Run ID: ERR4815520
Sample name:
Date: 01-04-2023 13:55:01
Number of reads: 8414795
Percentage reads mapped: 98.77
Strain: lineage4.8
Drug-resistance: Other
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.8 | Euro-American (mainly T) | T1;T2;T3;T5 | RD219 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
rrs | 1472733 | n.888G>A | non_coding_transcript_exon_variant | 0.51 | streptomycin |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
embR | 1417140 | p.Ala70Thr | missense_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1472172 | n.327T>C | non_coding_transcript_exon_variant | 0.14 |
rrs | 1472251 | n.406G>A | non_coding_transcript_exon_variant | 0.15 |
rrs | 1472507 | n.662C>G | non_coding_transcript_exon_variant | 0.1 |
rrs | 1472517 | n.672T>A | non_coding_transcript_exon_variant | 0.15 |
rrs | 1472518 | n.673G>T | non_coding_transcript_exon_variant | 0.15 |
rrs | 1472530 | n.685G>A | non_coding_transcript_exon_variant | 0.27 |
rrs | 1472537 | n.692C>T | non_coding_transcript_exon_variant | 0.38 |
rrs | 1472544 | n.699C>A | non_coding_transcript_exon_variant | 0.39 |
rrs | 1472545 | n.700A>T | non_coding_transcript_exon_variant | 0.39 |
rrs | 1472566 | n.721G>A | non_coding_transcript_exon_variant | 0.42 |
rrs | 1472571 | n.726G>C | non_coding_transcript_exon_variant | 0.42 |
rrs | 1472579 | n.734G>C | non_coding_transcript_exon_variant | 0.33 |
rrs | 1472580 | n.735C>T | non_coding_transcript_exon_variant | 0.29 |
rrs | 1472581 | n.736A>T | non_coding_transcript_exon_variant | 0.46 |
rrs | 1472598 | n.753A>C | non_coding_transcript_exon_variant | 0.48 |
rrs | 1472599 | n.754G>T | non_coding_transcript_exon_variant | 0.48 |
rrs | 1472616 | n.771G>A | non_coding_transcript_exon_variant | 0.17 |
rrs | 1472655 | n.810G>A | non_coding_transcript_exon_variant | 0.17 |
rrs | 1472713 | n.868T>C | non_coding_transcript_exon_variant | 0.33 |
rrs | 1472716 | n.871C>T | non_coding_transcript_exon_variant | 0.32 |
rrs | 1472742 | n.897C>T | non_coding_transcript_exon_variant | 0.54 |
rrs | 1472744 | n.899A>G | non_coding_transcript_exon_variant | 0.54 |
rrs | 1472781 | n.936C>T | non_coding_transcript_exon_variant | 0.55 |
rrs | 1472793 | n.948A>T | non_coding_transcript_exon_variant | 0.46 |
rrs | 1472803 | n.958T>A | non_coding_transcript_exon_variant | 0.38 |
rrs | 1472824 | n.979T>A | non_coding_transcript_exon_variant | 0.26 |
rrl | 1474001 | n.344C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474695 | n.1038A>G | non_coding_transcript_exon_variant | 0.15 |
rrl | 1476227 | n.2570C>T | non_coding_transcript_exon_variant | 0.16 |
rrl | 1476229 | n.2572C>T | non_coding_transcript_exon_variant | 0.16 |
rrl | 1476250 | n.2593C>G | non_coding_transcript_exon_variant | 0.17 |
rrl | 1476251 | n.2594T>C | non_coding_transcript_exon_variant | 0.17 |
rrl | 1476257 | n.2600G>C | non_coding_transcript_exon_variant | 0.17 |
rrl | 1476260 | n.2603A>G | non_coding_transcript_exon_variant | 0.24 |
rrl | 1476280 | n.2623A>C | non_coding_transcript_exon_variant | 0.17 |
rrl | 1476359 | n.2702C>G | non_coding_transcript_exon_variant | 0.1 |
rrl | 1476369 | n.2712C>T | non_coding_transcript_exon_variant | 0.1 |
rrl | 1476428 | n.2771C>T | non_coding_transcript_exon_variant | 0.15 |
rrl | 1476429 | n.2772A>C | non_coding_transcript_exon_variant | 0.16 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
PPE35 | 2168149 | p.Pro822Ser | missense_variant | 1.0 |
PPE35 | 2170559 | c.54G>C | synonymous_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
Rv2752c | 3064992 | p.Trp400* | stop_gained | 1.0 |
Rv3083 | 3448497 | c.-7T>A | upstream_gene_variant | 1.0 |
Rv3083 | 3448500 | c.-4A>G | upstream_gene_variant | 1.0 |
Rv3083 | 3448501 | c.-3G>T | upstream_gene_variant | 1.0 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
whiB6 | 4338292 | c.229dupG | frameshift_variant | 1.0 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
Rv3083 | 3448507 | c.5_*1408del | frameshift_variant&stop_lost&splice_region_variant | 1.0 |