Run ID: ERR2514962
Sample name:
Date: 31-03-2023 20:40:05
Number of reads: 885849
Percentage reads mapped: 98.16
Strain: lineage4.4
Drug-resistance: Other
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.4 | Euro-American | S;T | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
rrs | 1472733 | n.888G>A | non_coding_transcript_exon_variant | 0.4 | streptomycin |
pncA | 2288836 | p.Asp136Asn | missense_variant | 1.0 | pyrazinamide |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
fgd1 | 491367 | c.585G>A | synonymous_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 777119 | p.His454Gln | missense_variant | 0.14 |
mmpL5 | 777122 | c.1359C>T | synonymous_variant | 0.14 |
mmpL5 | 777128 | c.1353A>G | synonymous_variant | 0.14 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1472598 | n.753A>C | non_coding_transcript_exon_variant | 0.4 |
rrs | 1472599 | n.754G>T | non_coding_transcript_exon_variant | 0.4 |
rrs | 1472655 | n.810G>A | non_coding_transcript_exon_variant | 0.67 |
rrs | 1472658 | n.813G>A | non_coding_transcript_exon_variant | 0.67 |
rrs | 1472661 | n.816A>G | non_coding_transcript_exon_variant | 0.67 |
rrs | 1472670 | n.825G>T | non_coding_transcript_exon_variant | 0.67 |
rrs | 1472673 | n.828T>A | non_coding_transcript_exon_variant | 0.67 |
rrs | 1472675 | n.830T>C | non_coding_transcript_exon_variant | 0.67 |
rrs | 1472677 | n.832C>T | non_coding_transcript_exon_variant | 0.67 |
rrs | 1472681 | n.837_838delTT | non_coding_transcript_exon_variant | 0.67 |
rrs | 1472687 | n.843dupT | non_coding_transcript_exon_variant | 0.67 |
rrs | 1472690 | n.845C>A | non_coding_transcript_exon_variant | 0.67 |
rrs | 1472697 | n.852T>C | non_coding_transcript_exon_variant | 0.67 |
rrs | 1472713 | n.868T>C | non_coding_transcript_exon_variant | 0.5 |
rrs | 1472716 | n.871C>T | non_coding_transcript_exon_variant | 0.5 |
rrs | 1473035 | n.1190G>A | non_coding_transcript_exon_variant | 0.5 |
rrs | 1473055 | n.1210C>T | non_coding_transcript_exon_variant | 0.5 |
rrs | 1473056 | n.1211A>T | non_coding_transcript_exon_variant | 0.5 |
rrs | 1473066 | n.1221A>G | non_coding_transcript_exon_variant | 0.5 |
rrs | 1473080 | n.1235C>T | non_coding_transcript_exon_variant | 0.5 |
rrs | 1473081 | n.1236C>T | non_coding_transcript_exon_variant | 0.5 |
rrs | 1473252 | n.1407T>C | non_coding_transcript_exon_variant | 0.67 |
rrs | 1473259 | n.1414C>T | non_coding_transcript_exon_variant | 0.67 |
rrs | 1473316 | n.1471C>T | non_coding_transcript_exon_variant | 0.33 |
rrl | 1474249 | n.592G>T | non_coding_transcript_exon_variant | 0.67 |
rrl | 1474488 | n.831G>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474495 | n.838G>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474498 | n.841G>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474505 | n.848C>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474508 | n.851C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474516 | n.859C>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474527 | n.870T>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474537 | n.880G>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474542 | n.885A>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474636 | n.979A>C | non_coding_transcript_exon_variant | 0.67 |
rrl | 1474638 | n.981C>G | non_coding_transcript_exon_variant | 0.67 |
rrl | 1475031 | n.1374G>T | non_coding_transcript_exon_variant | 0.67 |
rrl | 1475059 | n.1403_1404insTA | non_coding_transcript_exon_variant | 0.67 |
rrl | 1475062 | n.1405A>T | non_coding_transcript_exon_variant | 0.67 |
rrl | 1475065 | n.1409_1411delCAA | non_coding_transcript_exon_variant | 0.67 |
rrl | 1475080 | n.1425_1426delCC | non_coding_transcript_exon_variant | 0.67 |
rrl | 1475090 | n.1433A>T | non_coding_transcript_exon_variant | 0.67 |
rrl | 1475104 | n.1447T>A | non_coding_transcript_exon_variant | 0.67 |
rrl | 1475114 | n.1457C>T | non_coding_transcript_exon_variant | 0.67 |
rrl | 1475124 | n.1467A>T | non_coding_transcript_exon_variant | 0.67 |
rrl | 1476506 | n.2849T>C | non_coding_transcript_exon_variant | 0.14 |
rrl | 1476515 | n.2858C>T | non_coding_transcript_exon_variant | 0.2 |
rrl | 1476524 | n.2867C>T | non_coding_transcript_exon_variant | 0.2 |
rrl | 1476525 | n.2868A>G | non_coding_transcript_exon_variant | 0.2 |
rrl | 1476539 | n.2882A>G | non_coding_transcript_exon_variant | 0.22 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
PPE35 | 2170558 | p.Ala19Pro | missense_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
eis | 2714523 | p.His270Gln | missense_variant | 1.0 |
Rv2752c | 3065715 | c.477T>C | synonymous_variant | 1.0 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
ald | 3087118 | p.Ser100Leu | missense_variant | 1.0 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
clpC1 | 4038949 | p.His586Asn | missense_variant | 0.11 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embA | 4243324 | p.Val31Ala | missense_variant | 1.0 |
embB | 4247548 | c.1035C>T | synonymous_variant | 1.0 |
aftB | 4268928 | c.-92C>T | upstream_gene_variant | 1.0 |
ubiA | 4268936 | p.Ala300Thr | missense_variant | 0.12 |
aftB | 4268956 | c.-120C>T | upstream_gene_variant | 0.12 |
aftB | 4269375 | c.-539G>A | upstream_gene_variant | 1.0 |
ubiA | 4269864 | c.-31C>G | upstream_gene_variant | 0.32 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |