Run ID: ERR405215
Sample name:
Date: 01-04-2023 04:30:04
Number of reads: 3651569
Percentage reads mapped: 69.9
Strain: lineage2.2.1
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage2 | East-Asian | Beijing | RD105 | 0.99 |
lineage2.2 | East-Asian (Beijing) | Beijing-RD207 | RD105;RD207 | 0.99 |
lineage2.2.1 | East-Asian (Beijing) | Beijing-RD181 | RD105;RD207;RD181 | 0.99 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
fgd1 | 491742 | c.960T>C | synonymous_variant | 1.0 |
mshA | 575907 | p.Ala187Val | missense_variant | 0.98 |
ccsA | 620625 | p.Ile245Met | missense_variant | 1.0 |
rpoB | 762939 | p.Met1045Leu | missense_variant | 0.1 |
rpoC | 763031 | c.-339T>C | upstream_gene_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 776100 | p.Thr794Ile | missense_variant | 1.0 |
mmpL5 | 776182 | p.Asp767Asn | missense_variant | 0.99 |
mmpS5 | 779615 | c.-710C>G | upstream_gene_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
Rv1258c | 1406760 | c.580_581insC | frameshift_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1472713 | n.868T>C | non_coding_transcript_exon_variant | 0.22 |
rrs | 1472715 | n.870C>A | non_coding_transcript_exon_variant | 0.22 |
rrs | 1472716 | n.871C>T | non_coding_transcript_exon_variant | 0.22 |
rrs | 1472734 | n.889C>T | non_coding_transcript_exon_variant | 0.33 |
rrs | 1472741 | n.896G>A | non_coding_transcript_exon_variant | 0.32 |
rrs | 1472742 | n.897C>T | non_coding_transcript_exon_variant | 0.45 |
rrs | 1472754 | n.909G>T | non_coding_transcript_exon_variant | 0.14 |
rrs | 1472781 | n.936C>T | non_coding_transcript_exon_variant | 0.43 |
rrs | 1472793 | n.948A>T | non_coding_transcript_exon_variant | 0.43 |
rrs | 1472803 | n.958T>A | non_coding_transcript_exon_variant | 0.29 |
rrs | 1472812 | n.967A>C | non_coding_transcript_exon_variant | 0.17 |
rrl | 1475499 | n.1842C>G | non_coding_transcript_exon_variant | 0.1 |
rrl | 1475539 | n.1882A>T | non_coding_transcript_exon_variant | 0.1 |
rrl | 1475545 | n.1888T>G | non_coding_transcript_exon_variant | 0.1 |
rrl | 1475816 | n.2159C>G | non_coding_transcript_exon_variant | 0.1 |
rrl | 1476252 | n.2595T>G | non_coding_transcript_exon_variant | 0.15 |
rrl | 1476260 | n.2603A>G | non_coding_transcript_exon_variant | 0.15 |
rrl | 1476266 | n.2609G>A | non_coding_transcript_exon_variant | 0.16 |
rrl | 1476279 | n.2622G>C | non_coding_transcript_exon_variant | 0.16 |
rrl | 1476280 | n.2623A>C | non_coding_transcript_exon_variant | 0.17 |
rrl | 1476281 | n.2624T>A | non_coding_transcript_exon_variant | 0.17 |
rrl | 1476293 | n.2636C>T | non_coding_transcript_exon_variant | 0.18 |
rrl | 1476294 | n.2637A>G | non_coding_transcript_exon_variant | 0.18 |
rrl | 1476295 | n.2638C>G | non_coding_transcript_exon_variant | 0.17 |
rrl | 1476296 | n.2639C>T | non_coding_transcript_exon_variant | 0.17 |
rrl | 1476311 | n.2654G>C | non_coding_transcript_exon_variant | 0.3 |
rrl | 1476312 | n.2655T>C | non_coding_transcript_exon_variant | 0.31 |
rrl | 1476313 | n.2656G>A | non_coding_transcript_exon_variant | 0.31 |
rrl | 1476336 | n.2679C>T | non_coding_transcript_exon_variant | 0.4 |
rrl | 1476338 | n.2681C>T | non_coding_transcript_exon_variant | 0.36 |
rrl | 1476339 | n.2682G>A | non_coding_transcript_exon_variant | 0.37 |
rrl | 1476356 | n.2699C>T | non_coding_transcript_exon_variant | 0.41 |
rrl | 1476359 | n.2702C>G | non_coding_transcript_exon_variant | 0.44 |
rrl | 1476381 | n.2724G>C | non_coding_transcript_exon_variant | 0.47 |
rrl | 1476383 | n.2726T>A | non_coding_transcript_exon_variant | 0.44 |
rrl | 1476384 | n.2727G>A | non_coding_transcript_exon_variant | 0.44 |
rrl | 1476408 | n.2751G>A | non_coding_transcript_exon_variant | 0.52 |
rrl | 1476411 | n.2754G>A | non_coding_transcript_exon_variant | 0.54 |
rrl | 1476442 | n.2785T>A | non_coding_transcript_exon_variant | 0.45 |
rrl | 1476443 | n.2786G>T | non_coding_transcript_exon_variant | 0.44 |
rrl | 1476455 | n.2798C>A | non_coding_transcript_exon_variant | 0.36 |
rrl | 1476456 | n.2799A>T | non_coding_transcript_exon_variant | 0.38 |
rrl | 1476463 | n.2806C>T | non_coding_transcript_exon_variant | 0.32 |
rrl | 1476466 | n.2809C>T | non_coding_transcript_exon_variant | 0.32 |
rrl | 1476470 | n.2813C>T | non_coding_transcript_exon_variant | 0.26 |
rrl | 1476481 | n.2824T>C | non_coding_transcript_exon_variant | 0.25 |
rrl | 1476501 | n.2844C>T | non_coding_transcript_exon_variant | 0.12 |
rrl | 1476506 | n.2849T>C | non_coding_transcript_exon_variant | 0.13 |
rpsA | 1834177 | c.636A>C | synonymous_variant | 1.0 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
katG | 2154724 | p.Arg463Leu | missense_variant | 1.0 |
PPE35 | 2167926 | p.Leu896Ser | missense_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
eis | 2714526 | c.805_806delAC | frameshift_variant | 0.98 |
Rv2752c | 3065711 | p.Gly161Ser | missense_variant | 1.0 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
Rv3236c | 3612813 | p.Thr102Ala | missense_variant | 1.0 |
fbiA | 3640367 | c.-176A>G | upstream_gene_variant | 0.17 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embA | 4243460 | c.228C>T | synonymous_variant | 1.0 |
aftB | 4267647 | p.Asp397Gly | missense_variant | 1.0 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
gid | 4407588 | c.615A>G | synonymous_variant | 1.0 |
gid | 4407927 | p.Glu92Asp | missense_variant | 1.0 |