Run ID: ERR2229367
Sample name:
Date: 31-03-2023 17:07:16
Number of reads: 1307107
Percentage reads mapped: 96.53
Strain: lineage4.8
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.8 | Euro-American (mainly T) | T1;T2;T3;T5 | RD219 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
fgd1 | 490891 | p.Val37Leu | missense_variant | 0.11 |
mshA | 576108 | p.Ala254Gly | missense_variant | 0.22 |
rpoC | 763376 | p.Asp3Tyr | missense_variant | 0.12 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 775760 | c.2721C>T | synonymous_variant | 0.12 |
mmpL5 | 775813 | p.Phe890Val | missense_variant | 0.14 |
mmpL5 | 775817 | c.2664T>C | synonymous_variant | 0.12 |
mmpL5 | 775885 | p.Ile866Val | missense_variant | 0.12 |
mmpL5 | 777119 | p.His454Gln | missense_variant | 0.15 |
mmpL5 | 777122 | c.1359C>T | synonymous_variant | 0.16 |
mmpL5 | 777128 | c.1353A>G | synonymous_variant | 0.16 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
fbiC | 1303747 | p.Thr273Ala | missense_variant | 1.0 |
fbiC | 1304963 | p.Trp678Leu | missense_variant | 0.18 |
fbiC | 1304976 | p.Lys682Asn | missense_variant | 0.17 |
Rv1258c | 1406290 | p.Val351Leu | missense_variant | 0.12 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrl | 1474001 | n.344C>T | non_coding_transcript_exon_variant | 1.0 |
fabG1 | 1673380 | c.-60C>G | upstream_gene_variant | 0.23 |
inhA | 1674798 | p.Met199Ile | missense_variant | 0.12 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
ndh | 2103020 | p.Thr8Ile | missense_variant | 0.14 |
PPE35 | 2167965 | p.Ala883Gly | missense_variant | 0.19 |
PPE35 | 2167967 | c.2646A>C | synonymous_variant | 0.19 |
PPE35 | 2168728 | p.Gly629Arg | missense_variant | 1.0 |
PPE35 | 2169902 | p.Leu237Phe | missense_variant | 0.17 |
PPE35 | 2169910 | p.Asn235Tyr | missense_variant | 0.15 |
PPE35 | 2170048 | p.Leu189Val | missense_variant | 0.66 |
PPE35 | 2170053 | p.Thr187Ser | missense_variant | 0.66 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
pncA | 2290133 | c.-892C>A | upstream_gene_variant | 0.13 |
kasA | 2518606 | c.492G>C | synonymous_variant | 0.14 |
kasA | 2518802 | p.Phe230Val | missense_variant | 0.2 |
kasA | 2518864 | c.750G>C | synonymous_variant | 0.12 |
pepQ | 2859931 | p.Leu163Pro | missense_variant | 0.14 |
Rv2752c | 3064964 | p.Ala410Ser | missense_variant | 0.12 |
thyA | 3074409 | c.63C>A | synonymous_variant | 0.14 |
fbiD | 3339744 | c.627A>C | synonymous_variant | 0.18 |
Rv3083 | 3448497 | c.-7T>A | upstream_gene_variant | 1.0 |
fprA | 3474041 | p.Gly12Ala | missense_variant | 0.11 |
alr | 3841082 | c.339G>A | synonymous_variant | 0.12 |
alr | 3841612 | c.-193_-192insC | upstream_gene_variant | 0.18 |
rpoA | 3878658 | c.-151A>C | upstream_gene_variant | 0.22 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embA | 4244821 | p.Gly530Val | missense_variant | 1.0 |
embB | 4246544 | p.Thr11Pro | missense_variant | 0.42 |
embB | 4246548 | p.Pro12Gln | missense_variant | 0.62 |
embB | 4246555 | c.42G>C | synonymous_variant | 0.67 |
embB | 4246556 | p.Ala15Pro | missense_variant | 0.67 |
embB | 4246563 | p.Leu17Trp | missense_variant | 0.25 |
embB | 4246567 | c.54G>T | synonymous_variant | 0.25 |
embB | 4247912 | p.Val467Met | missense_variant | 0.11 |
ubiA | 4269339 | c.494delG | frameshift_variant | 0.12 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 0.98 |
Rv3083 | 3448473 | c.-30_*1408del | transcript_ablation | 1.0 |