XDR-TB
|
lineage4.3.3
|
za
|
ERR4811288
|
Pre-XDR-TB
|
lineage2.2.1
|
cn
|
SRR7341682
|
Pre-XDR-TB
|
lineage4.4.1.1
|
ro
|
SRR28394058
|
MDR-TB
|
lineage4.4.1.1
|
None
|
SRR1172254
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR1172869
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR1181290
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR28467067
|
MDR-TB
|
lineage2.2.2
|
None
|
ERR13273202
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR28393257
|
MDR-TB
|
lineage4.3.4.1
|
None
|
ERR10748304
|
MDR-TB
|
lineage2.2.1
|
None
|
SAMN02053748
|
Pre-XDR-TB
|
lineage4.3.3;lineage4.4.1.1
|
None
|
SAMN02053766
|
Pre-XDR-TB
|
lineage4.3.3
|
za
|
ERR4872041
|
Pre-XDR-TB
|
lineage4.7
|
None
|
SRR1011472
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR7911101
|
MDR-TB
|
lineage2.2.1
|
vn
|
SAMN01925658
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR4810985
|
MDR-TB
|
lineage2.2.1
|
cn
|
SRR25207365
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29772627
|
MDR-TB
|
lineage1.1.2
|
None
|
ERR4423693
|
MDR-TB
|
lineage4.6.2.2
|
None
|
ERR4830554
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR6824543
|
MDR-TB
|
lineage2.2.1
|
cn
|
SRR10315627
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR18054775
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR18914175
|
MDR-TB
|
lineage2.2.1;lineage4.4.2
|
None
|
SRR1196511
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR7911397
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR20969667
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR2515622
|
Pre-XDR-TB
|
lineage4.3.2.1;lineage4.3.3
|
za
|
ERR9907703
|
Pre-XDR-TB
|
lineage4.3.2
|
None
|
SRR3082095
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29093616
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR847794
|
Pre-XDR-TB
|
lineage4.3.3
|
za
|
SRR9970995
|
XDR-TB
|
lineage4.3.3
|
None
|
SRR10315624
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR6824662
|
RR-TB
|
lineage2.2.1
|
cn
|
SAMN02053760
|
Pre-XDR-TB
|
lineage4.3.3
|
za
|
SRR10315684
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR5864859
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR10868994
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR4811327
|
Pre-XDR-TB
|
lineage2.2.1
|
cn
|
ERR4827551
|
MDR-TB
|
lineage4.8
|
None
|
SRR29538881
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR21887694
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5864862
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1723535
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1165225
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SAMN02586066
|
Pre-XDR-TB
|
lineage4.3.3
|
za
|
ERR2515754
|
Pre-XDR-TB
|
lineage4.3.3
|
za
|
ERR4830557
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SAMN02403568
|
Pre-XDR-TB
|
lineage4.3.3
|
za
|
SRR25206949
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR16087967
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5865165
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR2510292
|
Pre-XDR-TB
|
lineage3
|
pk
|
ERR4831575
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR11488842
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR10040307
|
MDR-TB
|
lineage2.2.2
|
None
|
SRR832991
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR1181174
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR13286214
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR924226
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR13286201
|
Pre-XDR-TB
|
lineage2.2.2;lineage4.3.3
|
None
|
ERR4872039
|
XDR-TB
|
lineage4.7
|
None
|
ERR4810968
|
Pre-XDR-TB
|
lineage2.2.1
|
cn
|
SRR18002998
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR924227
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR1180211
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4831538
|
Pre-XDR-TB
|
lineage2.2.1;lineage4.3.3
|
None
|
SRR1196503
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR5864865
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4872042
|
XDR-TB
|
lineage4.7
|
None
|
ERR3287777
|
MDR-TB
|
lineage4.3.4.1;lineage4.9
|
None
|
SRR18003017
|
MDR-TB
|
lineage4.2.2
|
None
|
ERR5864850
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR473327
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR1173354
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR6336692
|
MDR-TB
|
lineage1.2.1.2.1
|
None
|
ERR4811280
|
Pre-XDR-TB
|
lineage2.2.1
|
cn
|
ERR4811332
|
RR-TB
|
lineage4.5
|
cn
|
SAMN01925639
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR7361975
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SAMN01925668
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR6824307
|
RR-TB
|
lineage2.2.1
|
cn
|
ERR040136
|
MDR-TB
|
lineage3
|
ug
|
ERR133933
|
MDR-TB
|
lineage2.2.1
|
ru
|
SAMN02628493
|
Pre-XDR-TB
|
lineage2.2.1
|
ir
|
SRR1173276
|
XDR-TB
|
lineage4.3.3
|
None
|
SRR1173498
|
MDR-TB
|
lineage2.2.1
|
None
|
SAMN03246215
|
MDR-TB
|
lineage2.2.1
|
cn
|
SRR1184297
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR11488703
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR924234
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR833029
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR924216
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR10610299
|
MDR-TB
|
lineage4.3.2.1
|
None
|
SAMN02586041
|
Pre-XDR-TB
|
lineage4.3.3
|
za
|
SAMN02586084
|
Pre-XDR-TB
|
lineage4.3.3
|
za
|
SRR1019172
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR11773725
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR1165723
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR833078
|
Pre-XDR-TB
|
lineage4.3.3
|
za
|
SRR847779
|
Pre-XDR-TB
|
lineage4.3.3
|
za
|
ERR11773705
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR28888068
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28888087
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR11773740
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR2510436
|
MDR-TB
|
lineage3
|
pk
|
SRR8651577
|
Pre-XDR-TB
|
lineage2.2.1
|
cn
|
SRR29681330
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28923834
|
MDR-TB
|
lineage2.2.2
|
None
|
SRR29772592
|
RR-TB
|
lineage3.1.2.1
|
None
|
ERR1035021
|
RR-TB
|
lineage4.1.1.1
|
za
|
ERR4809057
|
RR-TB
|
lineage4.3.3
|
za
|
ERR4810962
|
MDR-TB
|
lineage2.2.1
|
cn
|
SRR1180388
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR17234883
|
MDR-TB
|
lineage4.4.1.1
|
None
|
SRR6257056
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR6339665
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1183029
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1184366
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR6824292
|
MDR-TB
|
lineage2.2.1
|
cn
|
SRR6824677
|
MDR-TB
|
lineage2.2.1
|
cn
|
SRR29051547
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR3639736
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1184300
|
XDR-TB
|
lineage4.3.3
|
None
|
SRR2024903
|
MDR-TB
|
lineage4.4.2
|
cn
|
SRR14088361
|
MDR-TB
|
lineage3.1
|
None
|
SRR25206925
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR25389514
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR9971375
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR4797311
|
XDR-TB
|
lineage2.2.1.1;lineage3
|
in
|
SRR1166228
|
MDR-TB
|
lineage4.8
|
ro
|
SRR671721
|
MDR-TB
|
lineage2.2.1
|
cn
|
ERR13261254
|
Pre-XDR-TB
|
lineage4.8
|
None
|
SRR9971332
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR25389525
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4872049
|
Pre-XDR-TB
|
lineage4.7
|
None
|
SRR29273642
|
RR-TB
|
lineage4.1.2.1
|
None
|
ERR11488681
|
MDR-TB
|
lineage4.3.4.2
|
None
|
ERR5865163
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR7361989
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR4811295
|
Pre-XDR-TB
|
lineage2.2.1
|
cn
|
SRR29772657
|
MDR-TB
|
lineage1.1.2
|
None
|
ERR1873435
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SAMN02360625
|
MDR-TB
|
lineage2.2.1
|
kr
|
SAMN02403569
|
Pre-XDR-TB
|
lineage4.3.3
|
za
|
SAMN02586073
|
Pre-XDR-TB
|
lineage4.3.3
|
za
|
SRR10040264
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1011474
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR1165674
|
Pre-XDR-TB
|
lineage2;lineage4.3.3
|
None
|
SRR1169271
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR9971228
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR551452
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR5864849
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5864858
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR7910853
|
MDR-TB
|
lineage4.3.4.1
|
pe
|
ERR7911566
|
Pre-XDR-TB
|
lineage4.3.3
|
za
|
SAMN02360550
|
MDR-TB
|
lineage2.2.1
|
kr
|
SRR9971315
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR1062835
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR924219
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR924207
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR1173789
|
Pre-XDR-TB
|
lineage3.1.1;lineage4.3.3
|
None
|
SRR25207358
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4797227
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR10748172
|
MDR-TB
|
lineage4.1.1.1
|
None
|
DRR130161
|
MDR-TB
|
lineage4.5
|
None
|
SRR832996
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR11488533
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR4809308
|
RR-TB
|
lineage2.2.1
|
za
|
ERR4810793
|
Pre-XDR-TB
|
lineage2.2.1
|
cn
|
SRR833130
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR4872040
|
Pre-XDR-TB
|
lineage4.7
|
None
|
SRR20969462
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5987394
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR9970997
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR1723450
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11082345
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR10305838
|
RR-TB
|
lineage2.2.1
|
None
|
SRR1169191
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SAMN02053744
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SAMN01925653
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR13284145
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR924205
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR11488704
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR11488942
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR3105735
|
Pre-XDR-TB
|
lineage4.1.2
|
None
|
SRR10315655
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR4830515
|
Pre-XDR-TB
|
lineage4.3.3
|
za
|
SRR26936944
|
MDR-TB
|
lineage2.2.1
|
None
|
SAMN02403467
|
Pre-XDR-TB
|
lineage4.3.3
|
za
|
ERR5866387
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR8975819
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR28888079
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR20970056
|
MDR-TB
|
lineage2.2.1.2
|
None
|
SRR1173375
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR10315604
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR8975515
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR4872048
|
XDR-TB
|
lineage4.7
|
None
|
SRR12420401
|
RR-TB
|
lineage2.2.1
|
None
|
SRR1165698
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR27069370
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR22048300
|
RR-TB
|
lineage4.1.2.1
|
None
|
SAMN01925651
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SAMN03246263
|
MDR-TB
|
lineage2.2.1
|
cn
|
SRR16088213
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR8025610
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR1034662
|
Pre-XDR-TB
|
lineage4.1.2.1
|
bg
|
ERR229964
|
MDR-TB
|
lineage2.2.1
|
ru
|
ERR4827972
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR7362014
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR9971356
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR847788
|
Pre-XDR-TB
|
lineage4.3.3
|
za
|
SRR847796
|
Pre-XDR-TB
|
lineage4.3.3
|
za
|
ERR10969128
|
RR-TB
|
lineage4.3.4.2
|
None
|
ERR13290734
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4553424
|
RR-TB
|
lineage2.2.1
|
None
|
SRR833173
|
Pre-XDR-TB
|
lineage4.3.3
|
za
|
SRR26936993
|
Pre-XDR-TB
|
lineage2.2.1.1
|
None
|
ERR4811337
|
MDR-TB
|
lineage2.2.1
|
cn
|
SRR1062823
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR1173518
|
Pre-XDR-TB
|
lineage3.1.1;lineage4.3.3
|
None
|
SRR15315702
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR10430373
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR9971303
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR9992615
|
XDR-TB
|
lineage4.3.3
|
None
|
SRR833013
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR833058
|
Pre-XDR-TB
|
lineage4.3.3
|
za
|
SAMN02585981
|
Pre-XDR-TB
|
lineage4.3.3
|
za
|
ERR13191623
|
MDR-TB
|
lineage2.2.2
|
None
|
ERR9806902
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR1011470
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR4872043
|
Pre-XDR-TB
|
lineage4.7
|
None
|
ERR2515776
|
Pre-XDR-TB
|
lineage4.3.3
|
za
|
ERR9119965
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4553635
|
MDR-TB
|
lineage2.2
|
None
|
ERR4811298
|
Pre-XDR-TB
|
lineage2.2.1
|
cn
|
SAMN02350413
|
Pre-XDR-TB
|
lineage4.3.3
|
za
|
SAMN02586069
|
Pre-XDR-TB
|
lineage4.3.3
|
za
|
SRR847801
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR13423553
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR12420468
|
MDR-TB
|
lineage2.2.1;lineage4
|
None
|
ERR4831843
|
MDR-TB
|
lineage2.2.1
|
vn
|
ERR5865278
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR8025485
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SAMN02360611
|
XDR-TB
|
lineage2.2.2
|
kr
|
ERR11773739
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR28888086
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR3055713
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR29289265
|
XDR-TB
|
lineage4.1.1.3
|
None
|
SRR25206961
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1180330
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR924208
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR6785276
|
MDR-TB
|
lineage4.7
|
None
|
SRR10040385
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR833033
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR13286160
|
MDR-TB
|
lineage3.1.1
|
None
|
ERR13286170
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR13288743
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR13291098
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1062843
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR9119726
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4796355
|
Pre-XDR-TB
|
lineage3.1.2
|
in
|
ERR4872045
|
XDR-TB
|
lineage4.7
|
None
|
SAMN01925670
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SAMN02350425
|
Pre-XDR-TB
|
lineage4.3.3
|
za
|
SAMN02350430
|
Pre-XDR-TB
|
lineage4.3.3
|
za
|
SAMN02350431
|
Pre-XDR-TB
|
lineage4.3.3
|
za
|
SRR924692
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR11043505
|
MDR-TB
|
lineage4.2.2.1;lineage5
|
None
|
SRR25515754
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29274775
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13286055
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4796541
|
MDR-TB
|
lineage2.2.1.1
|
in
|
ERR9992999
|
XDR-TB
|
lineage4.3.3
|
None
|
SAMN01925638
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SAMN01925654
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SAMN02586081
|
Pre-XDR-TB
|
lineage4.3.3
|
za
|
SRR1011471
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR10303322
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR10430366
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1049077
|
XDR-TB
|
lineage2.2.2
|
None
|
SRR833086
|
Pre-XDR-TB
|
lineage4.3.3
|
za
|
SRR9970989
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR11044545
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13284649
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR13260542
|
MDR-TB
|
lineage4.3.2
|
None
|
ERR13288794
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SAMN02350429
|
Pre-XDR-TB
|
lineage4.3.3
|
za
|
SRR10040152
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR10040484
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR10040485
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR10315484
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1062844
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR924206
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR9992791
|
XDR-TB
|
lineage4.3.3
|
None
|
ERR9993074
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR11349166
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR1173199
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR9806993
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR6257097
|
Pre-XDR-TB
|
lineage2.2.1
|
ru
|
SRR924225
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR924232
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR9970994
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR20969768
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR847776
|
Pre-XDR-TB
|
lineage4.3.3
|
za
|
SRR22175178
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR25207369
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR6824630
|
MDR-TB
|
lineage2.2.1
|
cn
|
ERR5864863
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR10762254
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR1723546
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR12062505
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR13285740
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR2510630
|
RR-TB
|
lineage3
|
pk
|
ERR7911412
|
MDR-TB
|
lineage2.2.1
|
us
|
SRR1970693
|
MDR-TB
|
lineage4.9
|
None
|
SRR2024949
|
Pre-XDR-TB
|
lineage4.4.2
|
cn
|
SRR20969572
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR13286202
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR4798741
|
MDR-TB
|
lineage4.1.1.1
|
in
|
ERR4810471
|
Pre-XDR-TB
|
lineage4.5
|
cn
|
ERR8975004
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR1173795
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR28389869
|
MDR-TB
|
lineage4.1.1.3
|
None
|
SRR833105
|
Pre-XDR-TB
|
lineage4.3.3
|
za
|
SRR833121
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR28888069
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR2515682
|
Pre-XDR-TB
|
lineage4.3.3
|
za
|
SRR1173449
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SAMN02403621
|
Pre-XDR-TB
|
lineage4.3.3
|
za
|
SRR1167185
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR1167341
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR1169248
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR4553430
|
RR-TB
|
|
None
|
ERR11488425
|
MDR-TB
|
lineage3
|
None
|
SRR1723738
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1196510
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR12420432
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR22873599
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR28351324
|
Pre-XDR-TB
|
lineage3;lineage4.4.1.2
|
None
|
ERR11138631
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29096324
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SAMN01828243
|
Pre-XDR-TB
|
lineage4.3.3
|
za
|
SRR1184382
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR1011466
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR10040472
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1062827
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR13267054
|
Pre-XDR-TB
|
lineage2.2.1.1
|
None
|
SRR924694
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR5865254
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SAMN03246246
|
RR-TB
|
lineage2.2.1
|
cn
|
SRR25207299
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR10315605
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SAMN02586103
|
MDR-TB
|
lineage2.2.1
|
za
|
SRR1180233
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR7361988
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR1181220
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR1196477
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SAMN02586076
|
Pre-XDR-TB
|
lineage4.3.3
|
za
|
SRR1180230
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR11488574
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR1011463
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR1970692
|
MDR-TB
|
lineage4.9
|
None
|
ERR4830506
|
Pre-XDR-TB
|
lineage4.3.3
|
za
|
ERR5987220
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1181376
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR12062506
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR25207380
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR833115
|
Pre-XDR-TB
|
lineage4.3.3
|
za
|
SRR847791
|
Pre-XDR-TB
|
lineage4.3.3
|
za
|
SAMN01925614
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR21690392
|
MDR-TB
|
lineage1.2.1.2.1
|
None
|
ERR11044539
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR27069441
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5864856
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR847783
|
Pre-XDR-TB
|
lineage4.3.3
|
za
|
SRR1723507
|
MDR-TB
|
lineage2.2.1
|
None
|
SAMN02586070
|
Pre-XDR-TB
|
lineage4.3.3
|
za
|
SRR10315639
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR10748177
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR1173039
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR7911119
|
MDR-TB
|
lineage2.2.1.1
|
vn
|
SRR3105752
|
MDR-TB
|
lineage1.2.2.2;lineage4.1.2
|
None
|
SRR25207079
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1196515
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR25389527
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR9993123
|
XDR-TB
|
lineage4.3.3
|
None
|
SRR28467064
|
MDR-TB
|
lineage2.2.2
|
None
|
SRR1003101
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR9119598
|
MDR-TB
|
lineage5
|
None
|
SRR28119729
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR10748488
|
MDR-TB
|
lineage2.2.1
|
None
|
SAMN01925618
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR11773750
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR29289131
|
RR-TB
|
lineage3
|
None
|
ERR8975080
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR21276919
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29051569
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR4872046
|
XDR-TB
|
lineage4.7
|
None
|
ERR13289293
|
RR-TB
|
lineage2.2.1.1
|
None
|
ERR5865253
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4810938
|
Pre-XDR-TB
|
lineage2.2.1
|
cn
|
SRR9971243
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR13281466
|
MDR-TB
|
lineage4.2.2.1;lineage5
|
None
|
SRR671794
|
Pre-XDR-TB
|
lineage2.2.1
|
cn
|
SAMN02350412
|
Pre-XDR-TB
|
lineage4.3.3
|
za
|
SRR21887761
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR7911209
|
MDR-TB
|
lineage4.3.3
|
za
|
SRR11349184
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1173370
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR8975018
|
XDR-TB
|
lineage4.3.3
|
None
|
ERR5865164
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11488702
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR4872038
|
XDR-TB
|
lineage4.7
|
None
|
SRR9971051
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR1062840
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR1173448
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR20969956
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR9992647
|
XDR-TB
|
lineage4.3.3
|
None
|
SRR12420638
|
RR-TB
|
lineage2.2.1
|
None
|
ERR4872047
|
XDR-TB
|
lineage4.7
|
None
|
ERR4872037
|
XDR-TB
|
lineage4.7
|
None
|
ERR10748074
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR2516555
|
MDR-TB
|
lineage4.1
|
nl
|
SAMN02350421
|
Pre-XDR-TB
|
lineage4.3.3
|
za
|
ERR7737634
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR8773738
|
RR-TB
|
lineage4.3.3
|
None
|
SRR10040311
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR10040337
|
MDR-TB
|
lineage1.1.2
|
None
|
SRR21576613
|
MDR-TB
|
lineage4.2.2
|
None
|
SRR1181391
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR15316372
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR12420545
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR1193881
|
Pre-XDR-TB
|
lineage4.3.3
|
za
|
SRR25207096
|
Pre-XDR-TB
|
lineage4.5
|
None
|
SAMN02586079
|
Pre-XDR-TB
|
lineage4.3.3
|
za
|
ERR9992871
|
XDR-TB
|
lineage4.3.3
|
None
|
SRR1003108
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR25207223
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5864860
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR27069376
|
MDR-TB
|
lineage2.2.1
|
None
|
SAMN02586074
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR1183043
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR1180369
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR1181357
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR1196530
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR1172348
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR7911288
|
MDR-TB
|
lineage2.2.1
|
vn
|
ERR9119752
|
MDR-TB
|
lineage2.2.1
|
None
|
SAMN02586104
|
Pre-XDR-TB
|
lineage4.3.3
|
za
|
SRR25207346
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11488588
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR21887691
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR25207070
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR16088471
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR847792
|
Pre-XDR-TB
|
lineage4.3.3
|
za
|
ERR5864854
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR847785
|
Pre-XDR-TB
|
lineage4.3.3
|
za
|
SRR25206872
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR6362603
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5865923
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5864857
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13289393
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR10040154
|
MDR-TB
|
lineage2.2.1;lineage4.2.2
|
None
|
ERR8975726
|
RR-TB
|
lineage2.2.1.1
|
None
|
SRR21887730
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SAMN02350414
|
Pre-XDR-TB
|
lineage4.3.3
|
za
|
SAMN02360628
|
MDR-TB
|
lineage2.2.1
|
kr
|
ERR4872044
|
XDR-TB
|
lineage4.7
|
None
|
ERR4811310
|
Pre-XDR-TB
|
lineage2.2.1
|
cn
|
SRR833077
|
Pre-XDR-TB
|
lineage4.3.3
|
za
|
SRR924230
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR1172289
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1173391
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR1183028
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR9806900
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR26937102
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1723534
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1172188
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR18714925
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR8357275
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5865747
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1184333
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR6855822
|
Pre-XDR-TB
|
lineage4.3.2.1;lineage4.3.3
|
None
|
ERR5987376
|
MDR-TB
|
lineage2.2.1
|
None
|
SAMN02350416
|
Pre-XDR-TB
|
lineage4.3.3
|
za
|
ERR7361964
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR7516344
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR15315979
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR833023
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR13449608
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR13449608
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR15316385
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4810948
|
Pre-XDR-TB
|
lineage2.2.1
|
cn
|
SAMN01925663
|
Pre-XDR-TB
|
lineage4.3.3
|
za
|
SRR1019171
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR24256090
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR10315625
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SAMN01925667
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SAMN02350433
|
Pre-XDR-TB
|
lineage4.3.3
|
za
|
ERR11043661
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR1048840
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR12420419
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13430440
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13430444
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR25207104
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4810956
|
MDR-TB
|
lineage2.2.1
|
cn
|
SRR1165629
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR1184320
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR25207232
|
MDR-TB
|
lineage2.2.1
|
None
|
SAMN02350411
|
Pre-XDR-TB
|
lineage4.3.3
|
za
|
SRR1173101
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR4830469
|
Pre-XDR-TB
|
lineage4.3.3
|
za
|
ERR4830509
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR2515319
|
Pre-XDR-TB
|
lineage4.3.3
|
za
|
SAMN02586068
|
Pre-XDR-TB
|
lineage4.3.3
|
za
|
ERR4827659
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR847778
|
Pre-XDR-TB
|
lineage4.3.3
|
za
|
ERR5865275
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4423712
|
MDR-TB
|
lineage4.1.1.3
|
None
|
SRR1173251
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR28046263
|
MDR-TB
|
lineage3
|
None
|
SRR1062824
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR847800
|
Pre-XDR-TB
|
lineage4.3.3
|
za
|
SRR29772390
|
MDR-TB
|
lineage1.1.2
|
None
|
SRR671785
|
Pre-XDR-TB
|
lineage2.2.1
|
cn
|
ERR4808988
|
Pre-XDR-TB
|
lineage4.3.3
|
za
|
ERR13286043
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR1062834
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR2516764
|
Pre-XDR-TB
|
lineage3
|
gb
|
SRR1172323
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR1196542
|
XDR-TB
|
lineage4.3.3
|
None
|
ERR9806996
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR1011455
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR29093913
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR847787
|
Pre-XDR-TB
|
lineage4.3.3
|
za
|
SRR28119790
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28119710
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11044520
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR3275949
|
MDR-TB
|
lineage1.2.1.2.1
|
nl
|
ERR5865276
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR11488483
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR1174894
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR924213
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR1175022
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR7361977
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR1011454
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SAMN01925659
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR4809307
|
MDR-TB
|
lineage4.4.1.1
|
za
|
ERR9119966
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4810995
|
MDR-TB
|
lineage2.2.1
|
cn
|
SAMN01925650
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR9992629
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR4808975
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR10040349
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1048841
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR9806901
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SAMN02586090
|
Pre-XDR-TB
|
lineage4.3.3
|
za
|
SRR1169212
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR1173780
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR12420428
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5864851
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR11080938
|
MDR-TB
|
lineage4.1.2.1
|
None
|
SRR1723508
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1184326
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR25206966
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR9971040
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR28119795
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5864855
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4813819
|
Pre-XDR-TB
|
lineage4.4.1
|
None
|
SRR847789
|
Pre-XDR-TB
|
lineage4.3.3
|
za
|
SRR21887749
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4811287
|
MDR-TB
|
lineage2.2.1
|
cn
|
SRR1173560
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR5864853
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SAMN02586017
|
XDR-TB
|
lineage4.3.3
|
za
|
ERR13254277
|
MDR-TB
|
lineage4.5
|
None
|
SRR1175065
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR1011456
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR1196504
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR20632774
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR27069386
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5864861
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13289260
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR4827947
|
MDR-TB
|
lineage4.8
|
None
|
SRR24256238
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR4797758
|
Pre-XDR-TB
|
lineage1.1.2
|
in
|
ERR9992915
|
XDR-TB
|
lineage4.3.3
|
None
|
SAMN02350415
|
Pre-XDR-TB
|
lineage4.3.3
|
za
|
SAMN02053773
|
Pre-XDR-TB
|
lineage4.3.3
|
za
|
ERR7361978
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR833125
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SAMN02053807
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR1173142
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR1184331
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR4810934
|
MDR-TB
|
lineage2.2.1
|
cn
|
ERR8773737
|
RR-TB
|
lineage4.3.3
|
None
|
SRR1196571
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR847777
|
Pre-XDR-TB
|
lineage4.3.3
|
za
|
SRR924693
|
Pre-XDR-TB
|
lineage4.3.3;lineage4.4.1.1
|
None
|
SRR22873610
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR15316024
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR11081156
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR25389528
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR9806959
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR14088380
|
MDR-TB
|
lineage3
|
None
|
ERR5865279
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR6484913
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4553555
|
RR-TB
|
lineage1.2.2.2
|
None
|
ERR5865252
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4798282
|
MDR-TB
|
lineage3
|
in
|
SAMN02350427
|
Pre-XDR-TB
|
lineage4.3.3
|
za
|
ERR8774371
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR10748171
|
MDR-TB
|
lineage4.1.1.1
|
None
|
SRR24114343
|
MDR-TB
|
lineage3
|
None
|
SRR25207387
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR7911395
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1184298
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR1062822
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR18002993
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1167350
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR924223
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR7911483
|
MDR-TB
|
lineage2.2.1
|
vn
|
SRR833059
|
Pre-XDR-TB
|
lineage4.3.3
|
za
|
ERR4830524
|
Pre-XDR-TB
|
lineage4.3.3
|
za
|
SRR26112717
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR25206952
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SAMN01925617
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR20969507
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR20969664
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR833064
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR847793
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SAMN01925636
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR924215
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR1062828
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SAMN03246286
|
MDR-TB
|
lineage2.2.1
|
cn
|
SRR25207354
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR9029846
|
MDR-TB
|
lineage4.3.4.1
|
None
|
SRR28045728
|
MDR-TB
|
lineage3
|
None
|
ERR7911396
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR9970987
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR133873
|
Pre-XDR-TB
|
lineage2.2.1
|
ru
|
SRR1184378
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR28044691
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1964918
|
MDR-TB
|
lineage4.9
|
None
|
SAMN02350426
|
Pre-XDR-TB
|
lineage4.3.3
|
za
|
ERR4828371
|
RR-TB
|
lineage4.2.2
|
vn
|
ERR4830541
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1011462
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR4831526
|
Pre-XDR-TB
|
lineage3
|
None
|
SAMN02586080
|
Pre-XDR-TB
|
lineage4.3.3
|
za
|
ERR8774370
|
MDR-TB
|
lineage4.3.3
|
None
|
SAMN01925619
|
Pre-XDR-TB
|
lineage4.3.3
|
za
|
ERR4799753
|
Pre-XDR-TB
|
lineage2.2.1.1
|
in
|
SRR16088263
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4831550
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SAMN01925640
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR10315481
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR924220
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SAMN02586087
|
Pre-XDR-TB
|
lineage4.3.3
|
za
|
ERR11465081
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR13423594
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR924231
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR4830889
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR7911687
|
Pre-XDR-TB
|
lineage4.3.3
|
za
|
ERR4810791
|
Pre-XDR-TB
|
lineage2.2.1
|
cn
|
SRR6824343
|
MDR-TB
|
lineage2.2.1
|
cn
|
ERR11138647
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR15014667
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR28888061
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR9992695
|
XDR-TB
|
lineage4.3.3
|
None
|
SRR1011452
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR1011453
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR1011457
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR1013542
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR7361962
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR2516794
|
MDR-TB
|
lineage3
|
gb
|
SRR1173349
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR1173180
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR21887692
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4830523
|
MDR-TB
|
lineage2.2.1
|
za
|
ERR7911295
|
Pre-XDR-TB
|
lineage2.2.1
|
vn
|
SAMN02350422
|
Pre-XDR-TB
|
lineage4.3.3
|
za
|
ERR11081077
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR25206977
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR3256119
|
MDR-TB
|
lineage1.2.1.2.1
|
ph
|
SRR6797563
|
MDR-TB
|
lineage4.3.4.2
|
None
|
SRR6824520
|
MDR-TB
|
lineage2.2.1
|
cn
|
SRR10315583
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR9971039
|
XDR-TB
|
lineage4.3.3
|
None
|
SRR12420347
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR1034984
|
Pre-XDR-TB
|
lineage4.3.3
|
za
|
SRR25389526
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR9993225
|
XDR-TB
|
lineage4.3.2
|
None
|
SAMN01925641
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR11773708
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR9971187
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR9030363
|
MDR-TB
|
lineage1.1.2
|
None
|
SRR1165660
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR13423552
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR924212
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR1011458
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR1062846
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR1062839
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR924697
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR924214
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR3055714
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR13288883
|
RR-TB
|
lineage2.2.1
|
None
|
SRR13449601
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR13449601
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR8774395
|
MDR-TB
|
lineage4.1.1.3
|
None
|
SRR25207071
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1181396
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR4827637
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29093939
|
MDR-TB
|
lineage2.2.2
|
None
|
SRR20969553
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR13288854
|
RR-TB
|
lineage4.3.3
|
None
|
ERR5864864
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4830520
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR671760
|
Pre-XDR-TB
|
lineage4.4.2
|
cn
|
ERR13284225
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1144815
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR7339135
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR10040236
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1013541
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1062825
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR8025486
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR10315653
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR10315686
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR13583339
|
MDR-TB
|
lineage4.3.4.1
|
None
|
SAMN02628481
|
Pre-XDR-TB
|
lineage2.2.1
|
ir
|
SRR1180301
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR11349177
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR9970990
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR12420335
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4810485
|
MDR-TB
|
lineage2.2.1
|
cn
|
SRR1196576
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR11082585
|
MDR-TB
|
lineage4.8
|
None
|
SRR9971256
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR25206936
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR11349135
|
XDR-TB
|
lineage4.3.3
|
None
|
ERR10748187
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR10380216
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR1181243
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SAMN01925615
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SAMN02586065
|
Pre-XDR-TB
|
lineage4.3.3
|
za
|
SRR1011468
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SAMN01925660
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR21887690
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR4810933
|
MDR-TB
|
lineage2.2.1
|
cn
|