Run ID: ERR2513512
Sample name:
Date: 31-03-2023 19:43:45
Number of reads: 951492
Percentage reads mapped: 99.66
Strain: lineage4.6
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.6 | Euro-American | T;LAM | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrB | 7200 | p.Glu654Ala | missense_variant | 1.0 |
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 8266 | p.Ala322Glu | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
fgd1 | 491349 | c.567T>C | synonymous_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
fbiC | 1304850 | c.1920C>T | synonymous_variant | 0.43 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1472150 | n.305T>A | non_coding_transcript_exon_variant | 0.2 |
rrs | 1472160 | n.315C>T | non_coding_transcript_exon_variant | 0.2 |
rrs | 1472225 | n.380C>G | non_coding_transcript_exon_variant | 0.25 |
rrl | 1474440 | n.783T>C | non_coding_transcript_exon_variant | 0.67 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
ndh | 2103225 | c.-183A>C | upstream_gene_variant | 0.23 |
PPE35 | 2170135 | c.475_477delTCG | conservative_inframe_deletion | 1.0 |
Rv1979c | 2222525 | p.Gly214Ser | missense_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
Rv3083 | 3449199 | c.696C>T | synonymous_variant | 0.12 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
Rv3236c | 3612356 | c.760delG | frameshift_variant | 0.11 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embA | 4244779 | p.Ser516Tyr | missense_variant | 0.12 |
aftB | 4268808 | p.Val10Glu | missense_variant | 0.14 |
whiB6 | 4338325 | p.Ala66Val | missense_variant | 1.0 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
gid | 4407554 | p.Arg217Trp | missense_variant | 1.0 |