Run ID: ERR11049984
Sample name:
Date: 02-04-2023 06:01:02
Number of reads: 3082156
Percentage reads mapped: 99.53
Strain: lineage4.5
Drug-resistance: Other
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.5 | Euro-American | H;T | RD122 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
gyrA | 7570 | p.Ala90Val | missense_variant | 1.0 | ofloxacin, moxifloxacin, levofloxacin, fluoroquinolones, ciprofloxacin |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 7892 | c.591G>A | synonymous_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
mshA | 576108 | p.Ala254Gly | missense_variant | 0.15 |
mshA | 576442 | p.Cys365Trp | missense_variant | 0.25 |
mshA | 576616 | c.1269G>C | synonymous_variant | 0.43 |
ccsA | 620029 | c.139C>T | synonymous_variant | 1.0 |
rpoB | 761482 | p.Ala559Gly | missense_variant | 0.19 |
rpoC | 764367 | p.Gly333Ala | missense_variant | 0.16 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 777883 | p.Gly200Arg | missense_variant | 0.34 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rplC | 801237 | c.429G>A | synonymous_variant | 1.0 |
Rv1258c | 1406101 | p.Pro414Ser | missense_variant | 1.0 |
embR | 1416545 | p.Thr268Ile | missense_variant | 0.99 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
fabG1 | 1673553 | p.Asp38Glu | missense_variant | 0.44 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
PPE35 | 2170065 | p.Ala183Gly | missense_variant | 0.12 |
PPE35 | 2170568 | p.Ile15Met | missense_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
kasA | 2519071 | p.Asp319Glu | missense_variant | 0.3 |
pepQ | 2860159 | p.Ala87Gly | missense_variant | 0.15 |
fbiD | 3339734 | p.Ala206Gly | missense_variant | 0.57 |
fbiD | 3339751 | p.Ala212Pro | missense_variant | 0.53 |
Rv3083 | 3449393 | p.Leu297Ser | missense_variant | 1.0 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
fprA | 3474212 | p.Lys69Thr | missense_variant | 0.15 |
fprA | 3474376 | p.Ala124Thr | missense_variant | 1.0 |
whiB7 | 3568425 | c.255T>C | synonymous_variant | 0.29 |
rpoA | 3878575 | c.-68C>T | upstream_gene_variant | 1.0 |
rpoA | 3878597 | c.-90G>C | upstream_gene_variant | 0.21 |
rpoA | 3878613 | c.-106A>C | upstream_gene_variant | 0.38 |
rpoA | 3878641 | c.-134C>G | upstream_gene_variant | 0.73 |
clpC1 | 4038318 | p.Pro796Leu | missense_variant | 1.0 |
embC | 4240409 | p.Pro183Ala | missense_variant | 0.21 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embB | 4246527 | p.Ala5Gly | missense_variant | 0.4 |
embB | 4248328 | c.1815G>C | synonymous_variant | 0.24 |
whiB6 | 4338200 | p.Asp108His | missense_variant | 0.2 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |