SRR1368333
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR25340915
|
Sensitive
|
lineage3.1.2
|
None
|
ERR4828550
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29126478
|
MDR-TB
|
lineage4.3.1
|
None
|
SRR29274281
|
MDR-TB
|
lineage4.2.2.1
|
None
|
ERR13291922
|
HR-TB
|
lineage2.2.1
|
None
|
ERR13260152
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR4816072
|
Sensitive
|
lineage4.6.1.1
|
gb
|
SRR10397120
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR6866447
|
Sensitive
|
lineage4.1.2.1
|
None
|
ERR4828580
|
MDR-TB
|
lineage2.2.1
|
vn
|
ERR5866342
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5866343
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13260133
|
MDR-TB
|
lineage4.1.2
|
None
|
SRR21277578
|
Pre-XDR-TB
|
lineage4.5
|
None
|
SRR3105730
|
MDR-TB
|
lineage4.8
|
None
|
SRR25340747
|
Sensitive
|
lineage3.1.2
|
None
|
ERR4798520
|
Sensitive
|
lineage3
|
in
|
SRR5065451
|
HR-TB
|
lineage2.2.1
|
vn
|
ERR3148156
|
HR-TB
|
lineage4.8
|
mx
|
ERR4828227
|
MDR-TB
|
lineage2.2.1
|
vn
|
ERR5865477
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR1035350
|
MDR-TB
|
lineage4.3.2
|
br
|
SRR784917
|
Pre-XDR-TB
|
lineage3
|
None
|
SRR6964583
|
Other
|
lineage4.5
|
None
|
ERR4799333
|
Pre-XDR-TB
|
lineage3
|
in
|
ERR9993126
|
XDR-TB
|
lineage2.2.2
|
None
|
SRR16370508
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR14801970
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4830754
|
Pre-XDR-TB
|
lineage3
|
ir
|
SRR21747065
|
MDR-TB
|
lineage2.2.2
|
None
|
ERR5979432
|
Sensitive
|
lineage3.1.1
|
None
|
ERR2179676
|
MDR-TB
|
lineage4.5
|
cn
|
ERR6358745
|
MDR-TB
|
lineage4.6.1.2
|
None
|
SRR1368335
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR9285960
|
Sensitive
|
lineage3.1.1
|
None
|
SRR29050969
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5865290
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR11243556
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4813360
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR4828575
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1167375
|
MDR-TB
|
lineage4.8.1
|
None
|
SRR6824635
|
MDR-TB
|
lineage2.2.1
|
cn
|
SRR20632813
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR5153602
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR5153820
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR26399445
|
HR-TB
|
lineage2.2.1
|
None
|
SRR14807652
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4827756
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR26399915
|
HR-TB
|
lineage2.2.1
|
None
|
ERR552147_ERR552148
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR2516984
|
Pre-XDR-TB
|
lineage2.2.1
|
gb
|
SRR20969659
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR6832044
|
Sensitive
|
lineage2.2.1
|
None
|
SRR5338516
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR16370501
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR5865652
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5865945
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR9786480
|
Other
|
lineage4.3.4.1
|
None
|
SRR24673516
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4813086
|
MDR-TB
|
lineage4.3.3
|
pe
|
SRR6832245
|
Sensitive
|
lineage4.1.2.1
|
None
|
SRR1003104
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR11081823
|
MDR-TB
|
lineage3
|
None
|
SRR1049733
|
Pre-XDR-TB
|
lineage3
|
None
|
SRR15014760
|
Pre-XDR-TB
|
lineage3.1.2
|
None
|
SRR13232634
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR7910850
|
MDR-TB
|
lineage4.3.3
|
pe
|
SAMEA2533751
|
HR-TB
|
lineage2.2.1
|
tm
|
SRR15723112
|
HR-TB
|
lineage2.2.1
|
None
|
ERR4831798
|
HR-TB
|
lineage2.2.1
|
vn
|
SAMEA2533843
|
MDR-TB
|
lineage2.2.1
|
uz
|
ERR1035344
|
MDR-TB
|
lineage4.3.2
|
br
|
ERR4276865
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR2100289
|
HR-TB
|
lineage3
|
None
|
ERR4423629
|
Pre-XDR-TB
|
lineage3
|
None
|
ERR550851
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1165626
|
MDR-TB
|
lineage4.8.1
|
None
|
SRR1368332
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4553553
|
MDR-TB
|
lineage1.2.2.2
|
None
|
SRR6785445
|
Sensitive
|
lineage4.3.3
|
None
|
SRR1723491
|
Sensitive
|
lineage2.2.1
|
cn
|
ERR11043129
|
MDR-TB
|
lineage4.2.1
|
None
|
SRR1169125
|
MDR-TB
|
lineage4.8.1
|
None
|
SRR7516393
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR12142379
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR067482
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11488875
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13276394
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR5865438
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4811872
|
HR-TB
|
lineage4
|
pe
|
ERR4822398
|
Pre-XDR-TB
|
lineage2.2.1
|
ua
|
SRR1169205
|
MDR-TB
|
lineage4.8.1
|
None
|
ERR7911425
|
MDR-TB
|
lineage2.2.1
|
us
|
SRR1723638
|
Pre-XDR-TB
|
lineage2.2.1
|
cn
|
SRR5065610
|
MDR-TB
|
lineage2.2.1
|
vn
|
SRR7516320
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR7535063
|
Sensitive
|
lineage3.1.1
|
None
|
SRR13232673
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4810960
|
MDR-TB
|
lineage2.2.1
|
cn
|
SRR2024916
|
MDR-TB
|
lineage2.2.1
|
cn
|
SRR18911991
|
Sensitive
|
lineage4.1.2.1
|
None
|
SRR23862154
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5866231
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR6397615
|
HR-TB
|
lineage2.2.1
|
ca
|
SRR29051022
|
HR-TB
|
lineage4.1.4
|
None
|
ERR4810932
|
Pre-XDR-TB
|
lineage2.2.1
|
cn
|
ERR6866482
|
Sensitive
|
lineage4.1.2.1;lineage4.4.1.1
|
None
|
ERR2653196
|
Pre-XDR-TB
|
lineage4.3.4.2
|
None
|
ERR3794457
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1723811
|
MDR-TB
|
lineage2.2.1
|
cn
|
SRR21689852
|
Sensitive
|
lineage3.1.1
|
None
|
SRR3742655
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR11069080
|
MDR-TB
|
lineage3
|
None
|
SRR29273669
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR4828721
|
HR-TB
|
lineage2.2.1
|
vn
|
ERR13286117
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5865280
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR3148179
|
Pre-XDR-TB
|
lineage3
|
mx
|
SRR7516394
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR25389551
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR2513872
|
Pre-XDR-TB
|
lineage3
|
gb
|
ERR8975204
|
Sensitive
|
lineage4.3.2
|
None
|
ERR2653122
|
XDR-TB
|
lineage4.3.4.2
|
None
|
SRR5065631
|
HR-TB
|
lineage2.2.1
|
vn
|
ERR3639755
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR2307736
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR18665444
|
MDR-TB
|
lineage4.1.2.1
|
None
|
SAMN02381042
|
Pre-XDR-TB
|
lineage3
|
ug
|
SRR11033663
|
MDR-TB
|
lineage2.2.1
|
None
|
SAMN02360566
|
Pre-XDR-TB
|
lineage2.2.2
|
kr
|
SRR1062939
|
Pre-XDR-TB
|
lineage3
|
None
|
ERR4830572
|
MDR-TB
|
lineage2.2.1
|
tm
|
SRR18715020
|
Other
|
lineage4.3.3
|
None
|
SRR1723816
|
Pre-XDR-TB
|
lineage2.2.1
|
cn
|
SRR21710572
|
Sensitive
|
lineage4.1.2.1
|
None
|
SRR3742656
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13191366
|
MDR-TB
|
lineage2.2.2
|
None
|
SRR25515082
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR2707013
|
MDR-TB
|
lineage4.3.4.2
|
cd
|
ERR13439855
|
HR-TB
|
lineage1.1.1;lineage2.2.1
|
None
|
SRR15316055
|
Other
|
lineage2.2.1
|
None
|
ERR4831909
|
MDR-TB
|
lineage2.2.1
|
vn
|
ERR4831957
|
MDR-TB
|
lineage2.2.1
|
vn
|
ERR4872200
|
MDR-TB
|
lineage5
|
None
|
SRR1013561
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR4818866
|
Sensitive
|
lineage4.6.1.1
|
None
|
ERR13276216
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR11044171
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28498612
|
MDR-TB
|
lineage4.2.1
|
None
|
SRR29050858
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29772515
|
MDR-TB
|
lineage2.2.1.1
|
None
|
SRR28741118
|
MDR-TB
|
lineage2.1
|
None
|
ERR3273176
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29051235
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4813627
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR21279363
|
MDR-TB
|
lineage2.2.1.1
|
None
|
ERR4821955
|
Pre-XDR-TB
|
lineage3
|
None
|
ERR4822586
|
Pre-XDR-TB
|
lineage2.2.1;lineage4.8
|
tm
|
SRR14802165
|
HR-TB
|
lineage2.2.1
|
None
|
SRR6824295
|
MDR-TB
|
lineage2.2.1
|
cn
|
SRR6824410
|
Pre-XDR-TB
|
lineage2.2.1
|
cn
|
ERR4830580
|
MDR-TB
|
lineage2.2.1
|
tm
|
SRR25827447
|
Pre-XDR-TB
|
lineage2.2.1.1
|
None
|
ERR1199044
|
Sensitive
|
lineage4.6.1.1
|
None
|
ERR2515612
|
MDR-TB
|
lineage4.8.1
|
za
|
SRR22251843
|
Sensitive
|
lineage2.2.1
|
None
|
ERR8025550
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR4811808
|
Sensitive
|
lineage4
|
None
|
ERR4819593
|
Sensitive
|
lineage4.5
|
None
|
ERR11082359
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4829978
|
MDR-TB
|
lineage4.6.4
|
None
|
SRR26399409
|
HR-TB
|
lineage2.2.1
|
None
|
SRR29017303
|
HR-TB
|
lineage2.2.1
|
None
|
SRR5074170
|
HR-TB
|
lineage2.2.1
|
vn
|
ERR5865288
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR9613542
|
MDR-TB
|
lineage4.1.2
|
None
|
SRR12420558
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13260015
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR10748283
|
MDR-TB
|
lineage4.4.1.1
|
None
|
ERR4830248
|
HR-TB
|
lineage2.2.1
|
vn
|
SRR29914425
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4811995
|
Sensitive
|
lineage4.1.2
|
pe
|
SRR25389550
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR2512463
|
Sensitive
|
lineage3
|
gb
|
SRR18003013
|
Pre-XDR-TB
|
lineage4.4.2
|
None
|
ERR4813657
|
MDR-TB
|
lineage4.3.2
|
None
|
SRR15723268
|
Sensitive
|
lineage2.2.1
|
None
|
ERR5864824
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1723608
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR21276914
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR10397194
|
MDR-TB
|
lineage2.2.1
|
None
|
DRR184945
|
Sensitive
|
lineage2.2.1
|
vn
|
ERR7737641
|
MDR-TB
|
lineage4.2.2.2
|
None
|
SRR6785176
|
Sensitive
|
lineage4.1.2.1
|
None
|
SRR15723128
|
HR-TB
|
lineage2.2.1
|
None
|
ERR5865281
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4811076
|
Sensitive
|
lineage2.2.1;lineage4.5
|
cn
|
SAMN02419634
|
Pre-XDR-TB
|
lineage2.2.1
|
by
|
SRR6824524
|
MDR-TB
|
lineage4.4
|
cn
|
SRR1710076
|
Pre-XDR-TB
|
lineage2.2.2
|
cn
|
SRR10305983
|
MDR-TB
|
lineage4.4
|
None
|
SRR10500314
|
Pre-XDR-TB
|
lineage1.1.2
|
None
|
ERR4813714
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR21732102
|
Sensitive
|
lineage2.2.1
|
None
|
ERR11043661
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR3148177
|
Pre-XDR-TB
|
lineage3
|
mx
|
SRR2100740
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4811832
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR9119598
|
MDR-TB
|
lineage5
|
None
|
SRR18715339
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4822594
|
Pre-XDR-TB
|
lineage2.2.1;lineage4.8
|
tm
|
ERR4817248
|
Other
|
lineage4.6.2.2
|
gb
|
ERR067647
|
MDR-TB
|
lineage2.2.1
|
ru
|
ERR11243579
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5865476
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1163202
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR3170454
|
HR-TB
|
lineage6.3.1
|
gh
|
ERR551296
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR15368903
|
Other
|
lineage2.2.1
|
None
|
SRR1169033
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13281466
|
MDR-TB
|
lineage4.2.2.1;lineage5
|
None
|
SRR26936956
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR16370372
|
Other
|
lineage2.2.1
|
None
|
SAMN02419611
|
Pre-XDR-TB
|
lineage2.2.1
|
by
|
SRR10305965
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR5067401
|
Other
|
lineage2.2.1
|
vn
|
ERR5866418
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5866135
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11068412
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR14782766
|
Sensitive
|
lineage4.2
|
None
|
SRR13583386
|
HR-TB
|
lineage4.1.4
|
None
|
ERR5865756
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR18715165
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4423548
|
MDR-TB
|
lineage4.1.3
|
None
|
ERR4799245
|
XDR-TB
|
lineage2.2.1.1
|
in
|
ERR7737763
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4811100
|
Sensitive
|
lineage2.2.1.1
|
cn
|
ERR4811041
|
RR-TB
|
lineage2.2.1
|
cn
|
SRR671824
|
Pre-XDR-TB
|
lineage2.2.2
|
cn
|
SRR069949
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR5709949
|
Pre-XDR-TB
|
lineage2.2.1
|
th
|
SRR29772573
|
MDR-TB
|
lineage3
|
None
|
SAMN02360626
|
Pre-XDR-TB
|
lineage2.2.2
|
kr
|
ERR2179657
|
Pre-XDR-TB
|
lineage4.4.2
|
cn
|
SRR24114366
|
MDR-TB
|
lineage3
|
None
|
SRR1169119
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4810925
|
Pre-XDR-TB
|
lineage4
|
cn
|
SRR3742670
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR10809026
|
MDR-TB
|
lineage2.1
|
None
|
SRR12931805
|
Sensitive
|
lineage4.3.4.2
|
None
|
ERR4828422
|
HR-TB
|
lineage2.2.1.1
|
vn
|
ERR4810914
|
Sensitive
|
lineage2.2.1
|
cn
|
SRR15316372
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR2510482
|
MDR-TB
|
lineage4.9
|
None
|
SRR25515048
|
Sensitive
|
lineage2.2.1
|
None
|
SRR6152877
|
Sensitive
|
lineage3
|
ca
|
ERR5865291
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR5065637
|
HR-TB
|
lineage2.2.1
|
vn
|
ERR11081774
|
Sensitive
|
lineage4.5
|
None
|
ERR4831886
|
MDR-TB
|
lineage2.2.1
|
vn
|
SRR5065360
|
Sensitive
|
lineage2.2.1
|
vn
|
SRR15369028
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR10877856
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR21576585
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR15368990
|
Pre-XDR-TB
|
lineage4.5
|
None
|
SRR15723011
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR2307779
|
HR-TB
|
lineage2.2.1
|
None
|
SRR27069373
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4810486
|
Pre-XDR-TB
|
lineage2.2.1
|
cn
|
SRR13423544
|
Other
|
lineage4.5
|
None
|
ERR8665527
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR29274264
|
Pre-XDR-TB
|
lineage4.2.2.1
|
None
|
ERR7911733
|
MDR-TB
|
lineage2.2.1
|
us
|
ERR551295
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR25515529
|
Sensitive
|
lineage4.5
|
None
|
SRR1062892
|
Pre-XDR-TB
|
lineage2.2.1;lineage3
|
None
|
SRR13423584
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR25827350
|
Pre-XDR-TB
|
lineage2.2.1;lineage3
|
None
|
SRR1723994
|
Pre-XDR-TB
|
lineage4.4.2
|
cn
|
ERR4814494
|
Pre-XDR-TB
|
lineage3
|
gb
|
SRR16149182
|
Pre-XDR-TB
|
lineage4.2.2.1
|
None
|
ERR176668
|
Sensitive
|
lineage3.1.1
|
mw
|
SRR6824546
|
Pre-XDR-TB
|
lineage2.2.1
|
cn
|
ERR5866547
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR6982346
|
Sensitive
|
lineage2.2.1
|
None
|
SRR29017050
|
MDR-TB
|
lineage3
|
None
|
SRR1368336
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4457834
|
Sensitive
|
lineage4
|
None
|
ERR2179755
|
HR-TB
|
lineage4.4.2
|
cn
|
ERR551168
|
HR-TB
|
lineage2.2.1
|
None
|
SRR2099986
|
HR-TB
|
lineage3
|
None
|
ERR4832027
|
HR-TB
|
lineage2.2.1
|
vn
|
SRR21277096
|
HR-TB
|
lineage4.5
|
None
|
ERR4822285
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR5067674
|
Sensitive
|
lineage4.5
|
vn
|
ERR9993090
|
XDR-TB
|
lineage4.3.3
|
None
|
SRR6485006
|
Other
|
lineage2.2.1
|
None
|
SRR14782673
|
HR-TB
|
lineage4.3.3
|
None
|
SRR27069435
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1368334
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR7737650
|
MDR-TB
|
lineage2.2.1.1
|
None
|
SRR29274262
|
MDR-TB
|
lineage4.2.2.1
|
None
|
ERR4797794
|
MDR-TB
|
lineage2.2.1
|
in
|
SRR10305979
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR15723125
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SAMEA2534444
|
MDR-TB
|
lineage2.2.1
|
uz
|
SRR1163332
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR15316503
|
Sensitive
|
lineage2.2.1
|
None
|
SRR29093297
|
MDR-TB
|
lineage4.2.2.2
|
None
|
ERR552147
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR16115088
|
Sensitive
|
lineage2.2.1
|
None
|
SRR23862072
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR28706587
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4553425
|
HR-TB
|
|
None
|
SRR28393486
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR28394080
|
Sensitive
|
lineage4.3.3
|
None
|
ERR13285022
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13285073
|
MDR-TB
|
lineage4.2.1
|
None
|
SRR14782379
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR23861752
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11773826
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR15368960
|
HR-TB
|
lineage2.2.1.1
|
None
|
ERR13261653
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR5866546
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR228061
|
MDR-TB
|
lineage2.2.1
|
ru
|
SRR28498693
|
MDR-TB
|
lineage4.2.1
|
None
|
ERR5864825
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13292392
|
Sensitive
|
lineage4.1.2.1
|
None
|
SRR1196544
|
RR-TB
|
lineage4.3.2.1
|
None
|
ERR10748509
|
MDR-TB
|
lineage4.4.1.1
|
None
|
ERR270700
|
HR-TB
|
lineage3
|
None
|
ERR4800290
|
XDR-TB
|
lineage2.2.1.1;lineage4.8
|
in
|
SRR25534239
|
Sensitive
|
lineage4.4.2
|
None
|
ERR5865284
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR11082248
|
Sensitive
|
lineage2.2.1
|
None
|
ERR13285101
|
MDR-TB
|
lineage4.2.1
|
None
|
ERR1465957
|
Sensitive
|
lineage4.7
|
None
|
SRR10305838
|
RR-TB
|
lineage2.2.1
|
None
|
SRR29017090
|
MDR-TB
|
lineage1.2.2.2
|
None
|
SAMN02381049
|
Pre-XDR-TB
|
lineage3
|
ug
|
SRR15723024
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR10380197
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR1049734
|
Pre-XDR-TB
|
lineage3
|
None
|
SRR24709965
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR3742657
|
Pre-XDR-TB
|
La3;M.canetti;lineage2.2.1
|
None
|
SRR28351389
|
MDR-TB
|
lineage2.2.1;lineage4
|
None
|
ERR4800353
|
XDR-TB
|
lineage2.2.1.1
|
in
|
ERR4812945
|
MDR-TB
|
lineage4.3.3
|
pe
|
SRR29050991
|
HR-TB
|
lineage2.2.1.1
|
None
|
SRR14801340
|
HR-TB
|
lineage2.2.1
|
None
|
SRR14519834
|
HR-TB
|
lineage4.1.2.1
|
None
|
SRR21277444
|
MDR-TB
|
lineage2.2.1.1
|
None
|
ERR5866341
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR10040150
|
MDR-TB
|
lineage2.2.1.1
|
None
|
ERR5866136
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR752166
|
Sensitive
|
lineage1.1.3.1
|
th
|
ERR9119282
|
HR-TB
|
lineage2.2.1
|
None
|
ERR9286150
|
Sensitive
|
lineage4.6.1.2
|
None
|
ERR8976072
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR25515569
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR10305774
|
Sensitive
|
lineage2.2.1
|
None
|
SRR23861713
|
RR-TB
|
lineage4.8
|
None
|
ERR552148
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11043578
|
MDR-TB
|
lineage4.2.1
|
None
|
SRR6824569
|
MDR-TB
|
lineage2.2.1
|
cn
|
ERR7764398
|
Sensitive
|
lineage4.1.2.1
|
None
|
SRR15315933
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR28858606
|
Sensitive
|
lineage3.1
|
None
|
SRR21277076
|
Sensitive
|
lineage4.2.2
|
None
|
SRR21277127
|
Other
|
lineage2.2.2
|
None
|
SRR14801612
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5865439
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR114440
|
HR-TB
|
lineage3
|
None
|
ERR13273030
|
Sensitive
|
lineage2.2.1
|
None
|
SRR29341573
|
MDR-TB
|
lineage4.3.1
|
None
|
ERR4831791
|
HR-TB
|
lineage1.1.1;lineage2.2.1
|
vn
|
SRR27980481
|
Sensitive
|
lineage4.1.2
|
None
|
ERR13284545
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR7069115
|
Sensitive
|
lineage4.6.1.1
|
None
|
DRR188743
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4820156
|
Sensitive
|
lineage3
|
gb
|
ERR4828145
|
MDR-TB
|
lineage2.2.1
|
vn
|
ERR6358776
|
MDR-TB
|
lineage4.6.1.2
|
None
|
SRR11972407
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SAMN02403593
|
MDR-TB
|
lineage4.8.1
|
za
|
SRR6832463
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR25515018
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4813688
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR25207361
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR2101533
|
Sensitive
|
lineage2.2.1
|
None
|
ERR11081339
|
MDR-TB
|
lineage4.2.1
|
None
|
DRR474058
|
HR-TB
|
lineage2.2.1
|
None
|
ERR4831898
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4830300
|
HR-TB
|
lineage2.2.1
|
vn
|
SRR1049607
|
Pre-XDR-TB
|
lineage2.2.1;lineage3
|
None
|
ERR4831481
|
Pre-XDR-TB
|
lineage1.1.2
|
None
|
ERR4972547
|
Pre-XDR-TB
|
lineage4.4.1.1
|
None
|
ERR8686156
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR550850
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR5709743
|
Sensitive
|
lineage4.5
|
th
|
SRR16149174
|
MDR-TB
|
lineage4.2.2.1
|
None
|
SRR14782342
|
MDR-TB
|
lineage4.2.1
|
None
|
SRR1723607
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR21576690
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR6358740
|
MDR-TB
|
lineage4.6.1.2
|
None
|
ERR2653142
|
MDR-TB
|
lineage4.3.4.2
|
None
|
SRR6480577
|
Sensitive
|
lineage4.1.2.1
|
None
|
SRR6339667
|
MDR-TB
|
lineage3.1.2
|
au
|
ERR13290706
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR2510718
|
Pre-XDR-TB
|
lineage2.2.1
|
it
|
SRR3742669
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR20969644
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR502939
|
MDR-TB
|
lineage4.4
|
None
|
ERR9119336
|
HR-TB
|
lineage2.2.1
|
None
|
SRR5153094
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR403327
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1165659
|
MDR-TB
|
lineage4.8.1
|
None
|
ERR551295_ERR551296
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR2179669
|
MDR-TB
|
lineage4.4
|
cn
|
SRR6785386
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR22424849
|
Other
|
lineage3.1.2.1
|
None
|
ERR4832039
|
HR-TB
|
lineage2.2.1
|
vn
|
SRR29539432
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR751755
|
Sensitive
|
lineage2.2.1
|
th
|
ERR7737670
|
MDR-TB
|
lineage4.2.2.2
|
None
|
ERR4827805
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR8773647
|
RR-TB
|
lineage4.8
|
None
|
SRR671873
|
Sensitive
|
lineage3
|
cn
|
SRR15369054
|
Sensitive
|
lineage4.2.2
|
None
|
SRR11033761
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1048861
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR5866351
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR551167
|
HR-TB
|
lineage2.2.1
|
None
|
ERR13284953
|
MDR-TB
|
lineage4.4
|
None
|
SRR10808797
|
Sensitive
|
lineage1.1.3.1
|
None
|
SRR29539653
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1172071
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4797902
|
XDR-TB
|
lineage2.2.1.1
|
in
|
SRR14807627
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR10147676
|
Pre-XDR-TB
|
lineage3
|
None
|
SRR18714963
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR3273147
|
MDR-TB
|
lineage2.2.1.1
|
None
|
SRR6397961
|
HR-TB
|
lineage2.2.1
|
ca
|
SRR6824374
|
MDR-TB
|
lineage2.2.1
|
cn
|
SRR1173193
|
RR-TB
|
lineage4.3.2.1
|
None
|
ERR5865440
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5866352
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR12420430
|
Sensitive
|
lineage2.2.1
|
None
|
SRR7755683
|
Pre-XDR-TB
|
lineage2.2.1;lineage4.2.1
|
None
|
ERR2843515
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR28393262
|
MDR-TB
|
lineage4.8
|
None
|
ERR5865282
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR1035277
|
Pre-XDR-TB
|
lineage4.3.2
|
br
|
ERR7911398
|
MDR-TB
|
lineage2.2.1
|
us
|
ERR9993081
|
XDR-TB
|
lineage4.3.3
|
None
|
ERR4816677
|
Sensitive
|
lineage4.5
|
None
|
SRR1140625
|
Pre-XDR-TB
|
lineage3
|
None
|
ERR6358839
|
MDR-TB
|
lineage4.6.1.1
|
None
|
ERR4831953
|
MDR-TB
|
lineage2.2.1
|
vn
|
SRR1013574
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SAMN02360560
|
Pre-XDR-TB
|
lineage2.2.2
|
kr
|
ERR5866229
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11775817
|
Sensitive
|
lineage3.1.1
|
None
|
SRR1013573
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR1048880
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR1048879
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR18715333
|
MDR-TB
|
lineage2.2.1;lineage4.2.1.1
|
None
|
SRR28239639
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4553406
|
MDR-TB
|
|
None
|
SRR28409714
|
Sensitive
|
lineage4.1.2.1
|
None
|
ERR3148192
|
MDR-TB
|
lineage4.3.3
|
mx
|
SRR8651577
|
Pre-XDR-TB
|
lineage2.2.1
|
cn
|
ERR11811371
|
HR-TB
|
lineage2.2.1
|
None
|
SRR29441079
|
Sensitive
|
lineage2.2.1
|
None
|
SRR29772544
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR29772377
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR25207155
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4822384
|
MDR-TB
|
lineage2.2.1
|
kg
|
SRR21277429
|
MDR-TB
|
lineage2.2.1.1
|
None
|
SRR24709961
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29017065
|
MDR-TB
|
lineage1.2.2.2
|
None
|
ERR9992664
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR25827502
|
Pre-XDR-TB
|
lineage2.2.1;lineage3.1.2.1
|
None
|
ERR13260172
|
MDR-TB
|
lineage4.3.2
|
None
|
ERR13285082
|
MDR-TB
|
lineage4.2.1
|
None
|
ERR2513954
|
Pre-XDR-TB
|
lineage3
|
gb
|
ERR551472
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1184314
|
RR-TB
|
lineage4.3.2.1
|
None
|
SRR10380209
|
MDR-TB
|
lineage2.2.1;lineage4.3.3
|
None
|
SRR15723006
|
Pre-XDR-TB
|
lineage2.1
|
None
|
ERR11043735
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR11082011
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR23862159
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR21709859
|
HR-TB
|
lineage2.2.1
|
None
|
ERR12118001
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR16088406
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR25206965
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28351649
|
HR-TB
|
lineage2.2.1
|
None
|
ERR13261956
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR16088511
|
Other
|
lineage4.1.2.1
|
None
|
ERR5866420
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13291970
|
Sensitive
|
lineage4.1.2.1
|
None
|
ERR5866350
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29539124
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR5153605
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR12385620
|
Sensitive
|
lineage4.3.4.1
|
None
|
ERR161147
|
HR-TB
|
lineage4.3.4.2.1
|
mw
|
SRR1173380
|
Pre-XDR-TB
|
lineage2.2;lineage3
|
None
|
ERR4832063
|
HR-TB
|
lineage2.2.1
|
vn
|
ERR2843519
|
HR-TB
|
lineage2.2.1.1
|
None
|
SRR22249732
|
MDR-TB
|
lineage2.2.1
|
None
|
SAMN02403592
|
MDR-TB
|
lineage4.8.1
|
za
|
SRR786397
|
MDR-TB
|
lineage3
|
None
|
SRR1172311
|
MDR-TB
|
lineage4.8.1
|
None
|
SRR069945
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1049608
|
Pre-XDR-TB
|
lineage2.2.1;lineage3
|
None
|
SRR28351322
|
Pre-XDR-TB
|
lineage3
|
None
|
SRR28393485
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28498382
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR28044868
|
HR-TB
|
lineage3
|
None
|
SRR27069431
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28351472
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5865755
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SAMN03246351
|
MDR-TB
|
lineage2.2.1
|
cn
|
SRR28351409
|
MDR-TB
|
lineage4.2.1
|
None
|
SRR28351656
|
MDR-TB
|
lineage4.2.1
|
None
|
ERR2516749
|
MDR-TB
|
lineage2.2.1
|
gb
|
SRR28741153
|
MDR-TB
|
lineage4.5
|
None
|
ERR13262023
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR25207010
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR266521
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4810481
|
Pre-XDR-TB
|
lineage2.2.1
|
cn
|
ERR768036
|
Sensitive
|
lineage2.2.1
|
th
|
ERR7911276
|
MDR-TB
|
lineage2.2.1
|
vn
|
SRR22461652
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR8700386
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR10748167
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR1173800
|
Pre-XDR-TB
|
lineage2.2.1;lineage3
|
None
|
SRR10380106
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR6824587
|
MDR-TB
|
lineage2.2.1
|
cn
|
ERR13290720
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4831176
|
Sensitive
|
lineage4.7
|
de
|
ERR4831931
|
MDR-TB
|
lineage2.2.1
|
vn
|
SRR18911597
|
Sensitive
|
lineage2.2.1
|
None
|
SRR5067250
|
Sensitive
|
lineage2.2.1
|
vn
|
SRR1172260
|
MDR-TB
|
lineage4.8.1
|
None
|
SRR28045861
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5865283
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR11775515
|
MDR-TB
|
lineage4.8.1
|
None
|
ERR11773833
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR11773780
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR2510440
|
MDR-TB
|
lineage4.9
|
pk
|
ERR13439884
|
HR-TB
|
lineage2.2.1
|
None
|
ERR13439905
|
HR-TB
|
lineage2.2.1
|
None
|
ERR11811390
|
HR-TB
|
lineage2.2.1
|
None
|
ERR13291123
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR16088279
|
Other
|
lineage2.2.1
|
None
|
SRR29539010
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR16088214
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29538937
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29538927
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29539049
|
Sensitive
|
lineage4.8
|
None
|
SRR29772769
|
MDR-TB
|
lineage3
|
None
|
SRR28741145
|
MDR-TB
|
lineage4.5
|
None
|
SRR30180400
|
MDR-TB
|
lineage2.2.2
|
None
|
SRR1013562
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR11043505
|
MDR-TB
|
lineage4.2.2.1;lineage5
|
None
|
ERR11049984
|
Other
|
lineage4.5
|
None
|
ERR4798055
|
MDR-TB
|
lineage4.3
|
in
|
ERR5866134
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1163392
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1723998
|
MDR-TB
|
lineage4.4
|
cn
|
SRR28351648
|
MDR-TB
|
lineage2.2.1;lineage4.2.1
|
None
|
ERR5866230
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR15014678
|
MDR-TB
|
lineage2.2.1.1
|
None
|
SRR1140589
|
Pre-XDR-TB
|
lineage3
|
None
|
SRR15368748
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1723773
|
Sensitive
|
lineage2.2.1
|
cn
|
ERR10868185
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR26399731
|
HR-TB
|
lineage2.2.1
|
None
|
SRR7646001
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR25515426
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1048862
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR13286125
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR25207164
|
MDR-TB
|
lineage2.2.1
|
None
|