Run ID: ERR3588223
Sample name:
Date: 01-04-2023 02:37:32
Number of reads: 1372403
Percentage reads mapped: 98.01
Strain: lineage4.3.1
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.3 | Euro-American (LAM) | mainly-LAM | None | 1.0 |
lineage4.3.1 | Euro-American (LAM) | LAM9 | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 0.94 |
fgd1 | 491409 | c.627G>T | synonymous_variant | 0.14 |
rpoC | 764995 | c.1626C>G | synonymous_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrl | 1476506 | n.2849T>C | non_coding_transcript_exon_variant | 0.13 |
rrl | 1476514 | n.2857C>T | non_coding_transcript_exon_variant | 0.12 |
rrl | 1476519 | n.2862C>G | non_coding_transcript_exon_variant | 0.12 |
rrl | 1476524 | n.2867C>A | non_coding_transcript_exon_variant | 0.12 |
rrl | 1476525 | n.2868A>G | non_coding_transcript_exon_variant | 0.12 |
rrl | 1476530 | n.2873C>T | non_coding_transcript_exon_variant | 0.12 |
rrl | 1476536 | n.2879G>A | non_coding_transcript_exon_variant | 0.13 |
rrl | 1476538 | n.2881A>G | non_coding_transcript_exon_variant | 0.13 |
rrl | 1476540 | n.2883C>G | non_coding_transcript_exon_variant | 0.13 |
rrl | 1476543 | n.2886G>A | non_coding_transcript_exon_variant | 0.14 |
rrl | 1476547 | n.2890C>T | non_coding_transcript_exon_variant | 0.13 |
rrl | 1476567 | n.2910C>T | non_coding_transcript_exon_variant | 0.14 |
rrl | 1476573 | n.2916A>C | non_coding_transcript_exon_variant | 0.13 |
rrl | 1476577 | n.2920T>G | non_coding_transcript_exon_variant | 0.15 |
fabG1 | 1673380 | c.-60C>G | upstream_gene_variant | 0.17 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
thyA | 3073868 | p.Thr202Ala | missense_variant | 1.0 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 0.98 |
clpC1 | 4038287 | c.2418C>T | synonymous_variant | 1.0 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
gid | 4408156 | p.Leu16Arg | missense_variant | 1.0 |