Run ID: ERR1577251
Sample name:
Date: 31-03-2023 14:39:47
Number of reads: 854925
Percentage reads mapped: 99.1
Strain: lineage2.2.1
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage2 | East-Asian | Beijing | RD105 | 1.0 |
lineage2.2 | East-Asian (Beijing) | Beijing-RD207 | RD105;RD207 | 1.0 |
lineage2.2.1 | East-Asian (Beijing) | Beijing-RD181 | RD105;RD207;RD181 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
fgd1 | 490664 | c.-119G>C | upstream_gene_variant | 0.11 |
fgd1 | 491742 | c.960T>C | synonymous_variant | 1.0 |
mshA | 575821 | c.474G>A | synonymous_variant | 0.14 |
mshA | 575907 | p.Ala187Val | missense_variant | 1.0 |
mshA | 576521 | p.Gly392Trp | missense_variant | 0.25 |
ccsA | 620625 | p.Ile245Met | missense_variant | 1.0 |
rpoC | 763031 | c.-339T>C | upstream_gene_variant | 1.0 |
rpoC | 766645 | p.Glu1092Asp | missense_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 776100 | p.Thr794Ile | missense_variant | 1.0 |
mmpL5 | 776182 | p.Asp767Asn | missense_variant | 1.0 |
mmpS5 | 779615 | c.-710C>G | upstream_gene_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
Rv1258c | 1406760 | c.580_581insC | frameshift_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1472244 | n.399C>G | non_coding_transcript_exon_variant | 0.13 |
rrs | 1473242 | n.1397C>T | non_coding_transcript_exon_variant | 0.14 |
rrl | 1474349 | n.692A>G | non_coding_transcript_exon_variant | 0.14 |
rrl | 1476172 | n.2515G>A | non_coding_transcript_exon_variant | 0.17 |
rrl | 1476403 | n.2746G>C | non_coding_transcript_exon_variant | 0.15 |
rrl | 1476471 | n.2814G>A | non_coding_transcript_exon_variant | 0.15 |
rpsA | 1834177 | c.636A>C | synonymous_variant | 1.0 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
tlyA | 1918247 | p.Arg103His | missense_variant | 0.18 |
katG | 2154724 | p.Arg463Leu | missense_variant | 1.0 |
katG | 2155818 | c.294C>T | synonymous_variant | 0.11 |
PPE35 | 2167926 | p.Leu896Ser | missense_variant | 1.0 |
PPE35 | 2170035 | p.Val193Ala | missense_variant | 0.11 |
PPE35 | 2170048 | p.Leu189Val | missense_variant | 0.71 |
PPE35 | 2170053 | p.Thr187Ser | missense_variant | 0.71 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
kasA | 2519045 | p.His311Tyr | missense_variant | 0.18 |
eis | 2714979 | c.354G>A | synonymous_variant | 0.25 |
eis | 2715068 | p.Pro89Thr | missense_variant | 0.17 |
eis | 2715577 | c.-245G>A | upstream_gene_variant | 0.15 |
folC | 2746558 | c.1041G>A | synonymous_variant | 0.18 |
thyX | 3067238 | c.708C>T | synonymous_variant | 0.13 |
thyX | 3067307 | c.639C>T | synonymous_variant | 0.2 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
fprA | 3474911 | p.Val302Ala | missense_variant | 0.11 |
fprA | 3474913 | p.Ala303Ser | missense_variant | 0.11 |
fprA | 3475316 | p.His437Arg | missense_variant | 0.17 |
Rv3236c | 3612813 | p.Thr102Ala | missense_variant | 1.0 |
fbiB | 3642673 | p.Ala380Val | missense_variant | 0.13 |
rpoA | 3878599 | c.-92C>G | upstream_gene_variant | 0.18 |
rpoA | 3878611 | c.-104C>A | upstream_gene_variant | 0.11 |
embC | 4241106 | p.Arg415Gln | missense_variant | 0.15 |
embC | 4241821 | c.1962dupT | frameshift_variant | 0.12 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embA | 4243460 | c.228C>T | synonymous_variant | 1.0 |
embB | 4247141 | p.Phe210Leu | missense_variant | 0.15 |
embB | 4247654 | p.Lys381Glu | missense_variant | 0.15 |
embB | 4247669 | p.Ala386Thr | missense_variant | 0.12 |
aftB | 4267647 | p.Asp397Gly | missense_variant | 1.0 |
aftB | 4268394 | p.Leu148Pro | missense_variant | 0.12 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
gid | 4407588 | c.615A>G | synonymous_variant | 1.0 |
gid | 4407927 | p.Glu92Asp | missense_variant | 1.0 |