Run ID: ERR233361
Sample name:
Date: 13-08-2022 03:08:38
Number of reads: 7161512
Percentage reads mapped: 98.28
Strain: lineage2.2.1.1
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage2 | East-Asian | Beijing | RD105 | 1.0 |
lineage2.2 | East-Asian (Beijing) | Beijing-RD207 | RD105;RD207 | 1.0 |
lineage2.2.1 | East-Asian (Beijing) | Beijing-RD181 | RD105;RD207;RD181 | 1.0 |
lineage2.2.1.1 | East-Asian (Beijing) | Beijing-RD150 | RD105;RD207;RD181;RD150 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7493 | c.192C>T | synonymous_variant | 0.13 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 7799 | c.498A>C | synonymous_variant | 0.14 |
gyrA | 8377 | p.Asp359Gly | missense_variant | 0.16 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 0.96 |
fgd1 | 491742 | c.960T>C | synonymous_variant | 1.0 |
mshA | 575309 | c.-39C>G | upstream_gene_variant | 0.29 |
mshA | 575907 | p.Ala187Val | missense_variant | 1.0 |
ccsA | 620625 | p.Ile245Met | missense_variant | 1.0 |
rpoC | 763031 | c.-339T>C | upstream_gene_variant | 1.0 |
rpoC | 764725 | p.Phe452Leu | missense_variant | 0.22 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 776100 | p.Thr794Ile | missense_variant | 1.0 |
mmpL5 | 776182 | p.Asp767Asn | missense_variant | 1.0 |
mmpS5 | 779615 | c.-710C>G | upstream_gene_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
Rv1258c | 1406750 | c.591C>A | synonymous_variant | 0.17 |
Rv1258c | 1406760 | c.580_581insC | frameshift_variant | 1.0 |
embR | 1417136 | p.Ser71Ile | missense_variant | 0.13 |
embR | 1417233 | c.115C>T | synonymous_variant | 0.16 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1473206 | n.1361G>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1473360 | n.1515T>G | non_coding_transcript_exon_variant | 0.3 |
rrl | 1475332 | n.1675G>T | non_coding_transcript_exon_variant | 0.11 |
fabG1 | 1673449 | p.Thr4Pro | missense_variant | 0.24 |
inhA | 1674892 | p.Asn231Asp | missense_variant | 0.2 |
rpsA | 1834177 | c.636A>C | synonymous_variant | 1.0 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
tlyA | 1918069 | p.Thr44Pro | missense_variant | 0.33 |
ndh | 2102540 | p.Ala168Gly | missense_variant | 0.17 |
katG | 2154724 | p.Arg463Leu | missense_variant | 1.0 |
katG | 2155365 | c.747C>G | synonymous_variant | 0.25 |
katG | 2156141 | c.-30C>G | upstream_gene_variant | 1.0 |
PPE35 | 2167871 | c.2742G>C | synonymous_variant | 0.15 |
PPE35 | 2167926 | p.Leu896Ser | missense_variant | 1.0 |
PPE35 | 2169379 | p.Phe412Val | missense_variant | 0.17 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
pncA | 2290023 | c.-782A>C | upstream_gene_variant | 0.26 |
kasA | 2518891 | c.777C>A | synonymous_variant | 0.14 |
eis | 2714366 | p.Val323Leu | missense_variant | 0.25 |
eis | 2714846 | p.Val163Ile | missense_variant | 1.0 |
ahpC | 2725954 | c.-239C>T | upstream_gene_variant | 0.16 |
ahpC | 2726550 | p.Gln120Lys | missense_variant | 0.15 |
folC | 2746186 | c.1413G>C | synonymous_variant | 0.17 |
Rv2752c | 3065265 | c.927C>G | synonymous_variant | 0.16 |
thyX | 3067995 | c.-50A>C | upstream_gene_variant | 0.15 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
fbiD | 3339550 | p.Gly145Trp | missense_variant | 0.21 |
Rv3083 | 3448929 | p.Tyr142* | stop_gained | 0.18 |
Rv3083 | 3449058 | p.Ser185Arg | missense_variant | 0.24 |
Rv3083 | 3449673 | p.Tyr390* | stop_gained | 0.16 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
fprA | 3474601 | p.Arg199Gly | missense_variant | 0.2 |
fprA | 3475280 | p.Val425Gly | missense_variant | 0.23 |
fprA | 3475308 | c.1302C>G | synonymous_variant | 0.24 |
Rv3236c | 3612813 | p.Thr102Ala | missense_variant | 1.0 |
fbiA | 3641411 | p.Val290Gly | missense_variant | 0.19 |
fbiB | 3641955 | p.Gly141Arg | missense_variant | 0.15 |
rpoA | 3878641 | c.-135delG | upstream_gene_variant | 0.22 |
ddn | 3987013 | p.Gly57Ala | missense_variant | 0.14 |
ddn | 3987025 | p.Val61Gly | missense_variant | 0.13 |
clpC1 | 4039363 | p.Ala448Pro | missense_variant | 0.14 |
clpC1 | 4039932 | p.Gly258Val | missense_variant | 0.26 |
clpC1 | 4040738 | c.-34G>T | upstream_gene_variant | 0.22 |
panD | 4043991 | c.291G>C | synonymous_variant | 1.0 |
embC | 4241056 | c.1194C>G | synonymous_variant | 0.14 |
embC | 4241456 | p.Ala532Pro | missense_variant | 0.25 |
embC | 4241783 | p.Trp641Gly | missense_variant | 0.27 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embC | 4242822 | p.Val987Gly | missense_variant | 0.2 |
embA | 4243460 | c.228C>T | synonymous_variant | 1.0 |
embA | 4243977 | p.Ala249Pro | missense_variant | 0.21 |
embA | 4244375 | c.1143C>G | synonymous_variant | 0.19 |
embA | 4246423 | p.Val1064Gly | missense_variant | 0.22 |
embB | 4248115 | c.1602C>T | synonymous_variant | 1.0 |
embB | 4248725 | p.Ser738Ala | missense_variant | 0.2 |
aftB | 4267647 | p.Asp397Gly | missense_variant | 1.0 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
gid | 4407588 | c.615A>G | synonymous_variant | 0.98 |
gid | 4407927 | p.Glu92Asp | missense_variant | 1.0 |