Run ID: ERR2229430
Sample name:
Date: 31-03-2023 17:11:45
Number of reads: 1407630
Percentage reads mapped: 99.18
Strain: lineage4.8
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.8 | Euro-American (mainly T) | T1;T2;T3;T5 | RD219 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
fgd1 | 491342 | p.Arg187Leu | missense_variant | 0.12 |
mshA | 576114 | p.Arg256Pro | missense_variant | 0.22 |
ccsA | 619733 | c.-158G>T | upstream_gene_variant | 0.15 |
rpoC | 766162 | p.Asp931Glu | missense_variant | 0.12 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
fbiC | 1303747 | p.Thr273Ala | missense_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrl | 1474001 | n.344C>T | non_coding_transcript_exon_variant | 1.0 |
fabG1 | 1673380 | c.-60C>G | upstream_gene_variant | 0.21 |
inhA | 1674738 | c.539delG | frameshift_variant | 0.12 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
ndh | 2102389 | c.654G>C | synonymous_variant | 0.12 |
ndh | 2102392 | c.651C>A | synonymous_variant | 0.12 |
PPE35 | 2167745 | p.Thr956Arg | missense_variant | 0.15 |
PPE35 | 2167865 | c.2748G>C | synonymous_variant | 0.13 |
PPE35 | 2167868 | c.2745A>C | synonymous_variant | 0.13 |
PPE35 | 2167965 | p.Ala883Gly | missense_variant | 0.16 |
PPE35 | 2167967 | c.2646A>C | synonymous_variant | 0.13 |
PPE35 | 2168728 | p.Gly629Arg | missense_variant | 1.0 |
PPE35 | 2169902 | c.711G>C | synonymous_variant | 0.14 |
PPE35 | 2169910 | p.Asn235Tyr | missense_variant | 0.13 |
PPE35 | 2170048 | p.Leu189Val | missense_variant | 0.43 |
PPE35 | 2170053 | p.Thr187Ser | missense_variant | 0.46 |
PPE35 | 2170147 | p.Ser156Ala | missense_variant | 0.14 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
folC | 2746594 | c.1005T>C | synonymous_variant | 0.14 |
thyX | 3067340 | c.606G>A | synonymous_variant | 0.17 |
fprA | 3475021 | p.Gly339Trp | missense_variant | 0.12 |
Rv3236c | 3612877 | c.240C>T | synonymous_variant | 0.12 |
fbiB | 3642227 | c.693A>G | synonymous_variant | 0.12 |
alr | 3841546 | c.-126C>A | upstream_gene_variant | 0.24 |
clpC1 | 4039031 | c.1674T>C | synonymous_variant | 0.12 |
clpC1 | 4039645 | p.His354Asp | missense_variant | 0.17 |
clpC1 | 4039714 | p.Tyr331His | missense_variant | 0.14 |
clpC1 | 4039730 | c.975C>G | synonymous_variant | 0.19 |
panD | 4043999 | p.Asp95Asn | missense_variant | 0.14 |
embC | 4241123 | p.Arg421Trp | missense_variant | 0.12 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embA | 4243589 | c.357C>T | synonymous_variant | 0.17 |
embA | 4244747 | c.1515T>C | synonymous_variant | 0.14 |
embB | 4246544 | p.Thr11Pro | missense_variant | 0.12 |
embB | 4246548 | p.Pro12Gln | missense_variant | 0.18 |
embB | 4246555 | c.42G>C | synonymous_variant | 0.29 |
embB | 4246556 | p.Ala15Pro | missense_variant | 0.29 |
embB | 4246563 | p.Leu17Trp | missense_variant | 0.14 |
aftB | 4268135 | c.702G>A | synonymous_variant | 0.12 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
Rv3083 | 3448507 | c.5_*1408del | frameshift_variant&stop_lost&splice_region_variant | 1.0 |