Run ID: ERR4812474
Sample name:
Date: 01-04-2023 12:05:59
Number of reads: 4554978
Percentage reads mapped: 96.68
Strain: lineage4.3.3
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.3 | Euro-American (LAM) | mainly-LAM | None | 1.0 |
lineage4.3.3 | Euro-American (LAM) | LAM;T | RD115 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 8040 | p.Gly247Ser | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
fgd1 | 491330 | p.Lys183Thr | missense_variant | 1.0 |
mshA | 576108 | p.Ala254Gly | missense_variant | 0.41 |
mshA | 576111 | p.Ala255Gly | missense_variant | 0.19 |
rpoC | 764995 | c.1626C>G | synonymous_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 777109 | p.Asn458Asp | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
atpE | 1461159 | p.Val39Ile | missense_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1472952 | n.1107T>C | non_coding_transcript_exon_variant | 0.11 |
rrs | 1472955 | n.1110C>T | non_coding_transcript_exon_variant | 0.11 |
rrs | 1473035 | n.1190G>A | non_coding_transcript_exon_variant | 0.17 |
rrs | 1473055 | n.1210C>T | non_coding_transcript_exon_variant | 0.16 |
rrs | 1473056 | n.1211A>T | non_coding_transcript_exon_variant | 0.16 |
rrs | 1473066 | n.1221A>G | non_coding_transcript_exon_variant | 0.16 |
rrs | 1473097 | n.1252G>A | non_coding_transcript_exon_variant | 0.15 |
rrs | 1473100 | n.1255G>A | non_coding_transcript_exon_variant | 0.15 |
rrs | 1473104 | n.1259C>T | non_coding_transcript_exon_variant | 0.15 |
rrs | 1473110 | n.1265T>G | non_coding_transcript_exon_variant | 0.14 |
rrs | 1473111 | n.1266A>G | non_coding_transcript_exon_variant | 0.14 |
rrs | 1473121 | n.1276T>C | non_coding_transcript_exon_variant | 0.15 |
rrs | 1473122 | n.1277T>A | non_coding_transcript_exon_variant | 0.15 |
rrs | 1473134 | n.1289T>C | non_coding_transcript_exon_variant | 0.14 |
rrs | 1473145 | n.1300C>T | non_coding_transcript_exon_variant | 0.12 |
rrl | 1474558 | n.901G>A | non_coding_transcript_exon_variant | 0.11 |
rrl | 1474583 | n.926C>T | non_coding_transcript_exon_variant | 0.12 |
rrl | 1474601 | n.944C>T | non_coding_transcript_exon_variant | 0.12 |
rrl | 1474632 | n.975G>T | non_coding_transcript_exon_variant | 0.11 |
rrl | 1474636 | n.979A>T | non_coding_transcript_exon_variant | 0.12 |
rrl | 1474637 | n.980C>T | non_coding_transcript_exon_variant | 0.12 |
rrl | 1474638 | n.981C>G | non_coding_transcript_exon_variant | 0.12 |
rrl | 1474639 | n.982G>C | non_coding_transcript_exon_variant | 0.12 |
rrl | 1475881 | n.2224T>C | non_coding_transcript_exon_variant | 0.15 |
rrl | 1475896 | n.2239A>G | non_coding_transcript_exon_variant | 0.11 |
rrl | 1475897 | n.2240T>C | non_coding_transcript_exon_variant | 0.1 |
rrl | 1475898 | n.2241A>G | non_coding_transcript_exon_variant | 0.1 |
rrl | 1475916 | n.2259C>T | non_coding_transcript_exon_variant | 0.11 |
rrl | 1476160 | n.2503T>C | non_coding_transcript_exon_variant | 0.11 |
rrl | 1476256 | n.2599A>G | non_coding_transcript_exon_variant | 0.14 |
rrl | 1476260 | n.2603A>G | non_coding_transcript_exon_variant | 0.14 |
rrl | 1476281 | n.2624T>C | non_coding_transcript_exon_variant | 0.15 |
rrl | 1476295 | n.2638C>G | non_coding_transcript_exon_variant | 0.12 |
rrl | 1476296 | n.2639C>T | non_coding_transcript_exon_variant | 0.12 |
rrl | 1476297 | n.2640C>G | non_coding_transcript_exon_variant | 0.12 |
rrl | 1476298 | n.2641C>G | non_coding_transcript_exon_variant | 0.12 |
rrl | 1476300 | n.2643G>T | non_coding_transcript_exon_variant | 0.12 |
rrl | 1476301 | n.2644A>T | non_coding_transcript_exon_variant | 0.12 |
rrl | 1476309 | n.2652G>C | non_coding_transcript_exon_variant | 0.12 |
rrl | 1476311 | n.2654G>C | non_coding_transcript_exon_variant | 0.13 |
rrl | 1476337 | n.2680C>T | non_coding_transcript_exon_variant | 0.21 |
rrl | 1476359 | n.2702C>G | non_coding_transcript_exon_variant | 0.29 |
rrl | 1476381 | n.2724G>C | non_coding_transcript_exon_variant | 0.28 |
rrl | 1476428 | n.2771C>T | non_coding_transcript_exon_variant | 0.26 |
rrl | 1476466 | n.2809C>T | non_coding_transcript_exon_variant | 0.17 |
rrl | 1476506 | n.2849T>C | non_coding_transcript_exon_variant | 0.13 |
rpsA | 1834836 | p.Met432Thr | missense_variant | 1.0 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
PPE35 | 2168022 | p.Leu864Arg | missense_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
kasA | 2518919 | p.Gly269Ser | missense_variant | 1.0 |
thyA | 3073868 | p.Thr202Ala | missense_variant | 1.0 |
thyA | 3073956 | c.516G>C | synonymous_variant | 1.0 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
clpC1 | 4038287 | c.2418C>T | synonymous_variant | 1.0 |
clpC1 | 4038586 | p.Pro707Ser | missense_variant | 1.0 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embB | 4246584 | p.Arg24Pro | missense_variant | 0.14 |
embB | 4247028 | p.Leu172Arg | missense_variant | 0.19 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
gid | 4407720 | c.483C>G | synonymous_variant | 1.0 |
gid | 4408156 | p.Leu16Arg | missense_variant | 1.0 |