TB-Profiler result

Run: ERR234229
Summary

Run ID: ERR234229

Sample name:

Date: 13-08-2022 03:05:29

Number of reads: 4249893

Percentage reads mapped: 99.42

Strain: lineage4.5

Drug-resistance: Other

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.5 Euro-American H;T RD122 0.99
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
gid 4408087 c.115delC frameshift_variant 1.0 streptomycin
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrA 7362 p.Glu21Gln missense_variant 1.0
gyrA 7585 p.Ser95Thr missense_variant 1.0
gyrA 7892 c.591G>A synonymous_variant 0.99
gyrA 9304 p.Gly668Asp missense_variant 0.99
ccsA 620029 c.139C>T synonymous_variant 1.0
ccsA 620819 p.Val310Ala missense_variant 1.0
rpoC 766632 p.Val1088Gly missense_variant 0.22
mmpL5 775639 p.Ile948Val missense_variant 1.0
rpsL 781395 c.-165T>C upstream_gene_variant 1.0
embR 1417525 c.-178G>A upstream_gene_variant 0.99
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
tlyA 1917972 c.33A>G synonymous_variant 1.0
PPE35 2168097 p.Val839Gly missense_variant 0.99
PPE35 2169523 p.Ala364Thr missense_variant 1.0
PPE35 2169866 c.747G>C synonymous_variant 0.22
PPE35 2170568 p.Ile15Met missense_variant 1.0
Rv1979c 2223293 c.-129A>G upstream_gene_variant 1.0
eis 2714366 p.Val323Leu missense_variant 0.16
eis 2715424 c.-92C>G upstream_gene_variant 0.16
thyX 3067954 c.-9G>A upstream_gene_variant 1.0
thyA 3073806 c.666C>G synonymous_variant 0.25
thyA 3073979 p.Gln165* stop_gained 1.0
fbiD 3339273 c.156T>G synonymous_variant 0.27
fbiD 3339734 p.Ala206Gly missense_variant 0.17
fprA 3473996 c.-11_-10insA upstream_gene_variant 1.0
Rv3236c 3611992 c.1125T>G synonymous_variant 0.33
fbiB 3642772 p.Asp413Ala missense_variant 0.4
clpC1 4038318 p.Pro796Leu missense_variant 1.0
clpC1 4038857 c.1848C>A synonymous_variant 0.2
clpC1 4039932 p.Gly258Val missense_variant 0.19
embC 4242476 p.Pro872Ala missense_variant 0.23
embA 4242643 c.-590C>T upstream_gene_variant 1.0
embC 4242822 p.Val987Gly missense_variant 0.3
whiB6 4338595 c.-75delG upstream_gene_variant 1.0