Rv2043c - p.Pro54Leu
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
0 Sensitive
0 RR-TB
4 HR-TB
132 MDR-TB
96 Pre-XDR-TB
6 XDR-TB
3 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage2.2.1;lineage4 | 1 |
| lineage2.2.1 | 69 |
| lineage3 | 5 |
| lineage4.3.4.2 | 15 |
| lineage2.2.1;lineage4.2.1 | 2 |
| lineage1.2.1.2.1 | 2 |
| lineage4.1.3 | 6 |
| lineage4 | 2 |
| lineage2.2.1.1 | 13 |
| lineage4.1.1.3 | 8 |
| lineage2.2.2 | 6 |
| lineage4.1.1.2 | 24 |
| lineage4.3.3 | 1 |
| lineage4.9 | 51 |
| lineage4.3.2 | 10 |
| lineage4.3.4.1 | 3 |
| lineage1.1.1 | 1 |
| lineage2.2.2;lineage4.9 | 2 |
| lineage4.1.1.1 | 1 |
| lineage4.1.2.1 | 2 |
| lineage3.1 | 1 |
| lineage4.8 | 4 |
| lineage4.3.4.2.1 | 1 |
| lineage4.1 | 1 |
| lineage3;lineage4.8 | 1 |
| lineage2.2.1;lineage4.8 | 1 |
| lineage4.2.1 | 2 |
| lineage6.2.3 | 1 |
| lineage3;lineage4.9 | 2 |
| lineage4.5;lineage4.9 | 1 |
| lineage4.1.2.1;lineage4.3.3 | 1 |
| lineage2.2.1;lineage4.9 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 241 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR28351223 | MDR-TB | lineage2.2.1;lineage4 | None | ERR11773792 | Pre-XDR-TB | lineage2.2.1 | None | ERR4276905 | MDR-TB | lineage2.2.1 | None | ERR3132095 | MDR-TB | lineage3 | None | ERR2653123 | Pre-XDR-TB | lineage4.3.4.2 | None | ERR10762342 | Pre-XDR-TB | lineage2.2.1;lineage4.2.1 | None | SRR28393537 | MDR-TB | lineage4.3.4.2 | None | SRR13232608 | XDR-TB | lineage2.2.1 | None | SRR26937088 | MDR-TB | lineage2.2.1 | None | ERR13266758 | Pre-XDR-TB | lineage3 | None | ERR3256112 | MDR-TB | lineage1.2.1.2.1 | ph | ERR10762394 | MDR-TB | lineage2.2.1 | None | ERR1034630 | MDR-TB | lineage4.3.4.2 | None | SRR998811 | MDR-TB | lineage4.1.3 | None | SRR998810 | MDR-TB | lineage4.1.3 | None | ERR13260594 | MDR-TB | lineage4 | None | SRR3105778 | MDR-TB | lineage2.2.1.1 | None | ERR1873392 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR26937010 | MDR-TB | lineage2.2.1 | None | ERR13284125 | MDR-TB | lineage2.2.1 | None | SRR29681255 | Pre-XDR-TB | lineage2.2.2 | None | ERR550908_ERR550906_ERR550907 | MDR-TB | lineage2.2.1 | None | SRR30034922 | MDR-TB | lineage4.1.1.2 | None | ERR11067580 | Pre-XDR-TB | lineage2.2.1.1 | None | SRR21031687 | MDR-TB | lineage2.2.1 | None | ERR13284657 | Pre-XDR-TB | lineage2.2.1 | None | SRR30034925 | MDR-TB | lineage4.1.1.2 | None | ERR11798562 | MDR-TB | lineage2.2.1 | None | SRR12062535 | Pre-XDR-TB | lineage2.2.1 | None | SRR29539008 | MDR-TB | lineage4.3.3 | None | SRR30034912 | Pre-XDR-TB | lineage4.1.1.2 | None | ERR13258005 | MDR-TB | lineage2.2.2 | None | ERR2653127 | MDR-TB | lineage4.3.4.2 | None | SRR7646015 | MDR-TB | lineage2.2.1 | None | ERR550907 | MDR-TB | lineage2.2.1 | None | SRR29289199 | Pre-XDR-TB | lineage4.9 | None | ERR2020058 | MDR-TB | lineage2.2.1.1 | None | SRR30034923 | Pre-XDR-TB | lineage4.1.1.2 | None | DRR130066 | MDR-TB | lineage2.2.2 | None | ERR13285784 | MDR-TB | lineage2.2.1 | None | ERR2600548 | MDR-TB | lineage2.2.1 | None | ERR5897082 | Pre-XDR-TB | lineage4.9 | None | SRR13232520 | Pre-XDR-TB | lineage2.2.1 | None | ERR4814778 | MDR-TB | lineage4.9 | gb | ERR3287687 | MDR-TB | lineage4.3.4.2 | None | ERR1034609 | Pre-XDR-TB | lineage4.9 | pk | ERR11043519 | MDR-TB | lineage2.2.1 | None | DRR130176 | Pre-XDR-TB | lineage2.2.2 | None | ERR12117978 | MDR-TB | lineage4.1.1.3 | None | SRR6398091 | MDR-TB | lineage2.2.1 | ca | ERR11775983 | MDR-TB | lineage1.2.1.2.1 | None | ERR8665586 | Pre-XDR-TB | lineage2.2.1 | None | ERR2706979 | MDR-TB | lineage4.3.2 | cd | ERR7910938 | MDR-TB | lineage2.2.1 | md | ERR6866771 | MDR-TB | lineage4.3.4.1 | None | ERR4553931 | Pre-XDR-TB | lineage4.3.4.2 | None | ERR2510482 | MDR-TB | lineage4.9 | None | SAMEA2533935 | MDR-TB | lineage2.2.1 | uz | SAMEA2534211 | MDR-TB | lineage2.2.1 | uz | ERR1873531 | Pre-XDR-TB | lineage4.1.1.3 | za | SRR5709789 | MDR-TB | lineage1.1.1 | th | SRR6824693 | Pre-XDR-TB | lineage2.2.1.1 | cn | SRR6824696 | Pre-XDR-TB | lineage2.2.1.1 | cn | SRR28394218 | Pre-XDR-TB | lineage4.3.4.2 | None | SRR26937006 | HR-TB | lineage2.2.1 | None | SRR16156780 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR29231657 | MDR-TB | lineage4.3.2 | None | SRR5152957 | Pre-XDR-TB | lineage2.2.1 | None | SRR6357004 | Pre-XDR-TB | lineage2.2.1 | None | SRR30034921 | XDR-TB | lineage4.1.1.2 | None | SRR28393746 | MDR-TB | lineage4.1.1.3 | None | SRR1723706 | Pre-XDR-TB | lineage2.2.1.1 | cn | SRR1723707 | Pre-XDR-TB | lineage2.2.1.1 | cn | SRR30034911 | Pre-XDR-TB | lineage4.1.1.2 | None | SRR30034919 | XDR-TB | lineage4.1.1.2 | None | ERR550842_ERR550841 | MDR-TB | lineage2.2.1 | None | ERR13265988 | Other | lineage3 | None | ERR13276131 | MDR-TB | lineage2.2.1 | None | ERR4831237 | MDR-TB | lineage2.2.1 | None | SRR30034920 | MDR-TB | lineage4.1.1.2 | None | SRR29539115 | Pre-XDR-TB | lineage2.2.1 | None | ERR551428 | MDR-TB | lineage2.2.1 | None | SRR30034929 | MDR-TB | lineage4.1.1.2 | None | SRR30034928 | MDR-TB | lineage4.1.1.2 | None | SRR30034909 | Pre-XDR-TB | lineage4.1.1.2 | None | ERR551428_ERR551429 | MDR-TB | lineage2.2.1 | None | SRR12420648 | MDR-TB | lineage2.2.1 | None | ERR13245228 | MDR-TB | lineage2.2.1 | None | SRR30034913 | Pre-XDR-TB | lineage4.1.1.2 | None | SRR24256338 | Pre-XDR-TB | lineage2.2.1 | None | ERR13258387 | Pre-XDR-TB | lineage2.2.2;lineage4.9 | None | SRR29017352 | MDR-TB | lineage4.1.1.1 | None | ERR10762478 | MDR-TB | lineage2.2.1 | None | SRR10305995 | Pre-XDR-TB | lineage2.2.1.1 | None | SRR16156791 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR29094374 | MDR-TB | lineage4.1.1.2 | None | SRR29231778 | MDR-TB | lineage4.3.2 | None | SRR9738502 | Pre-XDR-TB | lineage4.1.2.1 | None | ERR16022248 | MDR-TB | lineage4.9 | None | SRR13232547 | Pre-XDR-TB | lineage2.2.1 | None | ERR2510315 | Pre-XDR-TB | lineage4.9 | pk | SRR8552929 | Pre-XDR-TB | lineage4.9 | None | ERR2510398 | Pre-XDR-TB | lineage4.9 | pk | ERR2510580 | Pre-XDR-TB | lineage4.9 | pk | ERR15686449 | MDR-TB | lineage4.9 | None | ERR2510623 | Pre-XDR-TB | lineage3.1 | pk | ERR2510474 | MDR-TB | lineage3 | pk | ERR3335775 | Pre-XDR-TB | lineage4.9 | pk | SRR28498394 | MDR-TB | lineage2.2.1 | None | SRR29289194 | Pre-XDR-TB | lineage4.9 | None | SRR29289197 | Pre-XDR-TB | lineage4.9 | None | SRR29289198 | Pre-XDR-TB | lineage4.9 | None | ERR551816 | MDR-TB | lineage2.2.1 | None | ERR2510414 | Pre-XDR-TB | lineage4.9 | pk | ERR2510392 | Pre-XDR-TB | lineage4.9 | pk | ERR2510440 | MDR-TB | lineage4.9 | pk | SRR29289334 | MDR-TB | lineage4.9 | None | ERR688030 | Pre-XDR-TB | lineage4.9 | pk | SRR29289177 | MDR-TB | lineage4.9 | None | SRR29289196 | Pre-XDR-TB | lineage4.9 | None | ERR4797221 | Pre-XDR-TB | lineage4.8 | in | ERR4800211 | MDR-TB | lineage3 | in | SRR1049972 | MDR-TB | lineage4.1.3 | ml | ERR4798747 | MDR-TB | lineage4.8 | in | ERR13264943 | Pre-XDR-TB | lineage4.9 | None | SRR29681435 | XDR-TB | lineage2.2.1 | None | SRR9028479 | Pre-XDR-TB | lineage4.9 | None | SRR30034918 | MDR-TB | lineage4.1.1.2 | None | ERR688041 | Pre-XDR-TB | lineage4.9 | None | SRR18054786 | MDR-TB | lineage2.2.1 | None | SRR28394196 | MDR-TB | lineage4.8 | None | SRR28351631 | MDR-TB | lineage2.2.1 | None | ERR4808880 | MDR-TB | lineage4.3.4.2.1 | za | ERR4812872 | Pre-XDR-TB | lineage4.3.2 | None | ERR2706997 | MDR-TB | lineage4.3.2 | cd | ERR4812681 | MDR-TB | lineage4 | pe | ERR2707182 | MDR-TB | lineage4.3.2 | cd | ERR2707090 | MDR-TB | lineage4.3.2 | cd | ERR11050381 | Other | lineage4.1 | None | SAMEA2533513 | MDR-TB | lineage2.2.1 | uz | SAMEA2533554 | MDR-TB | lineage2.2.1 | uz | SAMEA2535290 | Pre-XDR-TB | lineage2.2.1.1 | mm | SRR16156779 | Pre-XDR-TB | lineage4.1.1.3 | None | SAMEA5569880 | MDR-TB | lineage4.3.4.2 | None | SRR25827525 | Pre-XDR-TB | lineage3;lineage4.8 | None | ERR3639797 | MDR-TB | lineage2.2.1 | None | SRR5074155 | MDR-TB | lineage2.2.1 | vn | ERR550906 | MDR-TB | lineage2.2.1 | None | ERR9907698 | MDR-TB | lineage4.3.4.2 | None | ERR11044352 | MDR-TB | lineage2.2.1 | None | ERR13285706 | MDR-TB | lineage2.2.1 | None | SRR30034917 | MDR-TB | lineage4.1.1.2 | None | ERR4799849 | Pre-XDR-TB | lineage2.2.1;lineage4.8 | in | ERR551429 | MDR-TB | lineage2.2.1 | None | ERR9029859 | MDR-TB | lineage4.3.4.2 | None | SRR14802273 | Pre-XDR-TB | lineage4.2.1 | None | SRR24256248 | MDR-TB | lineage2.2.1 | None | SRR28351227 | MDR-TB | lineage2.2.1;lineage4.2.1 | None | SRR30034926 | MDR-TB | lineage4.1.1.2 | None | SRR29231565 | MDR-TB | lineage4.3.2 | None | SRR29231732 | MDR-TB | lineage4.3.2 | None | SRR29274203 | Pre-XDR-TB | lineage4.1.2.1 | None | ERR4816878 | HR-TB | lineage4.9 | None | SRR30034927 | MDR-TB | lineage4.1.1.2 | None | ERR13260281 | MDR-TB | lineage2.2.1 | None | SRR14802054 | HR-TB | lineage4.2.1 | None | SRR20969956 | MDR-TB | lineage2.2.1 | None | SRR5535862 | MDR-TB | lineage4.3.2 | None | ERR550908 | MDR-TB | lineage2.2.1 | None | DRR130065 | Pre-XDR-TB | lineage2.2.2;lineage4.9 | None | SRR19276629 | MDR-TB | lineage4.3.4.1 | None | ERR550842 | MDR-TB | lineage2.2.1 | None | SRR30034915 | MDR-TB | lineage4.1.1.2 | None | ERR553304 | Pre-XDR-TB | lineage2.2.1.1 | None | SRR11972395 | Pre-XDR-TB | lineage2.2.1.1 | None | SRR29681485 | Pre-XDR-TB | lineage2.2.1 | None | SRR10305994 | Pre-XDR-TB | lineage2.2.1.1 | None | ERR13276234 | Pre-XDR-TB | lineage2.2.1 | None | ERR10680114 | MDR-TB | lineage6.2.3 | None | ERR3794460 | Pre-XDR-TB | lineage2.2.1 | None | SRR7654040 | HR-TB | lineage2.2.1 | None | ERR11044025 | MDR-TB | lineage4.3.4.2 | None | ERR2516508 | Pre-XDR-TB | lineage4.3.4.2 | None | SRR29017109 | Pre-XDR-TB | lineage4.3.4.2 | None | SRR30034910 | MDR-TB | lineage4.1.1.2 | None | SRR30034916 | MDR-TB | lineage4.1.1.2 | None | ERR551815_ERR551816 | MDR-TB | lineage2.2.1 | None | SRR29289308 | XDR-TB | lineage4.9 | None | SRR30034924 | Pre-XDR-TB | lineage4.1.1.2 | None | SRR29289338 | Pre-XDR-TB | lineage4.9 | None | SRR998809 | MDR-TB | lineage4.1.3 | None | ERR16022244 | MDR-TB | lineage4.9 | None | SRR29289428 | MDR-TB | lineage4.9 | None | SRR25207265 | Pre-XDR-TB | lineage2.2.1 | None | ERR11044248 | Pre-XDR-TB | lineage2.2.1 | None | ERR2510299 | Pre-XDR-TB | lineage4.9 | pk | SRR6964576 | MDR-TB | lineage4.9 | None | ERR2510558 | Pre-XDR-TB | lineage4.9 | pk | ERR2510411 | Pre-XDR-TB | lineage4.9 | pk | ERR2510340 | MDR-TB | lineage3;lineage4.9 | pk | ERR2510384 | Pre-XDR-TB | lineage4.9 | pk | SRR23310929 | MDR-TB | lineage2.2.1 | None | ERR2510434 | Pre-XDR-TB | lineage4.9 | pk | ERR2510588 | Pre-XDR-TB | lineage4.9 | pk | ERR2510873 | Pre-XDR-TB | lineage4.9 | pk | ERR2510641 | MDR-TB | lineage4.9 | pk | SRR29289206 | MDR-TB | lineage4.9 | None | ERR2510301 | MDR-TB | lineage4.9 | pk | SRR29289289 | Pre-XDR-TB | lineage4.9 | None | SRR29289291 | MDR-TB | lineage4.9 | None | ERR4829962 | MDR-TB | lineage4.9 | pk | ERR4829975 | Pre-XDR-TB | lineage4.5;lineage4.9 | pk | ERR2510879 | Pre-XDR-TB | lineage4.9 | pk | ERR4829133 | MDR-TB | lineage4.9 | pk | ERR550841 | MDR-TB | lineage2.2.1 | None | SRR16156800 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR4798883 | MDR-TB | lineage2.2.1.1 | in | ERR551815 | MDR-TB | lineage2.2.1 | None | ERR4798805 | Pre-XDR-TB | lineage4.8 | in | SRR30034914 | MDR-TB | lineage4.1.1.2 | None | ERR13276332 | MDR-TB | lineage2.2.1 | None | ERR11067565 | MDR-TB | lineage2.2.1 | None | SAMN02231179 | MDR-TB | lineage4.1.3 | None | ERR4822343 | Pre-XDR-TB | lineage2.2.2 | None | SRR9028492 | Pre-XDR-TB | lineage4.9 | None | ERR4816743 | MDR-TB | lineage4.9 | gb | ERR1034598 | Pre-XDR-TB | lineage4.9 | pk | SRR29539851 | Pre-XDR-TB | lineage4.3.4.2 | None | SRR998812 | MDR-TB | lineage4.1.3 | None | ERR3287688 | MDR-TB | lineage4.3.4.2 | pe | SRR28393367 | MDR-TB | lineage4.1.2.1;lineage4.3.3 | None | ERR5897078 | Pre-XDR-TB | lineage2.2.1;lineage4.9 | None | ERR5897084 | Pre-XDR-TB | lineage3;lineage4.9 | None | SRR29681403 | Pre-XDR-TB | lineage2.2.2 | None | ERR2510387 | MDR-TB | lineage4.9 | None | ERR2510427 | Pre-XDR-TB | lineage4.9 | None | ERR108428 | MDR-TB | lineage2.2.1 | ru | SRR26397809 | XDR-TB | lineage4.3.4.1 | None | ERR4822582 | Other | lineage2.2.1 | None | ERR4972539 | Pre-XDR-TB | lineage4.1.1.2 | None | ERR4972586 | Pre-XDR-TB | lineage4.1.1.2 | None |
|---|
