Run ID: ERR2510482
Sample name:
Date: 31-03-2023 18:46:06
Number of reads: 811362
Percentage reads mapped: 99.67
Strain: lineage4.9
Drug-resistance: MDR-TB
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.9 | Euro-American (H37Rv-like) | T1 | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
rpoB | 761155 | p.Ser450Leu | missense_variant | 1.0 | rifampicin |
rpsL | 781687 | p.Lys43Arg | missense_variant | 1.0 | streptomycin |
katG | 2155168 | p.Ser315Thr | missense_variant | 1.0 | isoniazid |
pncA | 2289081 | p.Pro54Leu | missense_variant | 1.0 | pyrazinamide |
embB | 4247429 | p.Met306Val | missense_variant | 1.0 | ethambutol |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
mshA | 576400 | c.1053C>T | synonymous_variant | 1.0 |
rpoB | 759982 | p.Ile59Asn | missense_variant | 0.1 |
rpoB | 761461 | p.Arg552Leu | missense_variant | 0.97 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
PPE35 | 2169091 | p.Val508Leu | missense_variant | 0.18 |
PPE35 | 2169483 | p.Ala377Val | missense_variant | 0.11 |
PPE35 | 2170048 | p.Leu189Val | missense_variant | 0.61 |
PPE35 | 2170053 | p.Thr187Ser | missense_variant | 0.56 |
Rv1979c | 2222278 | p.Gly296Glu | missense_variant | 0.12 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
ribD | 2987001 | p.Val55Ile | missense_variant | 0.12 |
Rv2752c | 3064708 | p.Arg495Gln | missense_variant | 0.1 |
Rv2752c | 3064876 | p.Ser439Phe | missense_variant | 1.0 |
ald | 3087367 | p.Ala183Val | missense_variant | 1.0 |
Rv3083 | 3448961 | c.462delC | frameshift_variant | 0.18 |
rpoA | 3877536 | c.972C>T | synonymous_variant | 1.0 |
embA | 4244549 | c.1317C>T | synonymous_variant | 0.17 |
embB | 4246548 | p.Pro12Gln | missense_variant | 0.12 |
embB | 4246555 | c.42G>C | synonymous_variant | 0.14 |
embB | 4246556 | p.Ala15Pro | missense_variant | 0.13 |
ubiA | 4269124 | p.Ala237Val | missense_variant | 1.0 |
whiB6 | 4338307 | p.Ala72Gly | missense_variant | 1.0 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |