Run ID: ERR2653021
Sample name:
Date: 31-03-2023 22:27:04
Number of reads: 937897
Percentage reads mapped: 99.21
Strain: lineage4.1.2.1
Drug-resistance: Other
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.1 | Euro-American | T;X;H | None | 0.99 |
lineage4.1.2 | Euro-American | T;H | None | 0.99 |
lineage4.1.2.1 | Euro-American (Haarlem) | T1;H1 | RD182 | 0.99 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
pncA | 2289073 | p.His57Tyr | missense_variant | 1.0 | pyrazinamide |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
fgd1 | 490641 | c.-142G>A | upstream_gene_variant | 0.12 |
fgd1 | 491591 | p.Lys270Met | missense_variant | 1.0 |
mshA | 575679 | p.Asn111Ser | missense_variant | 1.0 |
ccsA | 619850 | c.-41G>C | upstream_gene_variant | 0.12 |
rpoB | 760115 | c.309C>T | synonymous_variant | 1.0 |
rpoC | 763679 | p.Ile104Val | missense_variant | 0.12 |
rpoC | 763784 | p.Val139Phe | missense_variant | 0.12 |
rpoC | 764560 | c.1191T>C | synonymous_variant | 0.12 |
rpoC | 765150 | p.Gly594Glu | missense_variant | 1.0 |
rpoC | 766326 | p.Gly986Asp | missense_variant | 0.18 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 777449 | c.1032C>T | synonymous_variant | 0.14 |
mmpL5 | 777678 | p.Val268Ala | missense_variant | 0.12 |
mmpL5 | 777830 | c.651G>T | synonymous_variant | 0.13 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
fbiC | 1303230 | c.300C>T | synonymous_variant | 0.17 |
fbiC | 1303916 | p.Met329Thr | missense_variant | 0.17 |
fbiC | 1304140 | p.Ala404Thr | missense_variant | 0.11 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrl | 1474901 | n.1244A>C | non_coding_transcript_exon_variant | 0.11 |
rpsA | 1833449 | c.-93G>T | upstream_gene_variant | 1.0 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
ndh | 2101810 | p.Ile411Met | missense_variant | 0.12 |
ndh | 2102936 | c.105_106delGG | frameshift_variant | 0.11 |
ndh | 2103107 | c.-65G>A | upstream_gene_variant | 0.17 |
ndh | 2103185 | c.-143A>G | upstream_gene_variant | 0.12 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
kasA | 2518076 | c.-39C>T | upstream_gene_variant | 1.0 |
eis | 2714642 | p.Thr231Ala | missense_variant | 0.13 |
folC | 2746426 | c.1173G>T | synonymous_variant | 0.12 |
pepQ | 2859551 | p.Phe290Leu | missense_variant | 0.12 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
ald | 3087645 | c.828delA | frameshift_variant | 0.11 |
Rv3083 | 3449033 | p.Gly177Asp | missense_variant | 0.11 |
Rv3083 | 3449047 | p.Val182Ile | missense_variant | 0.12 |
Rv3083 | 3449968 | c.1468delC | frameshift_variant | 0.15 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
fbiA | 3641377 | p.Arg279Trp | missense_variant | 0.13 |
alr | 3841206 | p.His72Arg | missense_variant | 0.1 |
rpoA | 3878425 | p.Pro28Gln | missense_variant | 0.12 |
rpoA | 3878630 | c.-123G>C | upstream_gene_variant | 0.13 |
clpC1 | 4039213 | p.Lys498Glu | missense_variant | 0.12 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embC | 4242803 | p.Val981Leu | missense_variant | 1.0 |
embA | 4243772 | c.540A>T | synonymous_variant | 0.11 |
embB | 4246544 | p.Thr11Pro | missense_variant | 0.12 |
embB | 4246548 | p.Pro12Gln | missense_variant | 0.17 |
embB | 4246555 | c.42G>C | synonymous_variant | 0.18 |
embB | 4246556 | p.Ala15Pro | missense_variant | 0.18 |
embB | 4246563 | p.Leu17Trp | missense_variant | 0.16 |
embB | 4246567 | c.54G>T | synonymous_variant | 0.15 |
embB | 4247026 | c.513G>C | synonymous_variant | 0.14 |
embB | 4247887 | c.1374C>T | synonymous_variant | 0.11 |
embB | 4248434 | p.Ala641Thr | missense_variant | 0.12 |
embB | 4249129 | c.2616T>C | synonymous_variant | 0.12 |
aftB | 4267564 | p.Thr425Pro | missense_variant | 0.2 |
aftB | 4267988 | c.849G>A | synonymous_variant | 0.15 |
ethA | 4326020 | p.Ala485Val | missense_variant | 0.15 |
ethA | 4328334 | c.-861C>T | upstream_gene_variant | 0.13 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
gid | 4408063 | p.Arg47Gln | missense_variant | 1.0 |