Run ID: ERR4815299
Sample name:
Date: 01-04-2023 13:47:25
Number of reads: 6668392
Percentage reads mapped: 98.44
Strain: lineage4.8
Drug-resistance: Other
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.8 | Euro-American (mainly T) | T1;T2;T3;T5 | RD219 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
rrs | 1472733 | n.888G>A | non_coding_transcript_exon_variant | 0.67 | streptomycin |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1472150 | n.305T>A | non_coding_transcript_exon_variant | 0.14 |
rrs | 1472172 | n.327T>C | non_coding_transcript_exon_variant | 0.17 |
rrs | 1472251 | n.406G>A | non_coding_transcript_exon_variant | 0.13 |
rrs | 1472498 | n.653C>A | non_coding_transcript_exon_variant | 0.18 |
rrs | 1472507 | n.662C>G | non_coding_transcript_exon_variant | 0.25 |
rrs | 1472517 | n.672T>A | non_coding_transcript_exon_variant | 0.33 |
rrs | 1472518 | n.673G>T | non_coding_transcript_exon_variant | 0.33 |
rrs | 1472530 | n.685G>A | non_coding_transcript_exon_variant | 0.5 |
rrs | 1472537 | n.692C>T | non_coding_transcript_exon_variant | 0.53 |
rrs | 1472544 | n.699C>A | non_coding_transcript_exon_variant | 0.65 |
rrs | 1472545 | n.700A>T | non_coding_transcript_exon_variant | 0.65 |
rrs | 1472566 | n.721G>A | non_coding_transcript_exon_variant | 0.73 |
rrs | 1472571 | n.726G>C | non_coding_transcript_exon_variant | 0.73 |
rrs | 1472579 | n.734G>T | non_coding_transcript_exon_variant | 0.69 |
rrs | 1472580 | n.735C>T | non_coding_transcript_exon_variant | 0.14 |
rrs | 1472581 | n.736A>T | non_coding_transcript_exon_variant | 0.76 |
rrs | 1472598 | n.753A>C | non_coding_transcript_exon_variant | 0.76 |
rrs | 1472599 | n.754G>T | non_coding_transcript_exon_variant | 0.76 |
rrs | 1472616 | n.771G>A | non_coding_transcript_exon_variant | 0.3 |
rrs | 1472655 | n.810G>A | non_coding_transcript_exon_variant | 0.4 |
rrs | 1472658 | n.813G>A | non_coding_transcript_exon_variant | 0.38 |
rrs | 1472661 | n.816A>G | non_coding_transcript_exon_variant | 0.35 |
rrs | 1472670 | n.825G>T | non_coding_transcript_exon_variant | 0.35 |
rrs | 1472673 | n.828T>G | non_coding_transcript_exon_variant | 0.29 |
rrs | 1472675 | n.830T>C | non_coding_transcript_exon_variant | 0.31 |
rrs | 1472677 | n.832C>T | non_coding_transcript_exon_variant | 0.31 |
rrs | 1472681 | n.837_838delTT | non_coding_transcript_exon_variant | 0.33 |
rrs | 1472687 | n.842_843insC | non_coding_transcript_exon_variant | 0.33 |
rrs | 1472690 | n.845C>A | non_coding_transcript_exon_variant | 0.33 |
rrs | 1472697 | n.852T>C | non_coding_transcript_exon_variant | 0.42 |
rrs | 1472713 | n.868T>C | non_coding_transcript_exon_variant | 0.52 |
rrs | 1472716 | n.871C>T | non_coding_transcript_exon_variant | 0.54 |
rrs | 1472742 | n.897C>T | non_coding_transcript_exon_variant | 0.66 |
rrs | 1472744 | n.899A>G | non_coding_transcript_exon_variant | 0.64 |
rrs | 1472781 | n.936C>T | non_coding_transcript_exon_variant | 0.56 |
rrs | 1472790 | n.945T>C | non_coding_transcript_exon_variant | 0.1 |
rrs | 1472793 | n.948A>T | non_coding_transcript_exon_variant | 0.5 |
rrs | 1472803 | n.958T>A | non_coding_transcript_exon_variant | 0.49 |
rrs | 1472824 | n.979T>A | non_coding_transcript_exon_variant | 0.28 |
rrs | 1472827 | n.982G>T | non_coding_transcript_exon_variant | 0.13 |
rrs | 1472828 | n.983T>C | non_coding_transcript_exon_variant | 0.19 |
rrs | 1473055 | n.1210C>T | non_coding_transcript_exon_variant | 0.15 |
rrs | 1473056 | n.1211A>T | non_coding_transcript_exon_variant | 0.15 |
rrs | 1473066 | n.1221A>G | non_coding_transcript_exon_variant | 0.21 |
rrs | 1473088 | n.1243A>G | non_coding_transcript_exon_variant | 0.17 |
rrs | 1473093 | n.1248C>T | non_coding_transcript_exon_variant | 0.19 |
rrs | 1473121 | n.1276T>C | non_coding_transcript_exon_variant | 0.1 |
rrs | 1473145 | n.1300C>T | non_coding_transcript_exon_variant | 0.16 |
rrs | 1473166 | n.1321G>A | non_coding_transcript_exon_variant | 0.11 |
rrs | 1473252 | n.1407T>C | non_coding_transcript_exon_variant | 0.11 |
rrs | 1473259 | n.1414C>T | non_coding_transcript_exon_variant | 0.11 |
rrl | 1473543 | n.-115C>A | upstream_gene_variant | 1.0 |
rrl | 1474001 | n.344C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474044 | n.387C>T | non_coding_transcript_exon_variant | 0.5 |
rrl | 1474488 | n.831G>T | non_coding_transcript_exon_variant | 0.44 |
rrl | 1474495 | n.838G>A | non_coding_transcript_exon_variant | 0.4 |
rrl | 1474498 | n.841G>T | non_coding_transcript_exon_variant | 0.45 |
rrl | 1474505 | n.848C>G | non_coding_transcript_exon_variant | 0.42 |
rrl | 1474508 | n.851C>T | non_coding_transcript_exon_variant | 0.42 |
rrl | 1474516 | n.859C>A | non_coding_transcript_exon_variant | 0.45 |
rrl | 1474527 | n.870T>C | non_coding_transcript_exon_variant | 0.42 |
rrl | 1474537 | n.880G>A | non_coding_transcript_exon_variant | 0.46 |
rrl | 1474542 | n.885A>G | non_coding_transcript_exon_variant | 0.43 |
rrl | 1474558 | n.901G>A | non_coding_transcript_exon_variant | 0.36 |
rrl | 1474584 | n.927C>T | non_coding_transcript_exon_variant | 0.29 |
rrl | 1476030 | n.2373A>G | non_coding_transcript_exon_variant | 0.2 |
rrl | 1476033 | n.2376T>G | non_coding_transcript_exon_variant | 0.2 |
rrl | 1476035 | n.2378G>T | non_coding_transcript_exon_variant | 0.2 |
rrl | 1476040 | n.2383C>T | non_coding_transcript_exon_variant | 0.2 |
rrl | 1476044 | n.2387T>G | non_coding_transcript_exon_variant | 0.15 |
rrl | 1476046 | n.2389G>T | non_coding_transcript_exon_variant | 0.15 |
rrl | 1476049 | n.2392C>T | non_coding_transcript_exon_variant | 0.15 |
rrl | 1476353 | n.2696G>T | non_coding_transcript_exon_variant | 0.12 |
rrl | 1476358 | n.2701T>C | non_coding_transcript_exon_variant | 0.11 |
rrl | 1476359 | n.2702C>G | non_coding_transcript_exon_variant | 0.11 |
rrl | 1476381 | n.2724G>C | non_coding_transcript_exon_variant | 0.22 |
rrl | 1476428 | n.2771C>T | non_coding_transcript_exon_variant | 0.3 |
rrl | 1476429 | n.2772A>C | non_coding_transcript_exon_variant | 0.3 |
rrl | 1476466 | n.2809C>T | non_coding_transcript_exon_variant | 0.11 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
pepQ | 2859916 | p.Thr168Ile | missense_variant | 1.0 |
Rv3083 | 3448497 | c.-7T>A | upstream_gene_variant | 1.0 |
fbiA | 3640382 | c.-161G>A | upstream_gene_variant | 1.0 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
Rv3083 | 3448507 | c.5_*1408del | frameshift_variant&stop_lost&splice_region_variant | 1.0 |