Run ID: ERR2229075
Sample name:
Date: 31-03-2023 16:39:53
Number of reads: 2700310
Percentage reads mapped: 99.44
Strain: lineage4.8
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.8 | Euro-American (mainly T) | T1;T2;T3;T5 | RD219 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
mshA | 576108 | p.Ala254Gly | missense_variant | 0.27 |
mshA | 576477 | c.1131dupG | frameshift_variant | 0.17 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
fbiC | 1303747 | p.Thr273Ala | missense_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrl | 1474001 | n.344C>T | non_coding_transcript_exon_variant | 1.0 |
fabG1 | 1673380 | c.-60C>G | upstream_gene_variant | 0.17 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
PPE35 | 2167868 | c.2745A>C | synonymous_variant | 0.11 |
PPE35 | 2168728 | p.Gly629Arg | missense_variant | 1.0 |
PPE35 | 2169902 | p.Leu237Phe | missense_variant | 0.15 |
PPE35 | 2170048 | p.Leu189Val | missense_variant | 0.46 |
PPE35 | 2170053 | p.Thr187Ser | missense_variant | 0.52 |
PPE35 | 2170065 | p.Ala183Gly | missense_variant | 0.27 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
pepQ | 2860159 | p.Ala87Gly | missense_variant | 0.21 |
thyX | 3067340 | c.606G>A | synonymous_variant | 0.2 |
fbiD | 3339734 | p.Ala206Gly | missense_variant | 0.17 |
fbiD | 3339741 | c.624G>T | synonymous_variant | 0.18 |
fbiD | 3339744 | c.627A>C | synonymous_variant | 0.17 |
clpC1 | 4039645 | p.His354Asp | missense_variant | 0.15 |
clpC1 | 4039654 | p.Thr351Ser | missense_variant | 0.16 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embB | 4246544 | p.Thr11Pro | missense_variant | 0.4 |
embB | 4246548 | p.Pro12Gln | missense_variant | 0.7 |
embB | 4246555 | c.42G>C | synonymous_variant | 0.82 |
embB | 4246556 | p.Ala15Pro | missense_variant | 0.73 |
embB | 4246563 | p.Leu17Trp | missense_variant | 0.33 |
embB | 4246567 | c.54G>T | synonymous_variant | 0.38 |
embB | 4246584 | p.Arg24Pro | missense_variant | 0.27 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
Rv3083 | 3448497 | c.-6_*1408del | transcript_ablation | 1.0 |