Run ID: ERR2515191
Sample name:
Date: 20-10-2023 14:10:23
Number of reads: 1146743
Percentage reads mapped: 93.81
Strain: lineage2.2.1
Drug-resistance: Other
Drug | Resistance | Supporting mutations |
---|---|---|
Rifampicin | ||
Isoniazid | ||
Ethambutol | ||
Pyrazinamide | ||
Streptomycin | R | rrs n.888G>A (0.87) |
Fluoroquinolones | ||
Moxifloxacin | ||
Ofloxacin | ||
Levofloxacin | ||
Ciprofloxacin | ||
Aminoglycosides | ||
Amikacin | ||
Capreomycin | ||
Kanamycin | ||
Cycloserine | ||
Ethionamide | ||
Clofazimine | ||
Para-aminosalicylic_acid | ||
Delamanid | ||
Bedaquiline | ||
Linezolid |
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage2 | East-Asian | Beijing | RD105 | 1.0 |
lineage2.2 | East-Asian (Beijing) | Beijing-RD207 | RD105;RD207 | 1.0 |
lineage2.2.1 | East-Asian (Beijing) | Beijing-RD181 | RD105;RD207;RD181 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
rrs | 1472733 | n.888G>A | non_coding_transcript_exon_variant | 0.87 | streptomycin |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
fgd1 | 491742 | c.960T>C | synonymous_variant | 1.0 |
mshA | 575907 | p.Ala187Val | missense_variant | 1.0 |
ccsA | 620625 | p.Ile245Met | missense_variant | 1.0 |
rpoC | 763031 | c.-339T>C | upstream_gene_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 776100 | p.Thr794Ile | missense_variant | 1.0 |
mmpL5 | 776182 | p.Asp767Asn | missense_variant | 1.0 |
mmpS5 | 779615 | c.-710C>G | upstream_gene_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
Rv1258c | 1406760 | c.580_581insC | frameshift_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1472151 | n.306C>T | non_coding_transcript_exon_variant | 0.13 |
rrs | 1472518 | n.673G>T | non_coding_transcript_exon_variant | 0.47 |
rrs | 1472530 | n.685G>A | non_coding_transcript_exon_variant | 0.8 |
rrs | 1472541 | n.696T>G | non_coding_transcript_exon_variant | 0.7 |
rrs | 1472557 | n.712G>A | non_coding_transcript_exon_variant | 0.85 |
rrs | 1472570 | n.725G>A | non_coding_transcript_exon_variant | 0.85 |
rrs | 1472571 | n.726G>C | non_coding_transcript_exon_variant | 0.86 |
rrs | 1472573 | n.728C>T | non_coding_transcript_exon_variant | 0.86 |
rrs | 1472579 | n.734G>T | non_coding_transcript_exon_variant | 0.85 |
rrs | 1472581 | n.736A>T | non_coding_transcript_exon_variant | 0.87 |
rrs | 1472596 | n.751G>T | non_coding_transcript_exon_variant | 0.87 |
rrs | 1472598 | n.753A>T | non_coding_transcript_exon_variant | 0.88 |
rrs | 1472614 | n.769G>T | non_coding_transcript_exon_variant | 0.86 |
rrs | 1472616 | n.771G>A | non_coding_transcript_exon_variant | 0.88 |
rrs | 1472655 | n.810G>A | non_coding_transcript_exon_variant | 0.86 |
rrs | 1472658 | n.813G>A | non_coding_transcript_exon_variant | 0.85 |
rrs | 1472661 | n.816A>G | non_coding_transcript_exon_variant | 0.84 |
rrs | 1472665 | n.820G>A | non_coding_transcript_exon_variant | 0.83 |
rrs | 1472669 | n.824_825insTAGG | non_coding_transcript_exon_variant | 0.86 |
rrs | 1472678 | n.833_834delTTinsGCC | non_coding_transcript_exon_variant | 0.85 |
rrs | 1472684 | n.839_845delGGGATCCinsA | non_coding_transcript_exon_variant | 0.86 |
rrs | 1472695 | n.850C>T | non_coding_transcript_exon_variant | 0.84 |
rrs | 1472697 | n.852T>C | non_coding_transcript_exon_variant | 0.85 |
rrs | 1472713 | n.868T>C | non_coding_transcript_exon_variant | 0.86 |
rrs | 1472716 | n.871C>T | non_coding_transcript_exon_variant | 0.86 |
rrs | 1472742 | n.897C>T | non_coding_transcript_exon_variant | 0.87 |
rrs | 1472744 | n.899A>G | non_coding_transcript_exon_variant | 0.87 |
rrs | 1472767 | n.922G>A | non_coding_transcript_exon_variant | 0.86 |
rrs | 1472781 | n.936C>T | non_coding_transcript_exon_variant | 0.84 |
rrs | 1472793 | n.948A>T | non_coding_transcript_exon_variant | 0.83 |
rrs | 1472803 | n.958T>A | non_coding_transcript_exon_variant | 0.82 |
rrs | 1472824 | n.979T>A | non_coding_transcript_exon_variant | 0.57 |
rrs | 1472825 | n.980G>A | non_coding_transcript_exon_variant | 0.43 |
rrs | 1472826 | n.981G>A | non_coding_transcript_exon_variant | 0.44 |
rrs | 1472827 | n.982G>T | non_coding_transcript_exon_variant | 0.45 |
rrs | 1472828 | n.983T>C | non_coding_transcript_exon_variant | 0.46 |
rrs | 1472836 | n.991G>C | non_coding_transcript_exon_variant | 0.43 |
rrs | 1472837 | n.992_993insTTTG | non_coding_transcript_exon_variant | 0.42 |
rrs | 1472841 | n.996_1002delGGACGCGinsAC | non_coding_transcript_exon_variant | 0.46 |
rrs | 1472858 | n.1013_1014insA | non_coding_transcript_exon_variant | 0.46 |
rrs | 1472861 | n.1016G>A | non_coding_transcript_exon_variant | 0.28 |
rrs | 1472867 | n.1022T>C | non_coding_transcript_exon_variant | 0.42 |
rrs | 1472869 | n.1024_1025delGTinsTCGGG | non_coding_transcript_exon_variant | 0.43 |
rrs | 1472873 | n.1028C>A | non_coding_transcript_exon_variant | 0.43 |
rrs | 1472875 | n.1030T>A | non_coding_transcript_exon_variant | 0.46 |
rrs | 1472876 | n.1031G>A | non_coding_transcript_exon_variant | 0.41 |
rrs | 1472877 | n.1032T>A | non_coding_transcript_exon_variant | 0.44 |
rrs | 1472880 | n.1035_1036insA | non_coding_transcript_exon_variant | 0.46 |
rrs | 1472895 | n.1050C>T | non_coding_transcript_exon_variant | 0.46 |
rrs | 1473035 | n.1190G>A | non_coding_transcript_exon_variant | 0.15 |
rrs | 1473121 | n.1276T>C | non_coding_transcript_exon_variant | 0.12 |
rrs | 1473129 | n.1284C>T | non_coding_transcript_exon_variant | 0.13 |
rrs | 1473145 | n.1300C>T | non_coding_transcript_exon_variant | 0.13 |
rrs | 1473166 | n.1321G>A | non_coding_transcript_exon_variant | 0.13 |
rrs | 1473201 | n.1356_1357delACinsT | non_coding_transcript_exon_variant | 0.12 |
rrs | 1473206 | n.1361G>A | non_coding_transcript_exon_variant | 0.14 |
rrs | 1473226 | n.1381C>T | non_coding_transcript_exon_variant | 0.14 |
rrs | 1473249 | n.1404T>C | non_coding_transcript_exon_variant | 0.11 |
rrs | 1473259 | n.1414C>T | non_coding_transcript_exon_variant | 0.17 |
rrs | 1473276 | n.1431A>G | non_coding_transcript_exon_variant | 0.14 |
rrs | 1473301 | n.1456T>C | non_coding_transcript_exon_variant | 0.13 |
rrl | 1476225 | n.2568T>G | non_coding_transcript_exon_variant | 0.15 |
rrl | 1476229 | n.2572C>T | non_coding_transcript_exon_variant | 0.19 |
rrl | 1476251 | n.2594T>C | non_coding_transcript_exon_variant | 0.26 |
rrl | 1476260 | n.2603A>G | non_coding_transcript_exon_variant | 0.28 |
rrl | 1476268 | n.2611A>T | non_coding_transcript_exon_variant | 0.22 |
rrl | 1476275 | n.2618T>A | non_coding_transcript_exon_variant | 0.17 |
rrl | 1476279 | n.2622G>A | non_coding_transcript_exon_variant | 0.12 |
rrl | 1476280 | n.2623A>C | non_coding_transcript_exon_variant | 0.12 |
rpsA | 1834177 | c.636A>C | synonymous_variant | 1.0 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
katG | 2154724 | p.Arg463Leu | missense_variant | 1.0 |
PPE35 | 2167926 | p.Leu896Ser | missense_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
Rv3236c | 3612813 | p.Thr102Ala | missense_variant | 1.0 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embA | 4243460 | c.228C>T | synonymous_variant | 1.0 |
aftB | 4267647 | p.Asp397Gly | missense_variant | 1.0 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
gid | 4407588 | c.615A>G | synonymous_variant | 1.0 |
gid | 4407620 | p.Tyr195His | missense_variant | 1.0 |
gid | 4407927 | p.Glu92Asp | missense_variant | 1.0 |