Run ID: ERR2515627
Sample name:
Date: 31-03-2023 21:02:03
Number of reads: 505578
Percentage reads mapped: 99.66
Strain: lineage2.2.1
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage2 | East-Asian | Beijing | RD105 | 1.0 |
lineage2.2 | East-Asian (Beijing) | Beijing-RD207 | RD105;RD207 | 1.0 |
lineage2.2.1 | East-Asian (Beijing) | Beijing-RD181 | RD105;RD207;RD181 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
fgd1 | 491742 | c.960T>C | synonymous_variant | 1.0 |
mshA | 575907 | p.Ala187Val | missense_variant | 1.0 |
mshA | 576331 | c.984G>T | synonymous_variant | 0.11 |
ccsA | 619717 | c.-174G>T | upstream_gene_variant | 0.12 |
ccsA | 620625 | p.Ile245Met | missense_variant | 1.0 |
rpoB | 761516 | c.1710G>C | synonymous_variant | 0.17 |
rpoB | 761594 | c.1788C>A | synonymous_variant | 0.2 |
rpoC | 763031 | c.-339T>C | upstream_gene_variant | 1.0 |
rpoC | 766379 | p.Gly1004Ser | missense_variant | 0.11 |
rpoC | 766815 | p.Ile1149Thr | missense_variant | 0.11 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 776100 | p.Thr794Ile | missense_variant | 1.0 |
mmpL5 | 776182 | p.Asp767Asn | missense_variant | 1.0 |
mmpS5 | 779615 | c.-710C>G | upstream_gene_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
Rv1258c | 1406760 | c.580_581insC | frameshift_variant | 1.0 |
Rv1258c | 1406947 | p.Ala132Thr | missense_variant | 0.12 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rpsA | 1834177 | c.636A>C | synonymous_variant | 1.0 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
tlyA | 1918090 | p.Ala51Ser | missense_variant | 0.11 |
katG | 2154724 | p.Arg463Leu | missense_variant | 1.0 |
PPE35 | 2167926 | p.Leu896Ser | missense_variant | 1.0 |
PPE35 | 2168051 | c.2562G>T | synonymous_variant | 0.11 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
kasA | 2518561 | c.447T>G | synonymous_variant | 0.17 |
pepQ | 2859647 | p.Gln258Glu | missense_variant | 0.11 |
ribD | 2987326 | p.Ile163Asn | missense_variant | 0.1 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
ald | 3087304 | p.Gly162Val | missense_variant | 0.11 |
fbiD | 3339615 | c.498G>A | synonymous_variant | 0.12 |
Rv3083 | 3448961 | c.462delC | frameshift_variant | 0.11 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
whiB7 | 3568647 | p.Pro11Thr | missense_variant | 0.11 |
Rv3236c | 3612813 | p.Thr102Ala | missense_variant | 1.0 |
panD | 4044150 | c.132A>G | synonymous_variant | 0.14 |
embC | 4242606 | p.Met915Thr | missense_variant | 0.12 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embC | 4242756 | p.Ile965Asn | missense_variant | 0.12 |
embC | 4243095 | p.Gly1078Glu | missense_variant | 0.11 |
embA | 4243460 | c.228C>T | synonymous_variant | 1.0 |
embA | 4244789 | c.1557C>T | synonymous_variant | 0.12 |
embB | 4247578 | c.1065G>A | synonymous_variant | 0.12 |
aftB | 4267647 | p.Asp397Gly | missense_variant | 1.0 |
aftB | 4267828 | p.Arg337Trp | missense_variant | 0.25 |
aftB | 4268303 | c.534C>T | synonymous_variant | 0.11 |
aftB | 4268533 | c.303delG | frameshift_variant | 0.22 |
aftB | 4268776 | c.60delG | frameshift_variant | 0.18 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
gid | 4407588 | c.615A>G | synonymous_variant | 1.0 |
gid | 4407620 | p.Tyr195His | missense_variant | 1.0 |
gid | 4407927 | p.Glu92Asp | missense_variant | 1.0 |