Run ID: ERR2229467
Sample name:
Date: 31-03-2023 17:14:03
Number of reads: 1826234
Percentage reads mapped: 99.45
Strain: lineage4.8
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.8 | Euro-American (mainly T) | T1;T2;T3;T5 | RD219 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
mshA | 576108 | p.Ala254Gly | missense_variant | 0.41 |
mshA | 576328 | c.981T>C | synonymous_variant | 0.14 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
fbiC | 1303747 | p.Thr273Ala | missense_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 0.99 |
rrl | 1474001 | n.344C>T | non_coding_transcript_exon_variant | 1.0 |
fabG1 | 1673380 | c.-60C>G | upstream_gene_variant | 0.18 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
PPE35 | 2168728 | p.Gly629Arg | missense_variant | 0.99 |
PPE35 | 2169902 | p.Leu237Phe | missense_variant | 0.2 |
PPE35 | 2169910 | p.Asn235Tyr | missense_variant | 0.17 |
PPE35 | 2170048 | p.Leu189Val | missense_variant | 0.13 |
PPE35 | 2170053 | p.Thr187Ser | missense_variant | 0.15 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
kasA | 2519140 | c.1026G>C | synonymous_variant | 0.16 |
kasA | 2519143 | c.1029G>C | synonymous_variant | 0.15 |
alr | 3841546 | c.-126C>A | upstream_gene_variant | 0.22 |
clpC1 | 4040144 | c.561G>C | synonymous_variant | 0.15 |
panD | 4044215 | p.Val23Ile | missense_variant | 0.12 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embB | 4247028 | p.Leu172Arg | missense_variant | 0.18 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
Rv3083 | 3448507 | c.5_*1408del | frameshift_variant&stop_lost&splice_region_variant | 1.0 |