Run ID: ERR4814901
Sample name:
Date: 20-10-2023 07:41:17
Number of reads: 1438775
Percentage reads mapped: 96.81
Strain: lineage2.2.1
Drug-resistance: Other
Drug | Resistance | Supporting mutations |
---|---|---|
Rifampicin | ||
Isoniazid | ||
Ethambutol | ||
Pyrazinamide | ||
Streptomycin | ||
Fluoroquinolones | R | gyrA p.Asp94Gly (1.00) |
Moxifloxacin | R | gyrA p.Asp94Gly (1.00) |
Ofloxacin | R | gyrA p.Asp94Gly (1.00) |
Levofloxacin | R | gyrA p.Asp94Gly (1.00) |
Ciprofloxacin | R | gyrA p.Asp94Gly (1.00) |
Aminoglycosides | ||
Amikacin | ||
Capreomycin | ||
Kanamycin | ||
Cycloserine | ||
Ethionamide | ||
Clofazimine | ||
Para-aminosalicylic_acid | ||
Delamanid | ||
Bedaquiline | ||
Linezolid |
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage2 | East-Asian | Beijing | RD105 | 1.0 |
lineage2.2 | East-Asian (Beijing) | Beijing-RD207 | RD105;RD207 | 1.0 |
lineage2.2.1 | East-Asian (Beijing) | Beijing-RD181 | RD105;RD207;RD181 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
gyrA | 7582 | p.Asp94Gly | missense_variant | 1.0 | ofloxacin, moxifloxacin, levofloxacin, fluoroquinolones, ciprofloxacin |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
fgd1 | 491742 | c.960T>C | synonymous_variant | 1.0 |
mshA | 575907 | p.Ala187Val | missense_variant | 1.0 |
ccsA | 620625 | p.Ile245Met | missense_variant | 1.0 |
rpoC | 763031 | c.-339T>C | upstream_gene_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 776100 | p.Thr794Ile | missense_variant | 1.0 |
mmpL5 | 776182 | p.Asp767Asn | missense_variant | 1.0 |
mmpL5 | 777119 | p.His454Gln | missense_variant | 0.21 |
mmpL5 | 777122 | c.1359C>T | synonymous_variant | 0.23 |
mmpS5 | 779615 | c.-710C>G | upstream_gene_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
Rv1258c | 1406760 | c.580_581insC | frameshift_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1472713 | n.868T>C | non_coding_transcript_exon_variant | 0.65 |
rrs | 1472716 | n.871C>T | non_coding_transcript_exon_variant | 0.65 |
rrs | 1472744 | n.899A>G | non_coding_transcript_exon_variant | 0.65 |
rrs | 1472781 | n.936C>T | non_coding_transcript_exon_variant | 0.56 |
rrs | 1472793 | n.948A>T | non_coding_transcript_exon_variant | 0.5 |
rrs | 1473035 | n.1190G>A | non_coding_transcript_exon_variant | 0.53 |
rrs | 1473055 | n.1210C>T | non_coding_transcript_exon_variant | 0.45 |
rrs | 1473056 | n.1211A>T | non_coding_transcript_exon_variant | 0.45 |
rrs | 1473066 | n.1221A>G | non_coding_transcript_exon_variant | 0.43 |
rrs | 1473088 | n.1243A>G | non_coding_transcript_exon_variant | 0.37 |
rrs | 1473093 | n.1248C>T | non_coding_transcript_exon_variant | 0.41 |
rrs | 1473100 | n.1255G>A | non_coding_transcript_exon_variant | 0.47 |
rrs | 1473104 | n.1259C>T | non_coding_transcript_exon_variant | 0.47 |
rrs | 1473110 | n.1265T>G | non_coding_transcript_exon_variant | 0.47 |
rrs | 1473111 | n.1266A>G | non_coding_transcript_exon_variant | 0.47 |
rrs | 1473121 | n.1276T>C | non_coding_transcript_exon_variant | 0.44 |
rrs | 1473145 | n.1300C>T | non_coding_transcript_exon_variant | 0.37 |
rrs | 1473252 | n.1407T>C | non_coding_transcript_exon_variant | 0.33 |
rrs | 1473259 | n.1414C>T | non_coding_transcript_exon_variant | 0.33 |
rpsA | 1834177 | c.636A>C | synonymous_variant | 1.0 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
katG | 2154724 | p.Arg463Leu | missense_variant | 1.0 |
PPE35 | 2167926 | p.Leu896Ser | missense_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
Rv2752c | 3065694 | c.498G>C | synonymous_variant | 1.0 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
Rv3236c | 3612813 | p.Thr102Ala | missense_variant | 1.0 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embA | 4243460 | c.228C>T | synonymous_variant | 0.99 |
embA | 4246486 | p.Gly1085Val | missense_variant | 1.0 |
aftB | 4267647 | p.Asp397Gly | missense_variant | 1.0 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
gid | 4407588 | c.615A>G | synonymous_variant | 1.0 |
gid | 4407927 | p.Glu92Asp | missense_variant | 1.0 |