Run ID: ERR2515368
Sample name:
Date: 31-03-2023 20:54:05
Number of reads: 666441
Percentage reads mapped: 99.64
Strain: lineage2.2.1
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage2 | East-Asian | Beijing | RD105 | 1.0 |
lineage2.2 | East-Asian (Beijing) | Beijing-RD207 | RD105;RD207 | 1.0 |
lineage2.2.1 | East-Asian (Beijing) | Beijing-RD181 | RD105;RD207;RD181 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 7777 | p.Arg159Leu | missense_variant | 0.11 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
fgd1 | 491742 | c.960T>C | synonymous_variant | 1.0 |
mshA | 575907 | p.Ala187Val | missense_variant | 1.0 |
mshA | 576168 | p.Ile274Ser | missense_variant | 0.1 |
mshA | 576501 | p.Ile385Ser | missense_variant | 0.15 |
mshA | 576662 | p.Ala439Thr | missense_variant | 0.13 |
ccsA | 620096 | p.His69Leu | missense_variant | 0.25 |
ccsA | 620625 | p.Ile245Met | missense_variant | 1.0 |
rpoC | 763031 | c.-339T>C | upstream_gene_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 776100 | p.Thr794Ile | missense_variant | 1.0 |
mmpL5 | 776182 | p.Asp767Asn | missense_variant | 1.0 |
mmpS5 | 779615 | c.-710C>G | upstream_gene_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
Rv1258c | 1406491 | p.Arg284Cys | missense_variant | 0.11 |
Rv1258c | 1406760 | c.580_581insC | frameshift_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrl | 1474949 | n.1292G>A | non_coding_transcript_exon_variant | 0.14 |
rrl | 1475077 | n.1422delT | non_coding_transcript_exon_variant | 0.13 |
rpsA | 1834177 | c.636A>C | synonymous_variant | 1.0 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
katG | 2154724 | p.Arg463Leu | missense_variant | 1.0 |
PPE35 | 2167926 | p.Leu896Ser | missense_variant | 1.0 |
PPE35 | 2168382 | p.Phe744Tyr | missense_variant | 0.12 |
PPE35 | 2170066 | p.Ala183Thr | missense_variant | 0.14 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
pncA | 2289956 | c.-715C>T | upstream_gene_variant | 0.13 |
folC | 2746283 | p.Ala439Val | missense_variant | 0.12 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
Rv3236c | 3612537 | p.Gly194Trp | missense_variant | 0.12 |
Rv3236c | 3612671 | p.Pro149Leu | missense_variant | 0.12 |
Rv3236c | 3612813 | p.Thr102Ala | missense_variant | 1.0 |
fbiB | 3642087 | p.Asn185Asp | missense_variant | 0.1 |
rpoA | 3878486 | c.21delC | frameshift_variant | 0.2 |
clpC1 | 4039099 | p.Arg536Gly | missense_variant | 0.13 |
panD | 4043902 | p.Asn127Ser | missense_variant | 0.1 |
embC | 4241543 | p.Ala561Pro | missense_variant | 0.12 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embA | 4243460 | c.228C>T | synonymous_variant | 1.0 |
embA | 4244929 | p.Thr566Arg | missense_variant | 0.11 |
embA | 4245846 | c.2616delC | frameshift_variant | 0.12 |
embB | 4247330 | p.Trp273Arg | missense_variant | 0.11 |
aftB | 4267184 | c.1653C>T | synonymous_variant | 0.12 |
aftB | 4267373 | c.1464C>T | synonymous_variant | 0.12 |
aftB | 4267647 | p.Asp397Gly | missense_variant | 1.0 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
gid | 4407588 | c.615A>G | synonymous_variant | 1.0 |
gid | 4407620 | p.Tyr195His | missense_variant | 1.0 |
gid | 4407927 | p.Glu92Asp | missense_variant | 1.0 |